Wall clock time and date at job start Mon Mar 30 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47753 * 2 1 4 4 H 1.08000 * 120.00524 * 117.77979 * 3 2 1 5 5 C 1.37880 * 119.99401 * 298.06055 * 3 2 1 6 6 N 1.31521 * 119.99959 * 186.52239 * 5 3 2 7 7 Si 1.86796 * 120.00396 * 6.51809 * 5 3 2 8 8 H 1.48494 * 109.47433 * 93.35769 * 7 5 3 9 9 H 1.48500 * 109.47222 * 213.36214 * 7 5 3 10 10 H 1.48508 * 109.47077 * 333.35951 * 7 5 3 11 11 C 1.53009 * 109.47028 * 119.99846 * 2 1 3 12 12 C 1.52997 * 109.46795 * 59.33220 * 11 2 1 13 13 C 1.53007 * 109.46821 * 180.02562 * 12 11 2 14 14 C 1.53003 * 109.47453 * 59.99688 * 13 12 11 15 15 C 1.53004 * 109.46769 * 300.00005 * 14 13 12 16 16 C 1.52996 * 109.46939 * 299.33232 * 11 2 1 17 17 N 1.46900 * 109.46860 * 239.99417 * 2 1 3 18 18 C 1.48531 * 111.00027 * 206.38582 * 17 2 1 19 19 C 1.54938 * 103.22962 * 159.72508 * 18 17 2 20 20 C 1.54598 * 102.91764 * 322.58574 * 19 18 17 21 21 C 1.47893 * 111.00167 * 323.78320 * 17 2 1 22 22 H 1.09001 * 109.47105 * 66.11562 * 1 2 3 23 23 H 1.08993 * 109.47737 * 186.12349 * 1 2 3 24 24 H 1.09010 * 109.46956 * 306.11696 * 1 2 3 25 25 H 0.96994 * 119.99973 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46868 * 179.32913 * 11 2 1 27 27 H 1.09001 * 109.47162 * 299.99513 * 12 11 2 28 28 H 1.08995 * 109.47669 * 59.99673 * 12 11 2 29 29 H 1.09001 * 109.46547 * 299.99512 * 13 12 11 30 30 H 1.09001 * 109.47192 * 179.97438 * 13 12 11 31 31 H 1.08998 * 109.46890 * 180.02562 * 14 13 12 32 32 H 1.08992 * 109.46859 * 59.99748 * 14 13 12 33 33 H 1.09001 * 109.47438 * 300.00304 * 15 14 13 34 34 H 1.09001 * 109.46975 * 179.97438 * 15 14 13 35 35 H 1.09004 * 109.47158 * 299.99366 * 16 11 2 36 36 H 1.08998 * 109.47735 * 59.99618 * 16 11 2 37 37 H 1.09003 * 110.66780 * 278.15947 * 18 17 2 38 38 H 1.09000 * 110.66977 * 41.28615 * 18 17 2 39 39 H 1.09002 * 110.72802 * 204.23119 * 19 18 17 40 40 H 1.08994 * 110.72621 * 80.93815 * 19 18 17 41 41 H 1.09003 * 110.30831 * 263.04042 * 20 19 18 42 42 H 1.09004 * 110.30872 * 140.87401 * 20 19 18 43 43 H 1.09000 * 109.92260 * 333.50908 * 21 17 2 44 44 H 1.09003 * 109.92101 * 94.60445 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 1 2.6235 1.7846 0.8275 5 6 1.7327 2.2579 -1.0538 6 7 2.2750 3.4543 -1.1180 7 14 0.5564 1.6928 -2.3903 8 1 -0.8203 2.1405 -2.0598 9 1 0.9681 2.2775 -3.6917 10 1 0.5863 0.2108 -2.4819 11 6 2.0400 -0.7213 1.2493 12 6 1.5162 -2.1588 1.2577 13 6 2.0257 -2.8798 2.5074 14 6 1.5290 -2.1487 3.7563 15 6 2.0529 -0.7112 3.7478 16 6 1.5437 0.0097 2.4984 17 7 2.0196 -0.6926 -1.1994 18 6 3.3681 -1.2702 -0.9673 19 6 3.4831 -2.3556 -2.0670 20 6 2.0508 -2.9337 -2.1330 21 6 1.1460 -1.8346 -1.5457 22 1 -0.3633 0.4161 -0.9397 23 1 -0.3634 -1.0217 0.1096 24 1 -0.3633 0.6058 0.8302 25 1 2.0645 4.0431 -1.8595 26 1 3.1299 -0.7317 1.2433 27 1 0.4263 -2.1484 1.2638 28 1 1.8697 -2.6795 0.3678 29 1 3.1157 -2.8903 2.5017 30 1 1.6523 -3.9039 2.5136 31 1 1.8924 -2.6622 4.6464 32 1 0.4392 -2.1383 3.7618 33 1 3.1428 -0.7216 3.7421 34 1 1.6987 -0.1901 4.6373 35 1 1.9169 1.0338 2.4924 36 1 0.4538 0.0202 2.5044 37 1 4.1392 -0.5104 -1.0947 38 1 3.4290 -1.7191 0.0241 39 1 4.1969 -3.1261 -1.7754 40 1 3.7634 -1.9097 -3.0212 41 1 1.9812 -3.8414 -1.5336 42 1 1.7733 -3.1398 -3.1668 43 1 0.6458 -2.2045 -0.6506 44 1 0.4056 -1.5255 -2.2835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260592298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:49 Heat of formation + Delta-G solvation = 5.678156 kcal Electronic energy + Delta-G solvation = -21115.780720 eV Core-core repulsion = 18453.838550 eV Total energy + Delta-G solvation = -2661.942170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.66951 -38.17625 -35.71192 -33.70869 -31.62438 -30.72133 -30.25022 -28.95605 -26.98002 -24.23002 -23.43537 -22.49365 -21.47813 -20.58533 -19.83672 -18.24240 -17.50027 -16.69316 -16.34210 -15.89694 -15.25937 -14.91022 -14.78940 -14.67591 -14.23150 -13.99223 -13.79658 -13.43289 -13.21438 -13.00326 -12.85945 -12.45709 -12.37759 -12.11240 -11.98550 -11.94508 -11.79228 -11.66768 -11.58666 -11.33854 -11.21544 -11.01566 -10.84448 -10.68190 -10.56371 -10.40275 -8.53427 -8.14308 -6.20135 1.43630 1.53658 1.76876 2.59425 3.15933 3.62998 3.89714 3.97294 4.01955 4.06343 4.07039 4.29219 4.39241 4.46928 4.50663 4.60987 4.66610 4.72804 4.77637 4.81015 4.83867 4.86757 4.90558 4.93431 5.02553 5.09303 5.11882 5.22677 5.25531 5.28307 5.29868 5.35023 5.37363 5.42179 5.48644 5.53011 5.55060 5.66490 5.79086 5.88318 6.25209 6.63422 6.68140 6.98094 7.55779 8.98705 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.011486 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.997473 B = 2437.265509 C = 3239.860156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 C -0.484 4.484 4 H 0.029 0.971 5 C 0.028 3.972 6 N -0.959 5.959 7 Si 0.930 3.070 8 H -0.308 1.308 9 H -0.333 1.333 10 H -0.169 1.169 11 C -0.086 4.086 12 C -0.126 4.126 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.103 4.103 17 N -0.521 5.521 18 C 0.028 3.972 19 C -0.118 4.118 20 C -0.120 4.120 21 C 0.004 3.996 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.255 0.745 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -17.787 4.528 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C -0.522 4.522 4 H 0.047 0.953 5 C -0.169 4.169 6 N -0.600 5.600 7 Si 0.761 3.239 8 H -0.237 1.237 9 H -0.263 1.263 10 H -0.091 1.091 11 C -0.106 4.106 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.141 4.141 17 N -0.245 5.245 18 C -0.099 4.099 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.123 4.123 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.360 -17.283 4.034 17.904 hybrid contribution -0.219 0.912 -0.152 0.950 sum -2.579 -16.372 3.882 17.022 Atomic orbital electron populations 1.22437 0.97266 1.00800 1.00041 1.19033 0.91426 0.91747 0.86319 1.21072 1.31950 0.94981 1.04219 0.95326 1.25706 0.97149 0.94129 0.99931 1.70131 1.46195 1.10696 1.33023 0.86417 0.76455 0.84556 0.76461 1.23730 1.26348 1.09063 1.21452 0.99050 0.94877 0.95182 1.22078 1.00612 0.94725 0.98876 1.21523 1.00415 0.99029 0.94118 1.21497 1.00696 0.94600 0.98133 1.21540 1.00069 0.96681 0.97099 1.21451 1.00070 0.98149 0.94433 1.65399 1.01964 1.21985 1.35189 1.23331 0.92152 0.95843 0.98622 1.22469 0.97459 0.97353 0.98344 1.22361 0.94228 0.97610 1.01638 1.23403 0.97179 0.91318 1.00414 0.94977 0.91083 0.93297 0.93674 0.93120 0.91705 0.90541 0.92642 0.90502 0.90875 0.91924 0.93082 0.91982 0.94839 0.92553 0.94094 0.91686 0.89551 0.92457 0.89797 0.90893 0.91149 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 6.29 71.98 0.45 -5.47 16 2 C 0.20 8.69 0.09 2.78 0.00 8.69 16 3 C -0.48 -27.11 8.03 25.60 0.21 -26.91 16 4 H 0.03 1.81 6.83 -2.91 -0.02 1.79 16 5 C 0.03 1.65 5.45 84.65 0.46 2.11 16 6 N -0.96 -62.78 13.96 21.45 0.30 -62.48 16 7 Si 0.93 47.26 23.86 68.60 1.64 48.90 16 8 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 9 H -0.33 -17.94 7.11 99.48 0.71 -17.23 16 10 H -0.17 -7.45 2.91 99.48 0.29 -7.16 16 11 C -0.09 -3.09 0.93 -10.79 -0.01 -3.10 16 12 C -0.13 -3.45 3.01 30.60 0.09 -3.36 16 13 C -0.11 -2.55 5.92 30.60 0.18 -2.37 16 14 C -0.11 -2.51 5.92 30.60 0.18 -2.32 16 15 C -0.12 -3.26 5.92 30.58 0.18 -3.08 16 16 C -0.10 -3.70 4.60 30.58 0.14 -3.55 16 17 N -0.52 -20.81 2.79 -837.88 -2.33 -23.14 16 18 C 0.03 1.01 5.39 86.65 0.47 1.48 16 19 C -0.12 -3.28 7.06 31.80 0.22 -3.06 16 20 C -0.12 -3.00 6.38 31.47 0.20 -2.80 16 21 C 0.00 0.13 4.06 86.45 0.35 0.48 16 22 H 0.03 1.36 3.25 -2.39 -0.01 1.36 16 23 H 0.07 2.32 4.63 -2.39 -0.01 2.31 16 24 H 0.05 2.00 6.78 -2.38 -0.02 1.98 16 25 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 26 H 0.05 2.01 6.11 -2.39 -0.01 1.99 16 27 H 0.06 1.74 6.01 -2.39 -0.01 1.73 16 28 H 0.08 2.02 3.71 -2.39 -0.01 2.01 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.45 6.53 -2.39 -0.02 1.43 16 36 H 0.06 1.97 6.59 -2.39 -0.02 1.96 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 2.18 4.07 -2.39 -0.01 2.17 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.68 7.89 -2.39 -0.02 1.66 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.07 2.03 3.32 -2.39 -0.01 2.02 16 44 H 0.06 1.94 6.58 -2.39 -0.02 1.93 16 Total: -1.00 -67.74 288.81 3.29 -64.44 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.56 Total: 15.54 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.13 Total: -43.26 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.04 Total: -85.62 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.64 Total: 48.90 kcal Total: -67.74 3.29 -64.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.122 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds