Wall clock time and date at job start Mon Mar 30 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46619 * 2 1 4 4 C 1.52997 * 109.46983 * 119.99851 * 2 1 3 5 5 H 1.09008 * 110.90367 * 302.41490 * 4 2 1 6 6 C 1.55143 * 110.98976 * 178.54749 * 4 2 1 7 7 C 1.54317 * 103.01771 * 206.25093 * 6 4 2 8 8 N 1.47446 * 107.23649 * 22.28727 * 7 6 4 9 9 C 1.46899 * 111.00364 * 123.24952 * 8 7 6 10 10 H 1.08996 * 110.01513 * 313.36230 * 9 8 7 11 11 C 1.54258 * 110.03244 * 191.91449 * 9 8 7 12 12 C 1.55030 * 104.28310 * 217.20046 * 11 9 8 13 13 C 1.54888 * 102.68248 * 37.76603 * 12 11 9 14 14 C 1.53877 * 110.02514 * 74.75019 * 9 8 7 15 15 H 1.09002 * 110.02956 * 238.56586 * 14 9 8 16 16 C 1.50692 * 110.07875 * 359.97438 * 14 9 8 17 17 H 1.08005 * 119.99890 * 2.73245 * 16 14 9 18 18 C 1.37876 * 120.00209 * 182.72126 * 16 14 9 19 19 N 1.31509 * 119.99875 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00005 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47028 * 60.00430 * 20 18 16 22 22 H 1.48502 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47226 * 300.00643 * 20 18 16 24 24 C 1.47848 * 108.56250 * 0.98424 * 8 7 6 25 25 H 1.09003 * 109.47263 * 300.00052 * 1 2 3 26 26 H 1.08996 * 109.47195 * 60.00362 * 1 2 3 27 27 H 1.09008 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46581 * 239.99646 * 2 1 3 29 29 H 1.09002 * 109.46603 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47000 * 299.99407 * 3 2 1 31 31 H 1.08995 * 109.47600 * 59.99780 * 3 2 1 32 32 H 1.09002 * 110.70604 * 87.87143 * 6 4 2 33 33 H 1.08993 * 110.70425 * 324.63841 * 6 4 2 34 34 H 1.08997 * 109.89385 * 262.87437 * 7 6 4 35 35 H 1.09007 * 110.01810 * 141.76482 * 7 6 4 36 36 H 1.08997 * 110.49100 * 335.79135 * 11 9 8 37 37 H 1.09006 * 110.48332 * 98.30196 * 11 9 8 38 38 H 1.09002 * 110.69893 * 279.52332 * 12 11 9 39 39 H 1.08998 * 110.87861 * 156.10199 * 12 11 9 40 40 H 1.08997 * 110.48855 * 203.48175 * 13 12 11 41 41 H 1.09001 * 110.48710 * 80.97260 * 13 12 11 42 42 H 0.97004 * 120.00062 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.37408 * 94.73726 * 24 8 7 44 44 H 1.09005 * 110.36994 * 217.07390 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6550 -0.2510 2.1542 6 6 3.5905 -0.7737 1.2667 7 6 3.8863 -2.0273 2.1165 8 7 2.6861 -2.8822 2.0666 9 6 3.0148 -4.2224 1.5626 10 1 3.6379 -4.1434 0.6718 11 6 1.7210 -4.9966 1.2370 12 6 2.0315 -6.4554 1.6599 13 6 2.8741 -6.2648 2.9455 14 6 3.7480 -5.0286 2.6490 15 1 4.7265 -5.3419 2.2849 16 6 3.9038 -4.1955 3.8950 17 1 3.4818 -3.2022 3.9366 18 6 4.5847 -4.7014 4.9819 19 7 5.0988 -5.9107 4.9310 20 14 4.7771 -3.6688 6.5267 21 1 3.4356 -3.3335 7.0682 22 1 5.5438 -4.4349 7.5418 23 1 5.5052 -2.4170 6.1979 24 6 1.6765 -2.2264 1.2083 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 4.0010 0.1184 1.7398 33 1 3.9834 -0.8910 0.2568 34 1 4.0921 -1.7369 3.1467 35 1 4.7412 -2.5639 1.7049 36 1 0.8852 -4.6035 1.8159 37 1 1.5031 -4.9439 0.1703 38 1 2.6114 -6.9645 0.8900 39 1 1.1131 -7.0007 1.8772 40 1 3.4989 -7.1396 3.1253 41 1 2.2263 -6.0774 3.8018 42 1 5.5782 -6.2665 5.6956 43 1 1.7419 -2.6050 0.1882 44 1 0.6758 -2.3863 1.6098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:44 Heat of formation + Delta-G solvation = -27.144760 kcal Electronic energy + Delta-G solvation = -19940.653223 eV Core-core repulsion = 17277.287745 eV Total energy + Delta-G solvation = -2663.365478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73748 -38.32363 -35.59535 -34.37625 -31.35919 -30.53951 -28.94757 -27.79889 -27.16361 -25.83590 -23.02635 -22.06833 -21.12381 -20.52535 -19.98289 -18.33347 -16.97028 -16.61085 -16.25958 -15.99673 -15.23321 -15.05656 -14.32455 -14.24573 -14.15118 -14.03864 -13.80664 -13.47128 -13.18848 -12.93619 -12.83652 -12.69495 -12.43834 -12.28392 -12.12850 -11.89079 -11.65948 -11.59667 -11.40221 -11.37112 -11.30346 -11.22886 -11.15476 -10.92883 -10.50989 -10.32966 -8.79780 -7.96279 -5.96449 1.42986 1.44605 1.51228 2.53213 3.29334 3.35331 3.72364 3.86663 3.93430 4.09430 4.13808 4.26547 4.36716 4.42336 4.55247 4.56143 4.64011 4.70555 4.86285 4.89614 4.94486 4.97166 4.98126 5.00319 5.07834 5.08248 5.13451 5.13924 5.23099 5.26393 5.34334 5.37043 5.40819 5.44880 5.52354 5.63114 5.64521 5.79672 5.97532 6.05458 6.40725 6.50975 6.78307 7.19135 7.68435 9.14907 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.007256 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.094651 B = 3857.723293 C = 4785.184224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.084 4.084 5 H 0.075 0.925 6 C -0.129 4.129 7 C 0.059 3.941 8 N -0.517 5.517 9 C 0.091 3.909 10 H 0.016 0.984 11 C -0.103 4.103 12 C -0.120 4.120 13 C -0.085 4.085 14 C 0.043 3.957 15 H -0.017 1.017 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.942 3.058 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.048 3.952 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.029 0.971 42 H 0.250 0.750 43 H 0.043 0.957 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 11.194 -11.288 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.103 4.103 5 H 0.093 0.907 6 C -0.168 4.168 7 C -0.068 4.068 8 N -0.241 5.241 9 C -0.018 4.018 10 H 0.034 0.966 11 C -0.141 4.141 12 C -0.158 4.158 13 C -0.124 4.124 14 C 0.024 3.976 15 H 0.001 0.999 16 C -0.526 4.526 17 H 0.110 0.890 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.769 3.231 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.197 1.197 24 C -0.079 4.079 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.546 11.015 -10.676 17.560 hybrid contribution 1.118 -0.108 0.574 1.262 sum -7.428 10.907 -10.102 16.619 Atomic orbital electron populations 1.21826 0.94455 1.01869 1.02041 1.21033 0.96303 0.96343 0.96233 1.21817 1.01019 0.95229 1.02033 1.22322 0.94415 0.94622 0.98919 0.90670 1.22853 0.96517 0.97653 0.99729 1.22607 0.91987 0.92896 0.99343 1.63574 1.09817 1.01559 1.49145 1.22398 0.95706 0.89458 0.94211 0.96580 1.22376 0.96729 0.94746 1.00239 1.22527 0.99454 0.96534 0.97289 1.22057 0.96774 0.97921 0.95652 1.19285 0.91985 0.92565 0.93787 0.99909 1.21974 1.30661 1.02477 0.97440 0.88976 1.25776 0.96768 0.95956 1.01451 1.70136 1.39231 1.17530 1.30992 0.85861 0.77842 0.79049 0.80321 1.20127 1.22150 1.19747 1.23113 0.96425 0.93366 0.95004 0.92697 0.91757 0.92859 0.91549 0.92814 0.91802 0.92693 0.90285 0.91347 0.92684 0.95217 0.91301 0.90781 0.91934 0.91012 0.95751 0.95228 0.94099 0.93846 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.04 71.98 0.65 -1.83 16 2 C -0.08 -1.55 2.43 -10.79 -0.03 -1.58 16 3 C -0.14 -2.41 8.99 71.98 0.65 -1.77 16 4 C -0.08 -2.10 2.56 -9.41 -0.02 -2.13 16 5 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 6 C -0.13 -3.56 5.35 31.78 0.17 -3.39 16 7 C 0.06 2.24 5.11 86.65 0.44 2.69 16 8 N -0.52 -19.94 3.59 -856.13 -3.07 -23.02 16 9 C 0.09 3.75 2.32 45.64 0.11 3.86 16 10 H 0.02 0.67 7.88 -2.39 -0.02 0.65 16 11 C -0.10 -3.58 5.22 31.72 0.17 -3.41 16 12 C -0.12 -4.44 6.92 31.93 0.22 -4.22 16 13 C -0.09 -4.17 5.58 31.67 0.18 -4.00 16 14 C 0.04 2.19 2.66 -10.82 -0.03 2.16 16 15 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 16 C -0.49 -26.90 7.07 25.60 0.18 -26.72 16 17 H 0.09 4.97 4.29 -2.91 -0.01 4.96 16 18 C 0.00 -0.24 5.34 84.66 0.45 0.22 16 19 N -0.94 -57.24 12.63 21.45 0.27 -56.97 16 20 Si 0.94 45.93 29.54 68.60 2.03 47.95 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.05 1.42 4.11 86.77 0.36 1.78 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.96 7.45 -2.38 -0.02 0.94 16 28 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 29 H 0.05 0.93 7.32 -2.39 -0.02 0.91 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 34 H 0.05 2.31 6.87 -2.39 -0.02 2.29 16 35 H 0.03 1.23 7.41 -2.38 -0.02 1.21 16 36 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 37 H 0.07 2.13 8.10 -2.38 -0.02 2.11 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.02 1.27 8.06 -2.39 -0.02 1.25 16 41 H 0.03 1.54 7.85 -2.39 -0.02 1.52 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.04 1.22 7.34 -2.38 -0.02 1.20 16 44 H 0.07 2.10 7.77 -2.38 -0.02 2.08 16 Total: -1.00 -62.72 325.16 3.64 -59.08 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.93 Total: 11.30 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.49 Total: -38.35 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.80 Total: -79.98 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -62.72 3.64 -59.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.939 kcal (2) G-P(sol) polarization free energy of solvation -62.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds