Wall clock time and date at job start Mon Mar 30 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46619 * 2 1 4 4 C 1.52997 * 109.46983 * 119.99851 * 2 1 3 5 5 H 1.09008 * 110.90367 * 302.41490 * 4 2 1 6 6 C 1.55143 * 110.98976 * 178.54749 * 4 2 1 7 7 C 1.54317 * 103.01771 * 206.25093 * 6 4 2 8 8 N 1.47446 * 107.23649 * 22.28727 * 7 6 4 9 9 C 1.46899 * 111.00364 * 123.24952 * 8 7 6 10 10 H 1.08996 * 110.01513 * 313.36230 * 9 8 7 11 11 C 1.54258 * 110.03244 * 191.91449 * 9 8 7 12 12 C 1.55030 * 104.28310 * 217.20046 * 11 9 8 13 13 C 1.54888 * 102.68248 * 37.76603 * 12 11 9 14 14 C 1.53877 * 110.02514 * 74.75019 * 9 8 7 15 15 H 1.09002 * 110.02956 * 238.56586 * 14 9 8 16 16 C 1.50692 * 110.07875 * 359.97438 * 14 9 8 17 17 H 1.08005 * 119.99890 * 2.73245 * 16 14 9 18 18 C 1.37876 * 120.00209 * 182.72126 * 16 14 9 19 19 N 1.31509 * 119.99875 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00005 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47028 * 60.00430 * 20 18 16 22 22 H 1.48502 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47226 * 300.00643 * 20 18 16 24 24 C 1.47848 * 108.56250 * 0.98424 * 8 7 6 25 25 H 1.09003 * 109.47263 * 300.00052 * 1 2 3 26 26 H 1.08996 * 109.47195 * 60.00362 * 1 2 3 27 27 H 1.09008 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46581 * 239.99646 * 2 1 3 29 29 H 1.09002 * 109.46603 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47000 * 299.99407 * 3 2 1 31 31 H 1.08995 * 109.47600 * 59.99780 * 3 2 1 32 32 H 1.09002 * 110.70604 * 87.87143 * 6 4 2 33 33 H 1.08993 * 110.70425 * 324.63841 * 6 4 2 34 34 H 1.08997 * 109.89385 * 262.87437 * 7 6 4 35 35 H 1.09007 * 110.01810 * 141.76482 * 7 6 4 36 36 H 1.08997 * 110.49100 * 335.79135 * 11 9 8 37 37 H 1.09006 * 110.48332 * 98.30196 * 11 9 8 38 38 H 1.09002 * 110.69893 * 279.52332 * 12 11 9 39 39 H 1.08998 * 110.87861 * 156.10199 * 12 11 9 40 40 H 1.08997 * 110.48855 * 203.48175 * 13 12 11 41 41 H 1.09001 * 110.48710 * 80.97260 * 13 12 11 42 42 H 0.97004 * 120.00062 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.37408 * 94.73726 * 24 8 7 44 44 H 1.09005 * 110.36994 * 217.07390 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6550 -0.2510 2.1542 6 6 3.5905 -0.7737 1.2667 7 6 3.8863 -2.0273 2.1165 8 7 2.6861 -2.8822 2.0666 9 6 3.0148 -4.2224 1.5626 10 1 3.6379 -4.1434 0.6718 11 6 1.7210 -4.9966 1.2370 12 6 2.0315 -6.4554 1.6599 13 6 2.8741 -6.2648 2.9455 14 6 3.7480 -5.0286 2.6490 15 1 4.7265 -5.3419 2.2849 16 6 3.9038 -4.1955 3.8950 17 1 3.4818 -3.2022 3.9366 18 6 4.5847 -4.7014 4.9819 19 7 5.0988 -5.9107 4.9310 20 14 4.7771 -3.6688 6.5267 21 1 3.4356 -3.3335 7.0682 22 1 5.5438 -4.4349 7.5418 23 1 5.5052 -2.4170 6.1979 24 6 1.6765 -2.2264 1.2083 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 4.0010 0.1184 1.7398 33 1 3.9834 -0.8910 0.2568 34 1 4.0921 -1.7369 3.1467 35 1 4.7412 -2.5639 1.7049 36 1 0.8852 -4.6035 1.8159 37 1 1.5031 -4.9439 0.1703 38 1 2.6114 -6.9645 0.8900 39 1 1.1131 -7.0007 1.8772 40 1 3.4989 -7.1396 3.1253 41 1 2.2263 -6.0774 3.8018 42 1 5.5782 -6.2665 5.6956 43 1 1.7419 -2.6050 0.1882 44 1 0.6758 -2.3863 1.6098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:45 Heat of formation + Delta-G solvation = -12.794482 kcal Electronic energy + Delta-G solvation = -19940.030949 eV Core-core repulsion = 17277.287745 eV Total energy + Delta-G solvation = -2662.743203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.30974 -36.88214 -34.34965 -32.30589 -29.99096 -28.91372 -27.53480 -26.76306 -25.64033 -23.83448 -21.88986 -20.55629 -19.75905 -19.16908 -18.26088 -16.47961 -15.48028 -15.06781 -14.68197 -14.17637 -14.04695 -13.69337 -13.17116 -12.82038 -12.75702 -12.70194 -12.22867 -12.16278 -11.90981 -11.48750 -11.37803 -11.31902 -10.86758 -10.79228 -10.53847 -10.36964 -10.34259 -10.22554 -10.04754 -10.02755 -9.85023 -9.65949 -9.43524 -9.02652 -8.46565 -8.17375 -7.25041 -5.79441 -3.75252 3.43596 3.48266 3.51556 4.59683 4.66604 4.80822 4.92683 5.07884 5.28571 5.44599 5.48835 5.57048 5.64124 5.64916 5.74754 5.76112 5.83721 5.85033 5.88491 5.94989 6.07004 6.12829 6.20498 6.21393 6.27740 6.33666 6.38714 6.44902 6.54714 6.62387 6.66411 6.79414 6.86619 6.93102 7.06396 7.26649 7.50287 7.73522 7.87720 8.05376 8.13831 8.26308 8.79000 9.34105 9.86676 11.32173 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.007256 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.094651 B = 3857.723293 C = 4785.184224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.079 0.921 6 C -0.141 4.141 7 C 0.060 3.940 8 N -0.495 5.495 9 C 0.085 3.915 10 H 0.018 0.982 11 C -0.114 4.114 12 C -0.131 4.131 13 C -0.090 4.090 14 C 0.052 3.948 15 H 0.023 0.977 16 C -0.490 4.490 17 H 0.089 0.911 18 C 0.051 3.949 19 N -0.902 5.902 20 Si 0.884 3.116 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.281 1.281 24 C 0.046 3.954 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.254 0.746 43 H 0.034 0.966 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 9.335 -9.776 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.112 4.112 5 H 0.098 0.902 6 C -0.180 4.180 7 C -0.068 4.068 8 N -0.219 5.219 9 C -0.024 4.024 10 H 0.036 0.964 11 C -0.152 4.152 12 C -0.169 4.169 13 C -0.129 4.129 14 C 0.033 3.967 15 H 0.041 0.959 16 C -0.528 4.528 17 H 0.107 0.893 18 C -0.148 4.148 19 N -0.543 5.543 20 Si 0.713 3.287 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.082 4.082 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.726 9.134 -9.155 14.577 hybrid contribution 0.529 0.476 0.110 0.720 sum -6.197 9.610 -9.045 14.580 Atomic orbital electron populations 1.21840 0.95411 1.01854 1.01239 1.21079 0.95557 0.95941 0.97897 1.21834 1.01146 0.96061 1.01226 1.22362 0.95417 0.95815 0.97571 0.90236 1.22949 0.95491 0.99483 1.00039 1.22735 0.92749 0.91225 1.00069 1.63744 1.08932 1.01687 1.47498 1.22613 0.94875 0.88797 0.96088 0.96411 1.22438 0.98309 0.96222 0.98222 1.22597 0.99260 0.95256 0.99803 1.22272 0.97070 0.99624 0.93913 1.19289 0.92992 0.91434 0.92988 0.95872 1.21622 1.31973 1.02325 0.96921 0.89316 1.25041 0.96384 0.94912 0.98440 1.69986 1.37905 1.15937 1.30435 0.86798 0.77882 0.80317 0.83706 1.20543 1.21929 1.20655 1.23079 0.97582 0.92250 0.95305 0.92754 0.93238 0.92467 0.91623 0.92598 0.93239 0.92804 0.91618 0.92393 0.90182 0.92860 0.91383 0.94074 0.93175 0.93387 0.92966 0.92849 0.93619 0.94761 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.04 37.16 0.34 -1.17 16 2 C -0.09 -0.97 2.43 -90.62 -0.22 -1.19 16 3 C -0.15 -1.46 8.99 37.16 0.33 -1.13 16 4 C -0.09 -1.28 2.56 -88.48 -0.23 -1.50 16 5 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 6 C -0.14 -2.07 5.35 -24.91 -0.13 -2.20 16 7 C 0.06 1.13 5.11 -2.83 -0.01 1.11 16 8 N -0.50 -9.71 3.59 -221.95 -0.80 -10.51 16 9 C 0.08 1.76 2.32 -66.60 -0.15 1.61 16 10 H 0.02 0.37 7.88 -51.93 -0.41 -0.04 16 11 C -0.11 -2.12 5.22 -25.00 -0.13 -2.25 16 12 C -0.13 -2.53 6.92 -24.66 -0.17 -2.70 16 13 C -0.09 -2.15 5.58 -25.07 -0.14 -2.29 16 14 C 0.05 1.29 2.66 -90.65 -0.24 1.05 16 15 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 16 C -0.49 -13.14 7.07 -34.44 -0.24 -13.39 16 17 H 0.09 2.35 4.29 -52.48 -0.23 2.12 16 18 C 0.05 1.44 5.34 -17.82 -0.10 1.34 16 19 N -0.90 -26.47 12.63 55.43 0.70 -25.77 16 20 Si 0.88 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.05 0.73 4.11 -2.30 -0.01 0.72 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.61 7.45 -51.92 -0.39 0.22 16 28 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.06 0.81 8.04 -51.93 -0.42 0.40 16 34 H 0.08 1.65 6.87 -51.93 -0.36 1.29 16 35 H 0.05 1.07 7.41 -51.93 -0.38 0.69 16 36 H 0.07 1.28 7.38 -51.93 -0.38 0.90 16 37 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.32 8.06 -51.93 -0.42 0.90 16 41 H 0.05 1.36 7.85 -51.93 -0.41 0.95 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.03 0.54 7.34 -51.93 -0.38 0.16 16 44 H 0.07 1.09 7.77 -51.93 -0.40 0.68 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -28.15 325.16 -9.66 -37.81 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.33 Total: -1.28 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.11 Total: -21.99 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.10 Total: -36.28 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.15 -9.66 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds