Wall clock time and date at job start Mon Mar 30 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47753 * 2 1 4 4 H 1.08000 * 120.00524 * 117.77979 * 3 2 1 5 5 C 1.37880 * 119.99401 * 298.06055 * 3 2 1 6 6 N 1.31521 * 119.99959 * 186.52239 * 5 3 2 7 7 Si 1.86796 * 120.00396 * 6.51809 * 5 3 2 8 8 H 1.48494 * 109.47433 * 93.35769 * 7 5 3 9 9 H 1.48500 * 109.47222 * 213.36214 * 7 5 3 10 10 H 1.48508 * 109.47077 * 333.35951 * 7 5 3 11 11 C 1.53009 * 109.47028 * 119.99846 * 2 1 3 12 12 C 1.52997 * 109.46795 * 59.33220 * 11 2 1 13 13 C 1.53007 * 109.46821 * 180.02562 * 12 11 2 14 14 C 1.53003 * 109.47453 * 59.99688 * 13 12 11 15 15 C 1.53004 * 109.46769 * 300.00005 * 14 13 12 16 16 C 1.52996 * 109.46939 * 299.33232 * 11 2 1 17 17 N 1.46900 * 109.46860 * 239.99417 * 2 1 3 18 18 C 1.48531 * 111.00027 * 206.38582 * 17 2 1 19 19 C 1.54938 * 103.22962 * 159.72508 * 18 17 2 20 20 C 1.54598 * 102.91764 * 322.58574 * 19 18 17 21 21 C 1.47893 * 111.00167 * 323.78320 * 17 2 1 22 22 H 1.09001 * 109.47105 * 66.11562 * 1 2 3 23 23 H 1.08993 * 109.47737 * 186.12349 * 1 2 3 24 24 H 1.09010 * 109.46956 * 306.11696 * 1 2 3 25 25 H 0.96994 * 119.99973 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46868 * 179.32913 * 11 2 1 27 27 H 1.09001 * 109.47162 * 299.99513 * 12 11 2 28 28 H 1.08995 * 109.47669 * 59.99673 * 12 11 2 29 29 H 1.09001 * 109.46547 * 299.99512 * 13 12 11 30 30 H 1.09001 * 109.47192 * 179.97438 * 13 12 11 31 31 H 1.08998 * 109.46890 * 180.02562 * 14 13 12 32 32 H 1.08992 * 109.46859 * 59.99748 * 14 13 12 33 33 H 1.09001 * 109.47438 * 300.00304 * 15 14 13 34 34 H 1.09001 * 109.46975 * 179.97438 * 15 14 13 35 35 H 1.09004 * 109.47158 * 299.99366 * 16 11 2 36 36 H 1.08998 * 109.47735 * 59.99618 * 16 11 2 37 37 H 1.09003 * 110.66780 * 278.15947 * 18 17 2 38 38 H 1.09000 * 110.66977 * 41.28615 * 18 17 2 39 39 H 1.09002 * 110.72802 * 204.23119 * 19 18 17 40 40 H 1.08994 * 110.72621 * 80.93815 * 19 18 17 41 41 H 1.09003 * 110.30831 * 263.04042 * 20 19 18 42 42 H 1.09004 * 110.30872 * 140.87401 * 20 19 18 43 43 H 1.09000 * 109.92260 * 333.50908 * 21 17 2 44 44 H 1.09003 * 109.92101 * 94.60445 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 1 2.6235 1.7846 0.8275 5 6 1.7327 2.2579 -1.0538 6 7 2.2750 3.4543 -1.1180 7 14 0.5564 1.6928 -2.3903 8 1 -0.8203 2.1405 -2.0598 9 1 0.9681 2.2775 -3.6917 10 1 0.5863 0.2108 -2.4819 11 6 2.0400 -0.7213 1.2493 12 6 1.5162 -2.1588 1.2577 13 6 2.0257 -2.8798 2.5074 14 6 1.5290 -2.1487 3.7563 15 6 2.0529 -0.7112 3.7478 16 6 1.5437 0.0097 2.4984 17 7 2.0196 -0.6926 -1.1994 18 6 3.3681 -1.2702 -0.9673 19 6 3.4831 -2.3556 -2.0670 20 6 2.0508 -2.9337 -2.1330 21 6 1.1460 -1.8346 -1.5457 22 1 -0.3633 0.4161 -0.9397 23 1 -0.3634 -1.0217 0.1096 24 1 -0.3633 0.6058 0.8302 25 1 2.0645 4.0431 -1.8595 26 1 3.1299 -0.7317 1.2433 27 1 0.4263 -2.1484 1.2638 28 1 1.8697 -2.6795 0.3678 29 1 3.1157 -2.8903 2.5017 30 1 1.6523 -3.9039 2.5136 31 1 1.8924 -2.6622 4.6464 32 1 0.4392 -2.1383 3.7618 33 1 3.1428 -0.7216 3.7421 34 1 1.6987 -0.1901 4.6373 35 1 1.9169 1.0338 2.4924 36 1 0.4538 0.0202 2.5044 37 1 4.1392 -0.5104 -1.0947 38 1 3.4290 -1.7191 0.0241 39 1 4.1969 -3.1261 -1.7754 40 1 3.7634 -1.9097 -3.0212 41 1 1.9812 -3.8414 -1.5336 42 1 1.7733 -3.1398 -3.1668 43 1 0.6458 -2.2045 -0.6506 44 1 0.4056 -1.5255 -2.2835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260592298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:52 Heat of formation + Delta-G solvation = 23.317539 kcal Electronic energy + Delta-G solvation = -21115.015819 eV Core-core repulsion = 18453.838550 eV Total energy + Delta-G solvation = -2661.177269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17523 -36.88588 -34.09211 -31.69856 -30.35412 -29.34377 -28.81608 -27.39008 -25.09794 -22.68590 -22.12931 -21.07955 -20.20716 -19.26004 -18.15406 -16.39583 -15.92406 -15.10239 -14.59431 -14.56521 -13.91433 -13.74916 -13.28953 -12.97022 -12.66527 -12.40931 -12.22135 -11.92038 -11.72892 -11.64248 -11.28868 -11.01528 -10.93288 -10.69741 -10.58760 -10.42493 -10.30030 -10.17481 -10.04231 -9.93073 -9.75470 -9.46304 -9.41051 -8.94126 -8.73688 -8.32953 -6.93375 -5.90598 -3.95268 3.52645 3.65029 3.82101 4.74028 4.94207 5.09575 5.20195 5.20335 5.30664 5.32621 5.44083 5.63004 5.71467 5.76801 5.85030 5.95324 5.97643 5.99411 6.03255 6.06501 6.09002 6.23418 6.28717 6.32133 6.35839 6.40846 6.46136 6.48744 6.52455 6.58034 6.66365 6.68562 6.76020 6.76789 6.88372 6.94983 7.02915 7.14566 7.30182 7.83912 8.02510 8.37684 8.67112 9.09100 9.77589 11.19396 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.011486 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.997473 B = 2437.265509 C = 3239.860156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.204 3.796 3 C -0.499 4.499 4 H 0.072 0.928 5 C 0.088 3.912 6 N -0.904 5.904 7 Si 0.877 3.123 8 H -0.304 1.304 9 H -0.312 1.312 10 H -0.208 1.208 11 C -0.092 4.092 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.104 4.104 17 N -0.491 5.491 18 C 0.030 3.970 19 C -0.125 4.125 20 C -0.129 4.129 21 C 0.008 3.992 22 H 0.045 0.955 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.260 0.740 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -13.234 4.177 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.116 3.884 3 C -0.537 4.537 4 H 0.090 0.910 5 C -0.115 4.115 6 N -0.541 5.541 7 Si 0.709 3.291 8 H -0.233 1.233 9 H -0.241 1.241 10 H -0.132 1.132 11 C -0.112 4.112 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.158 4.158 16 C -0.142 4.142 17 N -0.215 5.215 18 C -0.098 4.098 19 C -0.164 4.164 20 C -0.167 4.167 21 C -0.120 4.120 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.203 -12.691 3.667 13.265 hybrid contribution -0.663 -0.559 -0.148 0.879 sum -1.866 -13.250 3.518 13.836 Atomic orbital electron populations 1.22516 0.98333 0.98872 1.01123 1.19189 0.90840 0.94336 0.84001 1.20721 1.34433 0.91911 1.06598 0.91004 1.24913 0.95214 0.94069 0.97299 1.69971 1.43310 1.08919 1.31894 0.87158 0.78914 0.82842 0.80144 1.23346 1.24133 1.13187 1.21593 1.00187 0.92671 0.96704 1.22170 1.00504 0.97286 0.97134 1.21533 1.00379 0.98015 0.95498 1.21510 1.00358 0.96336 0.97129 1.21587 1.00345 0.95214 0.98650 1.21527 1.00179 0.99954 0.92558 1.65789 1.00360 1.19611 1.35778 1.23354 0.94151 0.95748 0.96532 1.22506 0.95848 0.97878 1.00123 1.22382 0.96100 0.97874 1.00388 1.23336 0.97230 0.91586 0.99839 0.93623 0.94625 0.92500 0.93110 0.91280 0.92195 0.91170 0.92572 0.93170 0.93160 0.92522 0.92622 0.92941 0.90590 0.92677 0.90568 0.92867 0.92436 0.91593 0.92624 0.92286 0.92588 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 6.29 37.16 0.23 -2.91 16 2 C 0.20 4.40 0.09 -132.75 -0.01 4.38 16 3 C -0.50 -13.32 8.03 -34.44 -0.28 -13.59 16 4 H 0.07 2.10 6.83 -52.49 -0.36 1.74 16 5 C 0.09 2.52 5.45 -17.82 -0.10 2.42 16 6 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 7 Si 0.88 22.31 23.86 -169.99 -4.06 18.25 16 8 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 9 H -0.31 -8.34 7.11 56.52 0.40 -7.94 16 10 H -0.21 -4.84 2.91 56.52 0.16 -4.67 16 11 C -0.09 -1.69 0.93 -90.62 -0.08 -1.78 16 12 C -0.13 -2.10 3.01 -26.73 -0.08 -2.18 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.12 -1.78 5.92 -26.75 -0.16 -1.94 16 16 C -0.10 -1.86 4.60 -26.75 -0.12 -1.99 16 17 N -0.49 -10.17 2.79 -216.19 -0.60 -10.78 16 18 C 0.03 0.55 5.39 -1.90 -0.01 0.54 16 19 C -0.13 -1.96 7.06 -24.87 -0.18 -2.13 16 20 C -0.13 -1.94 6.38 -25.37 -0.16 -2.10 16 21 C 0.01 0.14 4.06 -2.76 -0.01 0.13 16 22 H 0.05 1.01 3.25 -51.93 -0.17 0.85 16 23 H 0.03 0.65 4.63 -51.93 -0.24 0.41 16 24 H 0.06 1.18 6.78 -51.92 -0.35 0.83 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.07 1.36 6.11 -51.93 -0.32 1.04 16 27 H 0.06 0.95 6.01 -51.93 -0.31 0.64 16 28 H 0.07 1.10 3.71 -51.93 -0.19 0.91 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.55 6.53 -51.93 -0.34 1.21 16 36 H 0.05 0.98 6.59 -51.93 -0.34 0.64 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.05 0.94 4.07 -51.93 -0.21 0.73 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.95 3.32 -51.93 -0.17 0.78 16 44 H 0.07 1.23 6.58 -51.93 -0.34 0.89 16 LS Contribution 288.81 15.07 4.35 4.35 Total: -1.00 -29.12 288.81 -8.16 -37.29 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.36 Total: 2.52 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -1.27 Total: -24.57 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.17 Total: -37.84 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.06 Total: 18.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.12 -8.16 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.603 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds