Wall clock time and date at job start Mon Mar 30 2020 07:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47218 * 2 1 4 4 H 1.07997 * 119.99674 * 213.40231 * 3 2 1 5 5 C 1.37881 * 119.99740 * 33.40491 * 3 2 1 6 6 N 1.31511 * 120.00431 * 352.78237 * 5 3 2 7 7 Si 1.86799 * 119.99473 * 172.77947 * 5 3 2 8 8 H 1.48505 * 109.47055 * 90.00164 * 7 5 3 9 9 H 1.48501 * 109.46996 * 209.99886 * 7 5 3 10 10 H 1.48497 * 109.47552 * 330.00077 * 7 5 3 11 11 C 1.52993 * 109.47151 * 240.00007 * 2 1 3 12 12 C 1.53003 * 109.47012 * 178.33156 * 11 2 1 13 13 C 1.53002 * 109.47163 * 180.02562 * 12 11 2 14 14 C 1.52999 * 109.47019 * 59.99697 * 13 12 11 15 15 C 1.53008 * 109.47313 * 299.99841 * 14 13 12 16 16 C 1.52997 * 109.46528 * 60.00375 * 15 14 13 17 17 N 1.46902 * 109.46945 * 119.99842 * 2 1 3 18 18 C 1.48533 * 111.00008 * 296.55479 * 17 2 1 19 19 C 1.54939 * 103.22539 * 159.71849 * 18 17 2 20 20 C 1.54594 * 102.92307 * 322.58538 * 19 18 17 21 21 C 1.47903 * 110.99709 * 53.95020 * 17 2 1 22 22 H 1.09002 * 109.46888 * 44.24887 * 1 2 3 23 23 H 1.08997 * 109.47082 * 164.24948 * 1 2 3 24 24 H 1.08998 * 109.47230 * 284.25375 * 1 2 3 25 25 H 0.96999 * 120.00344 * 185.06012 * 6 5 3 26 26 H 1.09003 * 109.47390 * 298.32627 * 11 2 1 27 27 H 1.09002 * 109.47006 * 299.99582 * 12 11 2 28 28 H 1.08997 * 109.47498 * 59.99768 * 12 11 2 29 29 H 1.08999 * 109.46971 * 300.00182 * 13 12 11 30 30 H 1.09003 * 109.47267 * 179.97438 * 13 12 11 31 31 H 1.09009 * 109.47257 * 180.02562 * 14 13 12 32 32 H 1.08993 * 109.47502 * 60.00251 * 14 13 12 33 33 H 1.08993 * 109.46776 * 300.00246 * 15 14 13 34 34 H 1.08999 * 109.46682 * 180.02562 * 15 14 13 35 35 H 1.09003 * 109.46847 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.47697 * 60.00435 * 16 15 14 37 37 H 1.08997 * 110.66966 * 278.15513 * 18 17 2 38 38 H 1.08996 * 110.66996 * 41.28488 * 18 17 2 39 39 H 1.09004 * 110.72525 * 204.22428 * 19 18 17 40 40 H 1.09006 * 110.72244 * 80.94952 * 19 18 17 41 41 H 1.08990 * 110.31012 * 263.04018 * 20 19 18 42 42 H 1.09002 * 110.30341 * 140.87179 * 20 19 18 43 43 H 1.08993 * 109.91910 * 333.50689 * 21 17 2 44 44 H 1.08998 * 109.91496 * 94.80869 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 2.9485 1.6696 -0.5149 5 6 1.3223 2.4031 0.6574 6 7 0.1386 2.1325 1.1625 7 14 2.0419 4.1182 0.8307 8 1 1.6316 4.9468 -0.3314 9 1 1.5424 4.7403 2.0832 10 1 3.5235 4.0310 0.8779 11 6 2.0400 -0.7212 -1.2492 12 6 3.5694 -0.6849 -1.2703 13 6 4.0795 -1.4056 -2.5199 14 6 3.5354 -0.7085 -3.7685 15 6 2.0059 -0.7449 -3.7473 16 6 1.4960 -0.0241 -2.4978 17 7 2.0196 -0.6925 1.1995 18 6 1.6126 0.0275 2.4332 19 6 1.7284 -1.0586 3.5321 20 6 1.2413 -2.3353 2.8090 21 6 1.4301 -2.0446 1.3086 22 1 -0.3633 0.7362 -0.7171 23 1 -0.3633 -0.9890 -0.2789 24 1 -0.3633 0.2530 0.9960 25 1 -0.3924 2.8402 1.5600 26 1 1.7014 -1.7572 -1.2343 27 1 3.9081 0.3510 -1.2852 28 1 3.9570 -1.1811 -0.3806 29 1 3.7407 -2.4415 -2.5055 30 1 5.1691 -1.3794 -2.5352 31 1 3.8984 -1.2222 -4.6588 32 1 3.8740 0.3274 -3.7829 33 1 1.6674 -1.7808 -3.7329 34 1 1.6184 -0.2486 -4.6371 35 1 0.4064 -0.0504 -2.4825 36 1 1.8345 1.0118 -2.5122 37 1 2.2916 0.8553 2.6374 38 1 0.5855 0.3827 2.3502 39 1 1.0813 -0.8231 4.3770 40 1 2.7631 -1.1700 3.8567 41 1 0.1896 -2.5171 3.0297 42 1 1.8450 -3.1925 3.1072 43 1 0.4660 -2.0714 0.8010 44 1 2.1044 -2.7801 0.8699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260592268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:44 Heat of formation + Delta-G solvation = -2.032937 kcal Electronic energy + Delta-G solvation = -20835.534546 eV Core-core repulsion = 18173.257998 eV Total energy + Delta-G solvation = -2662.276548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -39.06890 -37.01715 -33.93157 -31.59289 -30.04266 -29.01642 -27.73570 -26.62940 -25.34631 -22.55929 -21.54238 -20.66991 -19.90764 -18.98564 -18.13065 -16.02583 -15.09256 -14.86676 -14.56007 -14.19357 -13.55082 -13.37942 -12.98357 -12.88270 -12.53617 -12.35329 -11.88264 -11.43586 -11.34975 -11.11971 -10.95759 -10.71245 -10.61262 -10.51103 -10.43121 -10.36262 -10.24525 -10.08428 -9.96737 -9.78112 -9.67919 -9.34331 -9.08882 -8.81582 -8.66837 -8.27021 -6.82038 -5.80914 -4.04490 3.28606 3.37219 3.42001 4.41361 5.09316 5.36301 5.44657 5.48365 5.53802 5.64792 5.65584 5.86077 6.01139 6.14876 6.21387 6.25044 6.29021 6.30969 6.33378 6.37873 6.43732 6.58147 6.61871 6.63743 6.72000 6.73040 6.84000 6.88146 6.95560 7.03495 7.10905 7.17758 7.28638 7.39723 7.43854 7.47080 7.53750 7.61252 7.96069 8.13218 8.36969 8.65234 8.83977 9.02656 9.60356 11.00161 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.011552 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.122392 B = 2423.251952 C = 3516.918481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.220 3.780 3 C -0.480 4.480 4 H 0.061 0.939 5 C 0.065 3.935 6 N -0.882 5.882 7 Si 0.886 3.114 8 H -0.284 1.284 9 H -0.288 1.288 10 H -0.274 1.274 11 C -0.055 4.055 12 C -0.099 4.099 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.103 4.103 17 N -0.507 5.507 18 C 0.051 3.949 19 C -0.133 4.133 20 C -0.126 4.126 21 C 0.026 3.974 22 H 0.045 0.955 23 H -0.014 1.014 24 H 0.093 0.907 25 H 0.255 0.745 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 -5.866 -2.573 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.133 3.867 3 C -0.519 4.519 4 H 0.079 0.921 5 C -0.136 4.136 6 N -0.523 5.523 7 Si 0.714 3.286 8 H -0.210 1.210 9 H -0.214 1.214 10 H -0.199 1.199 11 C -0.074 4.074 12 C -0.137 4.137 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.156 4.156 16 C -0.141 4.141 17 N -0.232 5.232 18 C -0.076 4.076 19 C -0.171 4.171 20 C -0.164 4.164 21 C -0.103 4.103 22 H 0.064 0.936 23 H 0.005 0.995 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.678 -5.808 -2.474 6.857 hybrid contribution -0.571 0.965 0.130 1.129 sum 2.107 -4.843 -2.344 5.778 Atomic orbital electron populations 1.22513 0.98285 0.94252 1.04635 1.18867 0.90610 0.92064 0.85181 1.21097 1.08476 0.91253 1.31106 0.92119 1.24997 0.94998 0.98529 0.95056 1.70164 1.10295 1.31235 1.40579 0.86682 0.79674 0.84849 0.77408 1.20987 1.21378 1.19924 1.20968 0.94551 0.96692 0.95232 1.21438 0.96223 1.00568 0.95436 1.21613 0.98878 0.99116 0.96191 1.21496 0.96117 1.00489 0.97141 1.21578 0.95395 1.00059 0.98592 1.21496 0.99510 1.00219 0.92847 1.65268 1.54695 0.99862 1.03358 1.23230 1.02520 0.94422 0.87468 1.22607 0.99778 0.96419 0.98296 1.22336 0.99653 0.97792 0.96641 1.22842 0.98071 0.94869 0.94491 0.93642 0.99507 0.88928 0.93449 0.94573 0.91646 0.91870 0.93239 0.93395 0.93603 0.92303 0.93195 0.93293 0.92938 0.91050 0.91907 0.89602 0.92922 0.92541 0.92916 0.92871 0.94039 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 5.26 37.16 0.20 -3.09 16 2 C 0.22 5.02 0.14 -132.75 -0.02 5.00 16 3 C -0.48 -12.04 6.16 -34.44 -0.21 -12.25 16 4 H 0.06 1.56 5.98 -52.49 -0.31 1.25 16 5 C 0.07 1.65 4.20 -17.82 -0.07 1.58 16 6 N -0.88 -22.72 7.87 55.43 0.44 -22.28 16 7 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 C -0.06 -1.13 1.38 -90.62 -0.13 -1.25 16 12 C -0.10 -1.91 4.79 -26.73 -0.13 -2.04 16 13 C -0.12 -1.94 5.92 -26.73 -0.16 -2.10 16 14 C -0.11 -1.76 5.92 -26.73 -0.16 -1.91 16 15 C -0.12 -1.91 5.92 -26.73 -0.16 -2.07 16 16 C -0.10 -1.99 4.62 -26.73 -0.12 -2.11 16 17 N -0.51 -11.21 4.39 -216.19 -0.95 -12.15 16 18 C 0.05 1.14 4.74 -1.90 -0.01 1.13 16 19 C -0.13 -2.46 7.06 -24.87 -0.18 -2.64 16 20 C -0.13 -2.20 6.93 -25.37 -0.18 -2.38 16 21 C 0.03 0.51 5.33 -2.75 -0.01 0.49 16 22 H 0.04 1.15 6.87 -51.93 -0.36 0.79 16 23 H -0.01 -0.32 6.52 -51.93 -0.34 -0.65 16 24 H 0.09 2.36 4.25 -51.93 -0.22 2.14 16 25 H 0.25 6.44 8.32 -40.82 -0.34 6.10 16 26 H 0.04 0.74 7.33 -51.93 -0.38 0.36 16 27 H 0.06 1.37 6.21 -51.93 -0.32 1.05 16 28 H 0.06 1.28 7.65 -51.93 -0.40 0.88 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.05 6.77 -51.93 -0.35 0.70 16 36 H 0.07 1.50 7.27 -51.93 -0.38 1.13 16 37 H 0.06 1.53 7.59 -51.93 -0.39 1.13 16 38 H 0.09 2.11 4.30 -51.93 -0.22 1.88 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.85 5.45 -51.93 -0.28 0.57 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -24.70 305.59 -10.01 -34.71 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.75 Total: 3.27 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.34 Total: -23.64 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.51 Total: -34.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -24.70 -10.01 -34.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.679 kcal (2) G-P(sol) polarization free energy of solvation -24.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds