Wall clock time and date at job start Mon Mar 30 2020 07:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47218 * 2 1 4 4 H 1.07997 * 119.99674 * 213.40231 * 3 2 1 5 5 C 1.37881 * 119.99740 * 33.40491 * 3 2 1 6 6 N 1.31511 * 120.00431 * 352.78237 * 5 3 2 7 7 Si 1.86799 * 119.99473 * 172.77947 * 5 3 2 8 8 H 1.48505 * 109.47055 * 90.00164 * 7 5 3 9 9 H 1.48501 * 109.46996 * 209.99886 * 7 5 3 10 10 H 1.48497 * 109.47552 * 330.00077 * 7 5 3 11 11 C 1.52993 * 109.47151 * 240.00007 * 2 1 3 12 12 C 1.53003 * 109.47012 * 178.33156 * 11 2 1 13 13 C 1.53002 * 109.47163 * 180.02562 * 12 11 2 14 14 C 1.52999 * 109.47019 * 59.99697 * 13 12 11 15 15 C 1.53008 * 109.47313 * 299.99841 * 14 13 12 16 16 C 1.52997 * 109.46528 * 60.00375 * 15 14 13 17 17 N 1.46902 * 109.46945 * 119.99842 * 2 1 3 18 18 C 1.48533 * 111.00008 * 296.55479 * 17 2 1 19 19 C 1.54939 * 103.22539 * 159.71849 * 18 17 2 20 20 C 1.54594 * 102.92307 * 322.58538 * 19 18 17 21 21 C 1.47903 * 110.99709 * 53.95020 * 17 2 1 22 22 H 1.09002 * 109.46888 * 44.24887 * 1 2 3 23 23 H 1.08997 * 109.47082 * 164.24948 * 1 2 3 24 24 H 1.08998 * 109.47230 * 284.25375 * 1 2 3 25 25 H 0.96999 * 120.00344 * 185.06012 * 6 5 3 26 26 H 1.09003 * 109.47390 * 298.32627 * 11 2 1 27 27 H 1.09002 * 109.47006 * 299.99582 * 12 11 2 28 28 H 1.08997 * 109.47498 * 59.99768 * 12 11 2 29 29 H 1.08999 * 109.46971 * 300.00182 * 13 12 11 30 30 H 1.09003 * 109.47267 * 179.97438 * 13 12 11 31 31 H 1.09009 * 109.47257 * 180.02562 * 14 13 12 32 32 H 1.08993 * 109.47502 * 60.00251 * 14 13 12 33 33 H 1.08993 * 109.46776 * 300.00246 * 15 14 13 34 34 H 1.08999 * 109.46682 * 180.02562 * 15 14 13 35 35 H 1.09003 * 109.46847 * 180.02562 * 16 15 14 36 36 H 1.08993 * 109.47697 * 60.00435 * 16 15 14 37 37 H 1.08997 * 110.66966 * 278.15513 * 18 17 2 38 38 H 1.08996 * 110.66996 * 41.28488 * 18 17 2 39 39 H 1.09004 * 110.72525 * 204.22428 * 19 18 17 40 40 H 1.09006 * 110.72244 * 80.94952 * 19 18 17 41 41 H 1.08990 * 110.31012 * 263.04018 * 20 19 18 42 42 H 1.09002 * 110.30341 * 140.87179 * 20 19 18 43 43 H 1.08993 * 109.91910 * 333.50689 * 21 17 2 44 44 H 1.08998 * 109.91496 * 94.80869 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 2.9485 1.6696 -0.5149 5 6 1.3223 2.4031 0.6574 6 7 0.1386 2.1325 1.1625 7 14 2.0419 4.1182 0.8307 8 1 1.6316 4.9468 -0.3314 9 1 1.5424 4.7403 2.0832 10 1 3.5235 4.0310 0.8779 11 6 2.0400 -0.7212 -1.2492 12 6 3.5694 -0.6849 -1.2703 13 6 4.0795 -1.4056 -2.5199 14 6 3.5354 -0.7085 -3.7685 15 6 2.0059 -0.7449 -3.7473 16 6 1.4960 -0.0241 -2.4978 17 7 2.0196 -0.6925 1.1995 18 6 1.6126 0.0275 2.4332 19 6 1.7284 -1.0586 3.5321 20 6 1.2413 -2.3353 2.8090 21 6 1.4301 -2.0446 1.3086 22 1 -0.3633 0.7362 -0.7171 23 1 -0.3633 -0.9890 -0.2789 24 1 -0.3633 0.2530 0.9960 25 1 -0.3924 2.8402 1.5600 26 1 1.7014 -1.7572 -1.2343 27 1 3.9081 0.3510 -1.2852 28 1 3.9570 -1.1811 -0.3806 29 1 3.7407 -2.4415 -2.5055 30 1 5.1691 -1.3794 -2.5352 31 1 3.8984 -1.2222 -4.6588 32 1 3.8740 0.3274 -3.7829 33 1 1.6674 -1.7808 -3.7329 34 1 1.6184 -0.2486 -4.6371 35 1 0.4064 -0.0504 -2.4825 36 1 1.8345 1.0118 -2.5122 37 1 2.2916 0.8553 2.6374 38 1 0.5855 0.3827 2.3502 39 1 1.0813 -0.8231 4.3770 40 1 2.7631 -1.1700 3.8567 41 1 0.1896 -2.5171 3.0297 42 1 1.8450 -3.1925 3.1072 43 1 0.4660 -2.0714 0.8010 44 1 2.1044 -2.7801 0.8699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260592268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:42 Heat of formation + Delta-G solvation = -13.541727 kcal Electronic energy + Delta-G solvation = -20836.033604 eV Core-core repulsion = 18173.257998 eV Total energy + Delta-G solvation = -2662.775606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.74582 -38.51659 -35.64436 -33.38527 -31.49017 -30.54596 -29.38331 -28.40296 -27.28764 -24.18516 -23.00065 -22.24103 -21.46335 -20.48427 -19.91829 -17.82906 -16.73140 -16.68768 -16.19668 -15.81784 -14.97995 -14.82008 -14.71758 -14.51415 -14.19458 -13.95795 -13.40545 -13.09525 -12.91970 -12.84208 -12.76370 -12.45282 -12.19841 -12.09044 -12.05834 -11.94789 -11.80531 -11.73340 -11.61903 -11.51813 -11.26731 -11.03278 -10.60604 -10.55642 -10.39338 -10.20495 -8.60658 -7.77916 -6.04848 1.38770 1.44168 1.51315 2.46873 3.17948 3.81638 4.03034 4.09960 4.10829 4.16267 4.19905 4.37452 4.57993 4.65949 4.71666 4.83490 4.86190 4.88493 4.90036 4.93773 4.97685 5.03663 5.08766 5.13403 5.21106 5.25938 5.29645 5.31290 5.44004 5.44504 5.48469 5.51908 5.56319 5.66237 5.67385 5.76804 5.84027 5.85145 5.97610 6.34928 6.41141 6.73078 7.02567 7.12319 7.60360 9.00583 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.011552 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.122392 B = 2423.251952 C = 3516.918481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.216 3.784 3 C -0.487 4.487 4 H 0.048 0.952 5 C 0.031 3.969 6 N -0.895 5.895 7 Si 0.930 3.070 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.278 1.278 11 C -0.052 4.052 12 C -0.092 4.092 13 C -0.115 4.115 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.099 4.099 17 N -0.515 5.515 18 C 0.052 3.948 19 C -0.125 4.125 20 C -0.118 4.118 21 C 0.025 3.975 22 H 0.020 0.980 23 H -0.006 1.006 24 H 0.075 0.925 25 H 0.251 0.749 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -7.615 -3.108 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.129 3.871 3 C -0.526 4.526 4 H 0.066 0.934 5 C -0.168 4.168 6 N -0.535 5.535 7 Si 0.758 3.242 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.203 1.203 11 C -0.071 4.071 12 C -0.129 4.129 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.137 4.137 17 N -0.239 5.239 18 C -0.076 4.076 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.103 4.103 22 H 0.039 0.961 23 H 0.013 0.987 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.048 0.952 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.518 -7.560 -3.010 8.865 hybrid contribution -0.839 1.518 0.306 1.761 sum 2.679 -6.041 -2.705 7.141 Atomic orbital electron populations 1.22284 0.99159 0.93685 1.02686 1.18879 0.89804 0.91636 0.86809 1.21233 1.07869 0.92773 1.30698 0.93399 1.25446 0.95361 1.00774 0.95245 1.70288 1.10755 1.31446 1.41047 0.85986 0.78780 0.82326 0.77081 1.20934 1.21462 1.20277 1.20906 0.95439 0.96329 0.94400 1.21305 0.95224 0.99448 0.96932 1.21561 0.99860 0.99156 0.94639 1.21492 0.95233 1.00383 0.97913 1.21534 0.96162 1.00254 0.97106 1.21408 0.98597 0.99253 0.94452 1.65179 1.54909 1.00951 1.02850 1.23055 1.00176 0.95036 0.89369 1.22544 1.00826 0.95446 0.97488 1.22312 1.00866 0.98003 0.94457 1.22884 0.97518 0.93500 0.96422 0.96125 0.98686 0.90674 0.93866 0.94332 0.94035 0.93112 0.92140 0.91796 0.90612 0.93107 0.92077 0.91767 0.94361 0.93512 0.94839 0.91947 0.91478 0.91670 0.91909 0.90149 0.95171 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 5.26 71.98 0.38 -5.43 16 2 C 0.22 10.04 0.14 2.78 0.00 10.04 16 3 C -0.49 -25.13 6.16 25.60 0.16 -24.97 16 4 H 0.05 2.56 5.98 -2.91 -0.02 2.54 16 5 C 0.03 1.61 4.20 84.66 0.36 1.97 16 6 N -0.89 -47.54 7.87 21.45 0.17 -47.37 16 7 Si 0.93 43.14 29.55 68.60 2.03 45.16 16 8 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 C -0.05 -2.09 1.38 -10.79 -0.01 -2.11 16 12 C -0.09 -3.47 4.79 30.60 0.15 -3.32 16 13 C -0.11 -3.40 5.92 30.59 0.18 -3.22 16 14 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 15 C -0.11 -3.39 5.92 30.60 0.18 -3.21 16 16 C -0.10 -3.83 4.62 30.59 0.14 -3.69 16 17 N -0.51 -22.72 4.39 -837.89 -3.68 -26.40 16 18 C 0.05 2.33 4.74 86.65 0.41 2.74 16 19 C -0.12 -4.43 7.06 31.80 0.22 -4.20 16 20 C -0.12 -3.82 6.93 31.47 0.22 -3.60 16 21 C 0.03 0.95 5.33 86.45 0.46 1.41 16 22 H 0.02 1.05 6.87 -2.39 -0.02 1.03 16 23 H -0.01 -0.26 6.52 -2.39 -0.02 -0.27 16 24 H 0.07 3.94 4.25 -2.39 -0.01 3.93 16 25 H 0.25 13.09 8.32 -92.71 -0.77 12.32 16 26 H 0.04 1.53 7.33 -2.39 -0.02 1.52 16 27 H 0.04 1.75 6.21 -2.39 -0.01 1.74 16 28 H 0.05 2.02 7.65 -2.39 -0.02 2.00 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.55 6.77 -2.39 -0.02 1.53 16 36 H 0.05 2.01 7.27 -2.39 -0.02 1.99 16 37 H 0.03 1.66 7.59 -2.39 -0.02 1.65 16 38 H 0.06 3.14 4.30 -2.39 -0.01 3.13 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.03 1.21 5.45 -2.39 -0.01 1.20 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -53.89 305.59 2.49 -51.40 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.95 Total: 17.75 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.02 Total: -40.54 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -3.51 Total: -73.77 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -53.89 2.49 -51.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.854 kcal (2) G-P(sol) polarization free energy of solvation -53.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds