Wall clock time and date at job start Mon Mar 30 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 H 1.09004 * 109.45348 * 57.67218 * 3 2 1 5 5 C 1.53040 * 109.46246 * 297.70652 * 3 2 1 6 6 C 1.53114 * 109.28257 * 180.80368 * 5 3 2 7 7 C 1.53127 * 109.16044 * 57.64868 * 6 5 3 8 8 C 1.53038 * 109.27926 * 302.35084 * 7 6 5 9 9 N 1.46843 * 109.52555 * 59.17656 * 8 7 6 10 10 C 1.46900 * 111.00326 * 174.16226 * 9 8 7 11 11 H 1.08992 * 110.43805 * 175.48878 * 10 9 8 12 12 C 1.54891 * 110.48426 * 52.80291 * 10 9 8 13 13 C 1.54970 * 102.77708 * 203.41044 * 12 10 9 14 14 C 1.54265 * 104.15843 * 37.88419 * 13 12 10 15 15 H 1.08999 * 110.03086 * 95.76102 * 14 13 12 16 16 C 1.50698 * 110.03459 * 217.13717 * 14 13 12 17 17 H 1.08002 * 120.00340 * 117.91083 * 16 14 13 18 18 C 1.37872 * 120.00134 * 297.91337 * 16 14 13 19 19 N 1.31517 * 120.00259 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 120.00250 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46828 * 60.00437 * 20 18 16 22 22 H 1.48493 * 109.47337 * 300.00382 * 20 18 16 23 23 H 1.48501 * 109.47169 * 179.97438 * 20 18 16 24 24 C 1.53872 * 106.64332 * 336.44687 * 14 13 12 25 25 H 1.09002 * 109.46722 * 65.70943 * 1 2 3 26 26 H 1.08999 * 109.47132 * 185.70941 * 1 2 3 27 27 H 1.09000 * 109.47093 * 305.71474 * 1 2 3 28 28 H 1.09002 * 109.47198 * 239.99416 * 2 1 3 29 29 H 1.09007 * 109.46652 * 119.99721 * 2 1 3 30 30 H 1.09008 * 109.49741 * 300.74615 * 5 3 2 31 31 H 1.08995 * 109.50436 * 60.85826 * 5 3 2 32 32 H 1.09001 * 109.52862 * 177.55472 * 6 5 3 33 33 H 1.09000 * 109.52435 * 297.68426 * 6 5 3 34 34 H 1.09004 * 109.50033 * 62.28955 * 7 6 5 35 35 H 1.08995 * 109.50370 * 182.40599 * 7 6 5 36 36 H 1.08998 * 109.45858 * 299.16322 * 8 7 6 37 37 H 1.08997 * 109.45942 * 179.19638 * 8 7 6 38 38 H 1.09003 * 110.75576 * 321.69071 * 12 10 9 39 39 H 1.08996 * 110.75946 * 84.88067 * 12 10 9 40 40 H 1.08998 * 110.46956 * 279.23421 * 13 12 10 41 41 H 1.08994 * 110.52920 * 156.56842 * 13 12 10 42 42 H 0.97000 * 119.99513 * 0.02562 * 19 18 16 43 43 H 1.09011 * 110.03139 * 119.25652 * 24 14 13 44 44 H 1.09000 * 110.03721 * 240.68814 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6429 1.9679 0.8685 5 6 1.5776 2.1468 -1.2775 6 6 2.1070 3.5835 -1.2827 7 6 3.6342 3.5568 -1.1740 8 6 4.0370 2.8115 0.1005 9 7 3.5075 1.4426 0.0568 10 6 3.9901 0.6546 1.1987 11 1 3.5297 -0.3333 1.2012 12 6 3.7008 1.3941 2.5286 13 6 4.7531 0.7901 3.4926 14 6 6.0122 0.6193 2.6178 15 1 6.6724 1.4777 2.7420 16 6 6.7361 -0.6470 2.9964 17 1 6.8555 -1.4383 2.2711 18 6 7.2460 -0.7955 4.2687 19 7 7.1011 0.1681 5.1519 20 14 8.1427 -2.3656 4.7383 21 1 9.3235 -2.5441 3.8556 22 1 7.2275 -3.5243 4.5811 23 1 8.5907 -2.2761 6.1513 24 6 5.5275 0.5336 1.1599 25 1 -0.3633 0.4228 -0.9367 26 1 -0.3633 -1.0226 0.1022 27 1 -0.3633 0.5999 0.8344 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9629 1.6138 -2.1468 31 1 0.4882 2.1603 -1.3116 32 1 1.8165 4.0755 -2.2110 33 1 1.6901 4.1284 -0.4357 34 1 4.0518 3.0460 -2.0416 35 1 4.0141 4.5776 -1.1342 36 1 3.6305 3.3306 0.9685 37 1 5.1240 2.7783 0.1736 38 1 3.8532 2.4674 2.4149 39 1 2.6891 1.1837 2.8754 40 1 4.4158 -0.1759 3.8684 41 1 4.9519 1.4734 4.3182 42 1 6.6351 0.9832 4.9082 43 1 5.9518 1.3510 0.5767 44 1 5.8159 -0.4239 0.7262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260915374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:07 Heat of formation + Delta-G solvation = -26.217847 kcal Electronic energy + Delta-G solvation = -19899.235819 eV Core-core repulsion = 17235.910535 eV Total energy + Delta-G solvation = -2663.325284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80521 -36.75685 -33.96708 -33.32876 -31.28105 -29.15088 -28.11248 -26.57517 -24.31396 -23.90427 -23.09146 -20.75578 -20.33715 -19.00461 -18.43967 -16.77064 -16.24255 -15.04300 -14.87622 -14.28677 -14.12786 -13.79905 -13.68374 -13.30865 -13.21835 -12.74839 -12.58269 -12.37523 -11.74616 -11.72333 -11.47474 -11.11886 -11.01353 -10.88475 -10.83429 -10.68798 -10.37217 -10.33999 -10.29549 -10.07775 -9.84852 -9.67062 -9.56878 -9.36990 -8.34480 -8.26478 -7.81337 -6.25387 -3.97308 3.47119 3.48568 3.67196 4.14094 4.58725 4.80945 4.83942 4.96802 5.12846 5.24606 5.36039 5.41750 5.43108 5.49674 5.55224 5.61174 5.69343 5.74897 5.79233 5.83700 5.95433 5.98014 6.02798 6.04262 6.10991 6.17871 6.29924 6.32276 6.37074 6.38553 6.51455 6.54207 6.65597 6.71301 6.92696 7.04751 7.18829 7.46542 7.55122 7.59167 7.74127 8.34744 8.52071 8.97915 9.74369 11.11890 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.005505 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.303710 B = 5085.419603 C = 5490.797264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.087 3.913 4 H 0.037 0.963 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.116 4.116 8 C 0.049 3.951 9 N -0.526 5.526 10 C 0.080 3.920 11 H 0.086 0.914 12 C -0.159 4.159 13 C -0.105 4.105 14 C 0.030 3.970 15 H 0.014 0.986 16 C -0.590 4.590 17 H 0.048 0.952 18 C 0.017 3.983 19 N -0.916 5.916 20 Si 1.065 2.935 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.099 4.099 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.272 0.728 43 H 0.047 0.953 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 4.535 -11.398 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.021 4.021 4 H 0.054 0.946 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.079 4.079 9 N -0.250 5.250 10 C -0.028 4.028 11 H 0.104 0.896 12 C -0.199 4.199 13 C -0.144 4.144 14 C 0.011 3.989 15 H 0.033 0.967 16 C -0.629 4.629 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.553 5.553 20 Si 0.894 3.106 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.832 3.556 -10.591 15.561 hybrid contribution -1.112 1.166 -0.431 1.668 sum -11.944 4.722 -11.022 16.924 Atomic orbital electron populations 1.21788 0.95996 1.01438 1.01491 1.21678 0.95147 0.96315 1.02959 1.21566 0.88258 0.95686 0.96638 0.94554 1.21662 0.99589 0.95412 0.98208 1.21578 0.96192 0.96884 1.01158 1.21594 0.95553 0.99496 0.98743 1.22150 1.00810 0.88732 0.96200 1.62115 1.07335 1.12482 1.43044 1.22716 0.97176 0.96340 0.86583 0.89599 1.23201 0.98861 0.99715 0.98080 1.22498 0.95802 0.99174 0.96885 1.19387 0.92570 0.97182 0.89751 0.96746 1.22116 1.38871 1.02107 0.99765 0.93388 1.25754 0.96613 1.03184 0.93108 1.70791 1.40748 1.07061 1.36723 0.83604 0.76167 0.74756 0.76113 1.21558 1.21560 1.20921 1.22247 0.92018 1.00508 0.98883 0.92734 0.92801 0.93022 0.91295 0.91290 0.91334 0.91882 0.92284 0.92602 0.91340 0.92050 0.94747 0.90098 0.92307 0.93594 0.92352 0.93560 0.91659 0.93394 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.45 37.16 0.35 -1.21 16 2 C -0.12 -1.58 5.13 -26.73 -0.14 -1.71 16 3 C 0.09 1.17 1.71 -67.72 -0.12 1.06 16 4 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 5 C -0.11 -1.27 5.05 -26.65 -0.13 -1.40 16 6 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 7 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 8 C 0.05 0.73 4.62 -3.84 -0.02 0.71 16 9 N -0.53 -8.25 4.50 -216.80 -0.98 -9.23 16 10 C 0.08 1.46 2.60 -66.05 -0.17 1.29 16 11 H 0.09 1.61 5.75 -51.93 -0.30 1.31 16 12 C -0.16 -3.03 5.53 -24.69 -0.14 -3.17 16 13 C -0.10 -2.44 5.28 -25.03 -0.13 -2.58 16 14 C 0.03 0.75 2.50 -90.66 -0.23 0.52 16 15 H 0.01 0.39 7.99 -51.93 -0.42 -0.02 16 16 C -0.59 -16.62 8.37 -34.44 -0.29 -16.91 16 17 H 0.05 1.35 7.33 -52.49 -0.38 0.97 16 18 C 0.02 0.50 5.32 -17.82 -0.09 0.40 16 19 N -0.92 -27.71 13.42 55.43 0.74 -26.97 16 20 Si 1.06 25.42 29.90 -169.99 -5.08 20.33 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.10 -2.10 5.95 -25.61 -0.15 -2.25 16 25 H 0.05 0.51 6.81 -51.93 -0.35 0.15 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.99 6.01 -51.92 -0.31 0.67 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.06 0.63 6.66 -51.93 -0.35 0.29 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.53 6.21 -51.93 -0.32 0.21 16 37 H 0.08 1.31 5.92 -51.93 -0.31 1.00 16 38 H 0.06 1.09 5.67 -51.93 -0.29 0.79 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.46 7.85 -51.93 -0.41 1.06 16 41 H 0.05 1.12 6.86 -51.93 -0.36 0.76 16 42 H 0.27 8.12 5.45 -40.82 -0.22 7.90 16 43 H 0.05 0.97 5.82 -51.92 -0.30 0.67 16 44 H 0.06 1.29 7.37 -51.93 -0.38 0.91 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -29.12 315.40 -9.85 -38.97 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.70 Total: 0.43 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -1.58 Total: -28.29 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.23 Total: -36.19 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.12 -9.85 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.752 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds