Wall clock time and date at job start Mon Mar 30 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47434 * 2 1 4 4 C 1.52997 * 109.47038 * 119.99975 * 2 1 3 5 5 H 1.09000 * 110.87700 * 302.39193 * 4 2 1 6 6 C 1.55139 * 110.99222 * 178.54493 * 4 2 1 7 7 C 1.54317 * 103.02103 * 206.25553 * 6 4 2 8 8 N 1.47440 * 107.23218 * 22.28561 * 7 6 4 9 9 C 1.46903 * 110.99832 * 123.26092 * 8 7 6 10 10 H 1.08997 * 110.05347 * 298.44994 * 9 8 7 11 11 C 1.53876 * 110.02879 * 177.03927 * 9 8 7 12 12 C 1.54268 * 106.59943 * 240.71149 * 11 9 8 13 13 C 1.54891 * 104.19257 * 336.38853 * 12 11 9 14 14 C 1.54265 * 110.03465 * 59.87209 * 9 8 7 15 15 H 1.08992 * 110.59885 * 24.16004 * 14 9 8 16 16 C 1.50698 * 110.48564 * 261.56922 * 14 9 8 17 17 H 1.08005 * 119.99819 * 3.77591 * 16 14 9 18 18 C 1.37875 * 120.00046 * 183.76932 * 16 14 9 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.47837 * 108.56768 * 0.98736 * 8 7 6 25 25 H 1.08996 * 109.47318 * 300.00446 * 1 2 3 26 26 H 1.09004 * 109.46849 * 60.00404 * 1 2 3 27 27 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47108 * 240.00097 * 2 1 3 29 29 H 1.08993 * 109.47283 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46822 * 300.00156 * 3 2 1 31 31 H 1.09005 * 109.47041 * 59.99431 * 3 2 1 32 32 H 1.09001 * 110.70486 * 87.87173 * 6 4 2 33 33 H 1.09001 * 110.85894 * 324.70795 * 6 4 2 34 34 H 1.09001 * 109.88803 * 262.87451 * 7 6 4 35 35 H 1.09002 * 109.88887 * 141.68956 * 7 6 4 36 36 H 1.09006 * 110.03044 * 121.43178 * 11 9 8 37 37 H 1.09003 * 110.07566 * 0.02562 * 11 9 8 38 38 H 1.08997 * 110.48364 * 217.71673 * 12 11 9 39 39 H 1.09001 * 110.59828 * 95.12356 * 12 11 9 40 40 H 1.08992 * 110.75891 * 279.62495 * 13 12 11 41 41 H 1.09004 * 110.91279 * 156.32407 * 13 12 11 42 42 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 43 43 H 1.09002 * 110.37387 * 94.73536 * 24 8 7 44 44 H 1.09000 * 110.37658 * 217.07152 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6550 -0.2505 2.1539 6 6 3.5903 -0.7738 1.2667 7 6 3.8862 -2.0275 2.1164 8 7 2.6860 -2.8823 2.0664 9 6 3.0148 -4.2225 1.5625 10 1 3.4038 -4.1547 0.5466 11 6 1.7632 -5.1172 1.5891 12 6 2.0869 -6.3000 2.5251 13 6 3.6335 -6.3828 2.5116 14 6 4.0553 -4.8927 2.4833 15 1 4.0129 -4.4650 3.4849 16 6 5.4403 -4.7475 1.9074 17 1 5.5922 -4.1760 1.0036 18 6 6.5136 -5.3441 2.5343 19 7 6.3287 -6.0403 3.6346 20 14 8.2305 -5.1636 1.8209 21 1 9.2010 -5.8939 2.6753 22 1 8.5976 -3.7255 1.7721 23 1 8.2579 -5.7282 0.4477 24 6 1.6764 -2.2265 1.2083 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 4.0009 0.1182 1.7399 33 1 3.9861 -0.8899 0.2577 34 1 4.0920 -1.7370 3.1466 35 1 4.7404 -2.5631 1.7022 36 1 1.5449 -5.4838 0.5860 37 1 0.9113 -4.5576 1.9753 38 1 1.6522 -7.2220 2.1390 39 1 1.7242 -6.1013 3.5336 40 1 3.9849 -6.9008 1.6193 41 1 4.0048 -6.8722 3.4121 42 1 5.4372 -6.1337 4.0053 43 1 1.7419 -2.6050 0.1882 44 1 0.6757 -2.3863 1.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:40 Heat of formation + Delta-G solvation = -44.208945 kcal Electronic energy + Delta-G solvation = -19799.200361 eV Core-core repulsion = 17135.094924 eV Total energy + Delta-G solvation = -2664.105437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79477 -38.56845 -35.79469 -34.65066 -31.46848 -30.36789 -28.93310 -27.90949 -27.47559 -25.66899 -23.04031 -22.27146 -21.18021 -20.64448 -20.23689 -19.04245 -17.44438 -16.52200 -15.95055 -15.64170 -15.48281 -15.17213 -14.71046 -14.45360 -14.12792 -14.01547 -13.90137 -13.58445 -13.36758 -12.96263 -12.94242 -12.73927 -12.51061 -12.36107 -12.01775 -11.94952 -11.88352 -11.74452 -11.53283 -11.42136 -11.38968 -11.30838 -11.27310 -11.08042 -10.50639 -10.40745 -9.11130 -8.50454 -6.23518 1.50601 1.57807 1.76582 2.57910 3.11614 3.28192 3.61349 3.77172 3.85730 3.91786 4.03557 4.19557 4.23485 4.34349 4.47460 4.50797 4.59661 4.62003 4.77801 4.78553 4.82875 4.86089 4.87725 4.92118 4.94880 5.00381 5.06075 5.06989 5.14574 5.16090 5.22813 5.27342 5.30457 5.33157 5.40229 5.46041 5.48177 5.56997 5.68763 6.06008 6.26703 6.30850 6.43617 6.74166 7.54331 8.85789 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.006611 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.905815 B = 4234.395189 C = 5194.201783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.081 4.081 5 H 0.083 0.917 6 C -0.126 4.126 7 C 0.034 3.966 8 N -0.532 5.532 9 C 0.096 3.904 10 H 0.013 0.987 11 C -0.107 4.107 12 C -0.113 4.113 13 C -0.114 4.114 14 C 0.040 3.960 15 H -0.004 1.004 16 C -0.593 4.593 17 H 0.038 0.962 18 C -0.028 4.028 19 N -0.941 5.941 20 Si 1.105 2.895 21 H -0.285 1.285 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.050 3.950 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.037 0.963 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 11.203 -7.418 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.100 4.100 5 H 0.101 0.899 6 C -0.164 4.164 7 C -0.093 4.093 8 N -0.256 5.256 9 C -0.012 4.012 10 H 0.031 0.969 11 C -0.145 4.145 12 C -0.151 4.151 13 C -0.152 4.152 14 C 0.021 3.979 15 H 0.014 0.986 16 C -0.631 4.631 17 H 0.056 0.944 18 C -0.227 4.227 19 N -0.579 5.579 20 Si 0.928 3.072 21 H -0.211 1.211 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.078 4.078 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.941 10.711 -6.686 16.070 hybrid contribution -0.804 0.104 -0.670 1.052 sum -10.745 10.815 -7.356 16.927 Atomic orbital electron populations 1.21820 0.94077 1.01901 1.02297 1.21049 0.96592 0.96446 0.96064 1.21816 1.00915 0.95092 1.02264 1.22329 0.94076 0.94325 0.99235 0.89896 1.22782 0.96742 0.97460 0.99462 1.22802 0.93501 0.93654 0.99384 1.63633 1.10052 1.02094 1.49868 1.22332 0.95060 0.88845 0.94990 0.96854 1.22138 0.96989 0.95916 0.99435 1.22297 0.95159 0.98228 0.99409 1.22517 0.95106 0.98772 0.98845 1.19547 0.93052 0.91541 0.93717 0.98610 1.22243 0.94008 1.35157 1.11682 0.94410 1.26991 1.07521 0.93067 0.95093 1.70891 1.25937 1.39925 1.21162 0.83086 0.71688 0.77006 0.75426 1.21094 1.19936 1.19954 1.23107 0.96278 0.93629 0.94740 0.92216 0.91750 0.92891 0.92117 0.93060 0.91740 0.92259 0.90013 0.92099 0.93204 0.92816 0.91548 0.90421 0.90757 0.92224 0.94340 0.94564 0.92480 0.94499 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.04 71.98 0.65 -1.77 16 2 C -0.08 -1.65 2.43 -10.80 -0.03 -1.67 16 3 C -0.14 -2.47 8.99 71.98 0.65 -1.83 16 4 C -0.08 -2.03 2.56 -9.41 -0.02 -2.06 16 5 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 6 C -0.13 -3.72 5.34 31.77 0.17 -3.55 16 7 C 0.03 1.36 6.28 86.65 0.54 1.90 16 8 N -0.53 -20.51 4.92 -856.16 -4.22 -24.73 16 9 C 0.10 4.12 1.94 45.64 0.09 4.20 16 10 H 0.01 0.62 7.62 -2.39 -0.02 0.60 16 11 C -0.11 -3.80 6.09 31.32 0.19 -3.61 16 12 C -0.11 -4.24 6.83 31.67 0.22 -4.03 16 13 C -0.11 -5.45 5.55 31.89 0.18 -5.27 16 14 C 0.04 2.06 1.49 -10.46 -0.02 2.05 16 15 H 0.00 -0.24 7.92 -2.39 -0.02 -0.26 16 16 C -0.59 -33.39 6.98 25.60 0.18 -33.21 16 17 H 0.04 2.14 6.80 -2.91 -0.02 2.12 16 18 C -0.03 -1.62 5.33 84.65 0.45 -1.17 16 19 N -0.94 -57.95 13.41 21.45 0.29 -57.67 16 20 Si 1.10 51.15 29.90 68.60 2.05 53.21 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C 0.05 1.48 4.36 86.77 0.38 1.86 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 28 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 29 H 0.05 0.94 7.32 -2.39 -0.02 0.92 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.06 1.80 8.04 -2.39 -0.02 1.78 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.50 4.92 -2.39 -0.01 2.49 16 36 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.08 2.50 7.05 -2.39 -0.02 2.48 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.04 1.86 6.30 -2.39 -0.02 1.85 16 42 H 0.26 16.34 5.24 -92.71 -0.49 15.86 16 43 H 0.04 1.12 7.64 -2.39 -0.02 1.10 16 44 H 0.08 2.23 7.71 -2.39 -0.02 2.21 16 Total: -1.00 -63.47 324.31 2.96 -60.51 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.21 Total: 16.84 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 3.63 Total: -48.16 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.93 Total: -82.40 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.21 kcal Total: -63.47 2.96 -60.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.302 kcal (2) G-P(sol) polarization free energy of solvation -63.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds