Wall clock time and date at job start Mon Mar 30 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.52999 * 109.46835 * 119.99872 * 2 1 3 5 5 H 1.09003 * 110.76652 * 296.80181 * 4 2 1 6 6 C 1.55137 * 110.70842 * 173.60061 * 4 2 1 7 7 C 1.54907 * 101.65234 * 205.96593 * 6 4 2 8 8 N 1.47835 * 104.79886 * 37.06967 * 7 6 4 9 9 C 1.46905 * 111.00101 * 213.63352 * 8 7 6 10 10 H 1.09000 * 110.05758 * 312.23493 * 9 8 7 11 11 C 1.54472 * 110.11905 * 73.48800 * 9 8 7 12 12 C 1.54884 * 104.09802 * 142.72660 * 11 9 8 13 13 C 1.54895 * 102.91848 * 322.30429 * 12 11 9 14 14 C 1.53869 * 110.03368 * 190.81397 * 9 8 7 15 15 H 1.09003 * 110.02863 * 121.43578 * 14 9 8 16 16 C 1.50704 * 110.03423 * 0.02562 * 14 9 8 17 17 H 1.08001 * 119.99828 * 8.01687 * 16 14 9 18 18 C 1.37873 * 119.99917 * 188.01931 * 16 14 9 19 19 N 1.31511 * 120.00356 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99701 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47432 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47191 * 119.99841 * 20 18 16 23 23 H 1.48506 * 109.46737 * 239.99472 * 20 18 16 24 24 C 1.47441 * 108.56945 * 335.90206 * 8 7 6 25 25 H 1.09000 * 109.47498 * 300.00437 * 1 2 3 26 26 H 1.09002 * 109.46797 * 60.00176 * 1 2 3 27 27 H 1.08995 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47498 * 239.99563 * 2 1 3 29 29 H 1.08999 * 109.46894 * 179.97438 * 3 2 1 30 30 H 1.08988 * 109.47035 * 299.99797 * 3 2 1 31 31 H 1.09006 * 109.46815 * 59.99934 * 3 2 1 32 32 H 1.08999 * 110.98887 * 324.05553 * 6 4 2 33 33 H 1.08999 * 110.99389 * 87.87019 * 6 4 2 34 34 H 1.09000 * 110.36956 * 278.23370 * 7 6 4 35 35 H 1.09001 * 110.36943 * 155.90288 * 7 6 4 36 36 H 1.09007 * 110.39967 * 24.14636 * 11 9 8 37 37 H 1.08992 * 110.66501 * 261.44145 * 11 9 8 38 38 H 1.09000 * 110.75982 * 203.89754 * 12 11 9 39 39 H 1.09006 * 110.75874 * 80.71013 * 12 11 9 40 40 H 1.08997 * 110.48552 * 156.52844 * 13 12 11 41 41 H 1.09003 * 110.48085 * 279.03599 * 13 12 11 42 42 H 0.97004 * 120.00346 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.88817 * 120.39484 * 24 8 7 44 44 H 1.08999 * 109.89093 * 241.58973 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7354 -0.1921 2.1523 6 6 3.5824 -0.8796 1.2001 7 6 3.7970 -2.1303 2.0885 8 7 2.6501 -3.0117 1.7831 9 6 2.2396 -3.7722 2.9710 10 1 3.1115 -4.2193 3.4484 11 6 1.5120 -2.8455 3.9700 12 6 0.3904 -3.7349 4.5616 13 6 -0.0690 -4.5704 3.3409 14 6 1.2358 -4.8687 2.5740 15 1 1.6206 -5.8480 2.8588 16 6 0.9838 -4.8248 1.0889 17 1 1.5787 -4.1799 0.4591 18 6 -0.0063 -5.6078 0.5342 19 7 -0.7304 -6.3933 1.3010 20 14 -0.3181 -5.5537 -1.3068 21 1 0.6247 -4.5976 -1.9408 22 1 -0.1138 -6.9070 -1.8834 23 1 -1.7137 -5.1135 -1.5597 24 6 1.5412 -2.1814 1.2781 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9239 -1.0613 0.1810 33 1 4.0783 -0.0078 1.6268 34 1 3.7920 -1.8524 3.1425 35 1 4.7340 -2.6233 1.8296 36 1 1.0847 -1.9877 3.4505 37 1 2.1924 -2.5168 4.7554 38 1 -0.4281 -3.1231 4.9410 39 1 0.7834 -4.3814 5.3463 40 1 -0.5395 -5.4975 3.6685 41 1 -0.7553 -3.9939 2.7206 42 1 -1.4267 -6.9445 0.9107 43 1 1.2679 -2.4998 0.2722 44 1 0.6816 -2.2666 1.9428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:47 Heat of formation + Delta-G solvation = -4.055258 kcal Electronic energy + Delta-G solvation = -20446.192198 eV Core-core repulsion = 17783.827956 eV Total energy + Delta-G solvation = -2662.364242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60396 -36.73255 -34.20834 -32.25001 -30.01574 -28.32888 -27.91989 -26.72046 -25.61255 -23.89793 -21.66893 -20.86924 -19.49391 -19.32774 -18.10353 -16.61255 -15.41337 -14.77589 -14.61158 -14.32677 -14.06773 -13.67563 -12.91304 -12.83274 -12.74738 -12.44762 -12.17386 -12.07524 -12.00720 -11.39741 -11.29578 -10.99751 -10.85181 -10.72450 -10.59342 -10.47682 -10.32472 -10.16762 -10.03965 -9.97069 -9.74124 -9.69772 -9.33782 -8.97914 -8.40461 -8.20039 -7.23220 -5.80870 -3.77370 3.39206 3.48086 3.52528 4.59588 4.82888 4.94784 4.96945 5.13082 5.38470 5.47606 5.54842 5.63216 5.67786 5.72496 5.80435 5.82449 5.88585 5.93650 6.00309 6.03435 6.13790 6.20799 6.25095 6.32453 6.36480 6.41722 6.46265 6.53497 6.56251 6.65702 6.72623 6.78989 6.84582 7.04951 7.07862 7.30739 7.45362 7.77926 7.95206 8.08986 8.14259 8.24056 8.75935 9.31415 9.84542 11.29518 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.009665 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.206360 B = 2896.227608 C = 3753.226641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.065 0.935 6 C -0.121 4.121 7 C 0.035 3.965 8 N -0.496 5.496 9 C 0.083 3.917 10 H 0.057 0.943 11 C -0.156 4.156 12 C -0.132 4.132 13 C -0.085 4.085 14 C 0.050 3.950 15 H 0.021 0.979 16 C -0.492 4.492 17 H 0.091 0.909 18 C 0.052 3.948 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.063 3.937 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 12.340 1.314 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.202 4.202 4 C -0.132 4.132 5 H 0.083 0.917 6 C -0.159 4.159 7 C -0.093 4.093 8 N -0.219 5.219 9 C -0.026 4.026 10 H 0.075 0.925 11 C -0.195 4.195 12 C -0.170 4.170 13 C -0.123 4.123 14 C 0.031 3.969 15 H 0.039 0.961 16 C -0.530 4.530 17 H 0.109 0.891 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.709 3.291 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.064 4.064 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.754 11.831 0.911 12.783 hybrid contribution -0.521 0.459 -0.249 0.737 sum 4.234 12.289 0.662 13.015 Atomic orbital electron populations 1.21875 0.95332 1.02658 1.00880 1.21061 0.95731 0.95384 0.98086 1.21840 1.00780 0.96459 1.01075 1.22624 0.95257 0.98033 0.97296 0.91699 1.22711 0.95725 0.97076 1.00371 1.23047 0.96382 0.92843 0.97048 1.63774 1.05093 1.22908 1.30077 1.22664 0.97424 0.94955 0.87545 0.92508 1.23162 0.98190 0.99445 0.98735 1.22595 0.96948 0.98204 0.99257 1.22226 0.99321 0.97792 0.93010 1.19295 0.89596 0.91782 0.96218 0.96057 1.21752 1.15734 1.23157 0.92374 0.89135 1.25019 0.96806 0.95972 0.96911 1.70023 1.22468 1.27287 1.34263 0.86723 0.77645 0.77646 0.87107 1.19690 1.21561 1.21620 1.22947 0.94137 0.87179 1.02138 0.93121 0.93309 0.91580 0.91087 0.92886 0.93221 0.93148 0.91120 0.92183 0.94707 0.91435 0.91332 0.94029 0.93768 0.93130 0.92481 0.92962 0.93740 0.90126 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.96 37.16 0.33 -1.70 16 2 C -0.08 -1.12 2.30 -90.62 -0.21 -1.33 16 3 C -0.14 -1.61 9.04 37.16 0.34 -1.27 16 4 C -0.11 -1.67 2.36 -88.80 -0.21 -1.88 16 5 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 6 C -0.12 -1.69 5.68 -24.59 -0.14 -1.83 16 7 C 0.03 0.56 6.51 -2.30 -0.01 0.55 16 8 N -0.50 -9.72 3.84 -221.83 -0.85 -10.57 16 9 C 0.08 1.71 2.84 -66.49 -0.19 1.52 16 10 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 11 C -0.16 -2.86 5.17 -24.96 -0.13 -2.99 16 12 C -0.13 -2.53 6.90 -24.74 -0.17 -2.70 16 13 C -0.09 -1.99 4.71 -25.07 -0.12 -2.11 16 14 C 0.05 1.22 2.77 -90.66 -0.25 0.97 16 15 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 16 C -0.49 -13.01 6.80 -34.44 -0.23 -13.25 16 17 H 0.09 2.38 4.32 -52.49 -0.23 2.16 16 18 C 0.05 1.44 5.26 -17.82 -0.09 1.34 16 19 N -0.90 -25.96 11.87 55.43 0.66 -25.31 16 20 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.06 1.18 2.66 -2.83 -0.01 1.17 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.02 7.05 -51.93 -0.37 0.65 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.05 0.56 7.48 -51.93 -0.39 0.17 16 30 H 0.05 0.51 8.14 -51.94 -0.42 0.08 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.03 0.54 7.24 -51.93 -0.38 0.17 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.25 5.10 -51.92 -0.26 0.99 16 37 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.44 7.75 -51.93 -0.40 1.04 16 41 H 0.05 1.31 7.74 -51.93 -0.40 0.91 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.08 1.69 6.04 -51.93 -0.31 1.38 16 44 H 0.07 1.40 4.96 -51.93 -0.26 1.15 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -27.53 317.98 -9.54 -37.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.02 Total: 0.98 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -1.10 Total: -23.52 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.19 Total: -35.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.53 -9.54 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.023 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds