Wall clock time and date at job start Mon Mar 30 2020 07:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 N 1.46895 * 109.47255 * 120.00124 * 2 1 3 5 5 C 1.46903 * 111.00018 * 148.32483 * 4 2 1 6 6 C 1.53002 * 117.49997 * 13.82596 * 5 4 2 7 7 C 1.52999 * 117.49943 * 305.16483 * 5 4 2 8 8 C 1.46896 * 111.00181 * 272.27810 * 4 2 1 9 9 C 1.53002 * 109.46781 * 58.46163 * 8 4 2 10 10 C 1.52999 * 109.47076 * 179.97438 * 9 8 4 11 11 C 1.53004 * 109.47319 * 300.00078 * 10 9 8 12 12 C 1.50703 * 109.47089 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99918 * 179.72718 * 12 11 10 15 15 N 1.31515 * 119.99648 * 0.27454 * 14 12 11 16 16 Si 1.86792 * 120.00039 * 180.27300 * 14 12 11 17 17 H 1.48497 * 109.47089 * 90.00019 * 16 14 12 18 18 H 1.48496 * 109.47361 * 209.99888 * 16 14 12 19 19 H 1.48501 * 109.47428 * 329.99908 * 16 14 12 20 20 C 1.52995 * 109.46954 * 60.00208 * 11 10 9 21 21 C 1.53004 * 109.47108 * 299.99749 * 20 11 10 22 22 H 1.09003 * 109.46790 * 289.50593 * 1 2 3 23 23 H 1.08997 * 109.47406 * 49.50743 * 1 2 3 24 24 H 1.08998 * 109.47157 * 169.51104 * 1 2 3 25 25 H 1.09001 * 109.47012 * 240.00049 * 2 1 3 26 26 H 1.09000 * 109.47196 * 303.72319 * 3 2 1 27 27 H 1.08995 * 109.47324 * 63.73266 * 3 2 1 28 28 H 1.09001 * 109.46767 * 183.73047 * 3 2 1 29 29 H 1.09003 * 115.54763 * 159.49029 * 5 4 2 30 30 H 1.09007 * 117.49428 * 359.97438 * 6 5 4 31 31 H 1.08992 * 117.50142 * 145.01896 * 6 5 4 32 32 H 1.09005 * 117.49827 * 214.97755 * 7 5 4 33 33 H 1.08997 * 117.50130 * 359.97438 * 7 5 4 34 34 H 1.08994 * 109.47363 * 298.46371 * 8 4 2 35 35 H 1.09004 * 109.47335 * 60.00454 * 9 8 4 36 36 H 1.08994 * 109.47304 * 299.99984 * 9 8 4 37 37 H 1.09005 * 109.47449 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47076 * 60.00202 * 10 9 8 39 39 H 1.08994 * 109.47148 * 300.00080 * 11 10 9 40 40 H 0.97006 * 119.99617 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.47631 * 59.99497 * 20 11 10 42 42 H 1.09000 * 109.47379 * 180.02562 * 20 11 10 43 43 H 1.09002 * 109.47146 * 300.00562 * 21 20 11 44 44 H 1.08999 * 109.47424 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.2956 -1.3698 0.9322 6 6 4.0386 -0.9959 -0.3520 7 6 3.3414 -2.3539 -0.2384 8 6 2.1438 0.2369 2.3301 9 6 0.7837 0.8768 2.6159 10 6 0.9128 1.8443 3.7941 11 6 1.3872 1.0804 5.0319 12 6 1.5137 2.0333 6.1925 13 1 1.2788 3.0792 6.0606 14 6 1.9234 1.5689 7.4244 15 7 2.2091 0.2952 7.5851 16 14 2.0729 2.7487 8.8648 17 1 0.7803 2.8064 9.5936 18 1 3.1386 2.2751 9.7841 19 1 2.4186 4.1026 8.3621 20 6 2.7473 0.4406 4.7461 21 6 2.6183 -0.5270 3.5680 22 1 -0.3633 0.3432 0.9687 23 1 -0.3634 0.6673 -0.7815 24 1 -0.3633 -1.0105 -0.1871 25 1 1.8933 -0.5138 -0.8900 26 1 1.6232 1.9752 -0.8547 27 1 1.7323 1.9366 0.9215 28 1 3.1279 1.4432 -0.0669 29 1 3.8963 -1.6045 1.8109 30 1 3.5804 -0.2476 -0.9988 31 1 5.1279 -0.9851 -0.3183 32 1 3.9726 -3.2360 -0.1299 33 1 2.4248 -2.4992 -0.8100 34 1 2.8665 1.0146 2.0836 35 1 0.0609 0.0990 2.8626 36 1 0.4455 1.4206 1.7340 37 1 -0.0563 2.2999 3.9980 38 1 1.6356 2.6221 3.5480 39 1 0.6644 0.3026 5.2780 40 1 2.4970 -0.0316 8.4519 41 1 3.4702 1.2184 4.4999 42 1 3.0851 -0.1040 5.6278 43 1 1.8953 -1.3048 3.8141 44 1 3.5873 -0.9825 3.3640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:51 Heat of formation + Delta-G solvation = 18.275611 kcal Electronic energy + Delta-G solvation = -20023.559106 eV Core-core repulsion = 17362.163203 eV Total energy + Delta-G solvation = -2661.395903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29676 -38.40643 -35.96926 -34.42436 -32.55534 -30.91419 -29.61102 -28.16747 -26.31685 -23.70630 -23.18340 -22.66611 -22.45515 -20.43730 -19.58482 -18.44423 -17.75283 -16.65734 -16.55263 -15.86244 -15.22379 -14.95037 -14.74284 -14.66856 -14.32552 -13.91342 -13.39867 -13.28268 -13.12057 -12.97112 -12.77760 -12.54264 -12.43145 -12.25488 -12.21058 -12.12661 -12.04661 -11.77909 -11.59657 -11.51863 -11.41583 -11.11596 -11.07857 -10.55286 -10.37382 -10.25579 -8.92672 -8.05146 -6.19382 1.41099 1.41714 1.51807 2.44623 2.73824 3.16222 3.21064 3.84525 3.97001 3.98278 4.04270 4.16422 4.23463 4.34233 4.44535 4.51137 4.60159 4.68621 4.74487 4.76493 4.82284 4.83823 4.87967 4.90271 5.01042 5.04580 5.06674 5.12270 5.15202 5.22091 5.26279 5.35443 5.44414 5.48523 5.52074 5.55606 5.65642 5.73648 6.06736 6.20167 6.31738 6.36218 6.44341 6.93880 7.48529 8.98592 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.005552 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.708193 B = 5042.032633 C = 5459.820218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.069 3.931 3 C -0.193 4.193 4 N -0.505 5.505 5 C 0.000 4.000 6 C -0.216 4.216 7 C -0.163 4.163 8 C 0.105 3.895 9 C -0.108 4.108 10 C -0.102 4.102 11 C 0.046 3.954 12 C -0.534 4.534 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.097 4.097 21 C -0.100 4.100 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.046 0.954 39 H -0.010 1.010 40 H 0.259 0.741 41 H 0.024 0.976 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -1.598 -17.181 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.039 4.039 3 C -0.251 4.251 4 N -0.227 5.227 5 C -0.110 4.110 6 C -0.255 4.255 7 C -0.201 4.201 8 C -0.003 4.003 9 C -0.146 4.146 10 C -0.140 4.140 11 C 0.027 3.973 12 C -0.572 4.572 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.136 4.136 21 C -0.138 4.138 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.008 0.992 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.764 -2.075 -16.912 17.056 hybrid contribution 0.763 0.927 1.132 1.650 sum 1.527 -1.148 -15.780 15.895 Atomic orbital electron populations 1.22227 0.94162 1.02053 1.03083 1.21851 0.96266 0.93046 0.92709 1.22735 1.01259 0.97754 1.03399 1.62077 1.25356 1.30005 1.05258 1.22803 0.92281 1.02836 0.93050 1.23700 1.00105 0.99512 1.02168 1.23112 1.02532 0.93561 1.00866 1.21431 0.96673 0.92632 0.89560 1.22022 0.96307 0.98130 0.98095 1.21518 0.99623 0.97657 0.95205 1.18619 0.92921 0.93695 0.92028 1.21647 1.44628 0.95181 0.95751 0.93142 1.25742 0.95207 0.96529 1.01220 1.70036 1.46836 1.14770 1.24083 0.85665 0.77740 0.79498 0.79409 1.20235 1.20971 1.19292 1.21367 0.98613 0.97015 0.96603 1.21590 0.99576 0.97922 0.94667 0.91512 0.91076 0.92741 0.89276 0.90718 0.91618 0.92843 0.87123 0.87670 0.88405 0.87589 0.88484 0.94183 0.92894 0.89023 0.93428 0.93522 0.99226 0.93191 0.95680 0.92487 0.93806 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.04 71.98 0.65 -2.83 16 2 C 0.07 1.59 2.21 44.92 0.10 1.69 16 3 C -0.19 -4.32 7.39 71.98 0.53 -3.79 16 4 N -0.51 -14.30 4.50 -820.99 -3.69 -18.00 16 5 C 0.00 -0.01 5.80 44.92 0.26 0.25 16 6 C -0.22 -4.42 9.02 30.62 0.28 -4.15 16 7 C -0.16 -3.32 9.87 30.62 0.30 -3.02 16 8 C 0.10 3.50 1.35 44.92 0.06 3.57 16 9 C -0.11 -3.72 3.14 30.59 0.10 -3.62 16 10 C -0.10 -4.23 5.14 30.60 0.16 -4.08 16 11 C 0.05 2.34 2.10 -11.54 -0.02 2.32 16 12 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.64 5.31 84.65 0.45 1.09 16 15 N -0.92 -54.21 11.33 21.45 0.24 -53.97 16 16 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.10 -4.72 4.98 30.59 0.15 -4.57 16 21 C -0.10 -3.96 5.04 30.60 0.15 -3.81 16 22 H 0.07 1.68 4.25 -2.39 -0.01 1.67 16 23 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.85 4.87 -2.39 -0.01 1.84 16 26 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 27 H 0.07 1.70 4.29 -2.39 -0.01 1.69 16 28 H 0.05 1.20 6.68 -2.39 -0.02 1.19 16 29 H 0.11 3.11 5.86 -2.39 -0.01 3.10 16 30 H 0.11 2.05 4.93 -2.38 -0.01 2.04 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.10 1.92 7.47 -2.39 -0.02 1.90 16 34 H 0.04 1.38 6.44 -2.39 -0.02 1.36 16 35 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 36 H 0.09 2.67 3.81 -2.39 -0.01 2.66 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 3.15 6.08 -2.39 -0.01 3.14 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 2.01 6.04 -2.39 -0.01 2.00 16 Total: -1.00 -60.20 311.50 2.93 -57.27 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.97 Total: 19.12 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 3.39 Total: -50.81 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -3.45 Total: -71.96 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.20 2.93 -57.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.542 kcal (2) G-P(sol) polarization free energy of solvation -60.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds