Wall clock time and date at job start Mon Mar 30 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.52999 * 109.46835 * 119.99872 * 2 1 3 5 5 H 1.09003 * 110.76652 * 296.80181 * 4 2 1 6 6 C 1.55137 * 110.70842 * 173.60061 * 4 2 1 7 7 C 1.54907 * 101.65234 * 205.96593 * 6 4 2 8 8 N 1.47835 * 104.79886 * 37.06967 * 7 6 4 9 9 C 1.46905 * 111.00101 * 213.63352 * 8 7 6 10 10 H 1.09000 * 110.05758 * 312.23493 * 9 8 7 11 11 C 1.54472 * 110.11905 * 73.48800 * 9 8 7 12 12 C 1.54884 * 104.09802 * 142.72660 * 11 9 8 13 13 C 1.54895 * 102.91848 * 322.30429 * 12 11 9 14 14 C 1.53869 * 110.03368 * 190.81397 * 9 8 7 15 15 H 1.09003 * 110.02863 * 121.43578 * 14 9 8 16 16 C 1.50704 * 110.03423 * 0.02562 * 14 9 8 17 17 H 1.08001 * 119.99828 * 8.01687 * 16 14 9 18 18 C 1.37873 * 119.99917 * 188.01931 * 16 14 9 19 19 N 1.31511 * 120.00356 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99701 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47432 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47191 * 119.99841 * 20 18 16 23 23 H 1.48506 * 109.46737 * 239.99472 * 20 18 16 24 24 C 1.47441 * 108.56945 * 335.90206 * 8 7 6 25 25 H 1.09000 * 109.47498 * 300.00437 * 1 2 3 26 26 H 1.09002 * 109.46797 * 60.00176 * 1 2 3 27 27 H 1.08995 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47498 * 239.99563 * 2 1 3 29 29 H 1.08999 * 109.46894 * 179.97438 * 3 2 1 30 30 H 1.08988 * 109.47035 * 299.99797 * 3 2 1 31 31 H 1.09006 * 109.46815 * 59.99934 * 3 2 1 32 32 H 1.08999 * 110.98887 * 324.05553 * 6 4 2 33 33 H 1.08999 * 110.99389 * 87.87019 * 6 4 2 34 34 H 1.09000 * 110.36956 * 278.23370 * 7 6 4 35 35 H 1.09001 * 110.36943 * 155.90288 * 7 6 4 36 36 H 1.09007 * 110.39967 * 24.14636 * 11 9 8 37 37 H 1.08992 * 110.66501 * 261.44145 * 11 9 8 38 38 H 1.09000 * 110.75982 * 203.89754 * 12 11 9 39 39 H 1.09006 * 110.75874 * 80.71013 * 12 11 9 40 40 H 1.08997 * 110.48552 * 156.52844 * 13 12 11 41 41 H 1.09003 * 110.48085 * 279.03599 * 13 12 11 42 42 H 0.97004 * 120.00346 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.88817 * 120.39484 * 24 8 7 44 44 H 1.08999 * 109.89093 * 241.58973 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7354 -0.1921 2.1523 6 6 3.5824 -0.8796 1.2001 7 6 3.7970 -2.1303 2.0885 8 7 2.6501 -3.0117 1.7831 9 6 2.2396 -3.7722 2.9710 10 1 3.1115 -4.2193 3.4484 11 6 1.5120 -2.8455 3.9700 12 6 0.3904 -3.7349 4.5616 13 6 -0.0690 -4.5704 3.3409 14 6 1.2358 -4.8687 2.5740 15 1 1.6206 -5.8480 2.8588 16 6 0.9838 -4.8248 1.0889 17 1 1.5787 -4.1799 0.4591 18 6 -0.0063 -5.6078 0.5342 19 7 -0.7304 -6.3933 1.3010 20 14 -0.3181 -5.5537 -1.3068 21 1 0.6247 -4.5976 -1.9408 22 1 -0.1138 -6.9070 -1.8834 23 1 -1.7137 -5.1135 -1.5597 24 6 1.5412 -2.1814 1.2781 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9239 -1.0613 0.1810 33 1 4.0783 -0.0078 1.6268 34 1 3.7920 -1.8524 3.1425 35 1 4.7340 -2.6233 1.8296 36 1 1.0847 -1.9877 3.4505 37 1 2.1924 -2.5168 4.7554 38 1 -0.4281 -3.1231 4.9410 39 1 0.7834 -4.3814 5.3463 40 1 -0.5395 -5.4975 3.6685 41 1 -0.7553 -3.9939 2.7206 42 1 -1.4267 -6.9445 0.9107 43 1 1.2679 -2.4998 0.2722 44 1 0.6816 -2.2666 1.9428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:47 Heat of formation + Delta-G solvation = -18.190979 kcal Electronic energy + Delta-G solvation = -20446.805169 eV Core-core repulsion = 17783.827956 eV Total energy + Delta-G solvation = -2662.977213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07123 -38.17261 -35.55319 -34.27595 -31.41409 -29.88369 -29.50301 -27.84002 -27.12845 -25.84195 -22.96738 -22.20090 -21.16524 -20.58443 -19.78426 -18.38221 -17.03532 -16.54584 -16.05724 -15.82733 -15.62275 -14.93902 -14.50060 -14.26905 -14.00787 -13.88951 -13.68163 -13.37363 -13.22982 -12.95829 -12.84366 -12.69751 -12.36943 -12.21226 -12.07338 -12.01624 -11.72712 -11.54341 -11.50519 -11.37520 -11.25191 -11.19187 -11.03511 -10.83847 -10.42170 -10.34104 -8.72560 -7.95589 -5.96087 1.39255 1.42873 1.53511 2.52495 3.35050 3.41022 3.78454 3.83528 3.98092 4.09182 4.10827 4.28331 4.34823 4.49255 4.53759 4.65812 4.67572 4.75354 4.83506 4.86655 4.91526 4.97740 5.01366 5.04727 5.05962 5.10148 5.15287 5.17460 5.21207 5.30806 5.35695 5.38939 5.45154 5.48940 5.55605 5.61781 5.68769 5.84779 6.00617 6.08697 6.45426 6.56319 6.78474 7.18754 7.68633 9.14361 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.009665 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.206360 B = 2896.227608 C = 3753.226641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.102 4.102 5 H 0.075 0.925 6 C -0.111 4.111 7 C 0.034 3.966 8 N -0.523 5.523 9 C 0.089 3.911 10 H 0.059 0.941 11 C -0.143 4.143 12 C -0.122 4.122 13 C -0.075 4.075 14 C 0.039 3.961 15 H -0.017 1.017 16 C -0.486 4.486 17 H 0.092 0.908 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.935 3.065 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.288 1.288 24 C 0.071 3.929 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.249 0.751 43 H 0.048 0.952 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 15.246 1.626 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.148 4.148 7 C -0.093 4.093 8 N -0.245 5.245 9 C -0.020 4.020 10 H 0.077 0.923 11 C -0.182 4.182 12 C -0.160 4.160 13 C -0.114 4.114 14 C 0.021 3.979 15 H 0.001 0.999 16 C -0.525 4.525 17 H 0.109 0.891 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.763 3.237 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.215 1.215 24 C -0.057 4.057 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.142 14.753 1.216 16.027 hybrid contribution -0.932 -0.499 -0.353 1.114 sum 5.211 14.254 0.863 15.201 Atomic orbital electron populations 1.21862 0.95739 1.01063 1.02011 1.21043 0.95411 0.96923 0.96794 1.21774 1.01314 0.94378 1.01989 1.22534 0.95913 0.95278 0.98463 0.90678 1.22683 0.94939 0.97154 1.00064 1.23115 0.94808 0.93124 0.98297 1.63585 1.06388 1.24544 1.30012 1.22423 0.96494 0.94476 0.88607 0.92258 1.23045 0.97875 0.98602 0.98664 1.22514 0.98003 0.98054 0.97447 1.21953 0.98037 0.96784 0.94604 1.19313 0.91404 0.91715 0.95508 0.99851 1.22058 1.14817 1.21997 0.93634 0.89058 1.25703 0.97174 0.96202 1.00521 1.70165 1.23220 1.28413 1.35651 0.85837 0.77533 0.77375 0.82938 1.18868 1.21829 1.21478 1.22707 0.93489 0.89887 0.99572 0.92251 0.91951 0.94504 0.92335 0.91958 0.92263 0.92345 0.91369 0.89116 0.93446 0.91126 0.91037 0.91031 0.91771 0.91934 0.95505 0.95487 0.94154 0.93386 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.96 71.98 0.64 -3.21 16 2 C -0.08 -2.04 2.30 -10.79 -0.02 -2.07 16 3 C -0.14 -2.55 9.04 71.98 0.65 -1.90 16 4 C -0.10 -2.80 2.36 -9.61 -0.02 -2.82 16 5 H 0.07 1.94 7.92 -2.39 -0.02 1.92 16 6 C -0.11 -2.72 5.68 31.98 0.18 -2.54 16 7 C 0.03 1.00 6.51 86.78 0.57 1.56 16 8 N -0.52 -20.03 3.84 -855.75 -3.28 -23.32 16 9 C 0.09 3.61 2.84 45.71 0.13 3.74 16 10 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 11 C -0.14 -4.91 5.17 31.74 0.16 -4.75 16 12 C -0.12 -4.53 6.90 31.89 0.22 -4.32 16 13 C -0.08 -3.65 4.71 31.67 0.15 -3.50 16 14 C 0.04 2.00 2.77 -10.82 -0.03 1.97 16 15 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 16 C -0.49 -26.63 6.80 25.60 0.17 -26.46 16 17 H 0.09 4.94 4.32 -2.91 -0.01 4.93 16 18 C 0.00 -0.02 5.26 84.65 0.45 0.43 16 19 N -0.93 -56.16 11.87 21.45 0.25 -55.91 16 20 Si 0.94 45.68 29.54 68.60 2.03 47.70 16 21 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 C 0.07 2.62 2.66 86.65 0.23 2.85 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.14 7.05 -2.39 -0.02 1.13 16 28 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 29 H 0.06 1.05 7.48 -2.39 -0.02 1.04 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.73 8.02 -2.39 -0.02 1.71 16 33 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.05 1.29 7.24 -2.39 -0.02 1.27 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.44 5.10 -2.38 -0.01 2.43 16 37 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.03 1.41 7.75 -2.39 -0.02 1.39 16 41 H 0.03 1.40 7.74 -2.39 -0.02 1.38 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.05 2.07 6.04 -2.39 -0.01 2.05 16 44 H 0.05 1.96 4.96 -2.39 -0.01 1.95 16 Total: -1.00 -61.75 317.98 3.41 -58.34 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.94 Total: 14.18 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.48 Total: -41.00 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.03 Total: -79.22 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -61.75 3.41 -58.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.146 kcal (2) G-P(sol) polarization free energy of solvation -61.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds