Wall clock time and date at job start Mon Mar 30 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 H 1.09004 * 109.45348 * 57.67218 * 3 2 1 5 5 C 1.53040 * 109.46246 * 297.70652 * 3 2 1 6 6 C 1.53114 * 109.28257 * 180.80368 * 5 3 2 7 7 C 1.53127 * 109.16044 * 57.64868 * 6 5 3 8 8 C 1.53038 * 109.27926 * 302.35084 * 7 6 5 9 9 N 1.46843 * 109.52555 * 59.17656 * 8 7 6 10 10 C 1.46900 * 111.00326 * 174.16226 * 9 8 7 11 11 H 1.08992 * 110.43805 * 175.48878 * 10 9 8 12 12 C 1.54891 * 110.48426 * 52.80291 * 10 9 8 13 13 C 1.54970 * 102.77708 * 203.41044 * 12 10 9 14 14 C 1.54265 * 104.15843 * 37.88419 * 13 12 10 15 15 H 1.08999 * 110.03086 * 95.76102 * 14 13 12 16 16 C 1.50698 * 110.03459 * 217.13717 * 14 13 12 17 17 H 1.08002 * 120.00340 * 117.91083 * 16 14 13 18 18 C 1.37872 * 120.00134 * 297.91337 * 16 14 13 19 19 N 1.31517 * 120.00259 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 120.00250 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46828 * 60.00437 * 20 18 16 22 22 H 1.48493 * 109.47337 * 300.00382 * 20 18 16 23 23 H 1.48501 * 109.47169 * 179.97438 * 20 18 16 24 24 C 1.53872 * 106.64332 * 336.44687 * 14 13 12 25 25 H 1.09002 * 109.46722 * 65.70943 * 1 2 3 26 26 H 1.08999 * 109.47132 * 185.70941 * 1 2 3 27 27 H 1.09000 * 109.47093 * 305.71474 * 1 2 3 28 28 H 1.09002 * 109.47198 * 239.99416 * 2 1 3 29 29 H 1.09007 * 109.46652 * 119.99721 * 2 1 3 30 30 H 1.09008 * 109.49741 * 300.74615 * 5 3 2 31 31 H 1.08995 * 109.50436 * 60.85826 * 5 3 2 32 32 H 1.09001 * 109.52862 * 177.55472 * 6 5 3 33 33 H 1.09000 * 109.52435 * 297.68426 * 6 5 3 34 34 H 1.09004 * 109.50033 * 62.28955 * 7 6 5 35 35 H 1.08995 * 109.50370 * 182.40599 * 7 6 5 36 36 H 1.08998 * 109.45858 * 299.16322 * 8 7 6 37 37 H 1.08997 * 109.45942 * 179.19638 * 8 7 6 38 38 H 1.09003 * 110.75576 * 321.69071 * 12 10 9 39 39 H 1.08996 * 110.75946 * 84.88067 * 12 10 9 40 40 H 1.08998 * 110.46956 * 279.23421 * 13 12 10 41 41 H 1.08994 * 110.52920 * 156.56842 * 13 12 10 42 42 H 0.97000 * 119.99513 * 0.02562 * 19 18 16 43 43 H 1.09011 * 110.03139 * 119.25652 * 24 14 13 44 44 H 1.09000 * 110.03721 * 240.68814 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6429 1.9679 0.8685 5 6 1.5776 2.1468 -1.2775 6 6 2.1070 3.5835 -1.2827 7 6 3.6342 3.5568 -1.1740 8 6 4.0370 2.8115 0.1005 9 7 3.5075 1.4426 0.0568 10 6 3.9901 0.6546 1.1987 11 1 3.5297 -0.3333 1.2012 12 6 3.7008 1.3941 2.5286 13 6 4.7531 0.7901 3.4926 14 6 6.0122 0.6193 2.6178 15 1 6.6724 1.4777 2.7420 16 6 6.7361 -0.6470 2.9964 17 1 6.8555 -1.4383 2.2711 18 6 7.2460 -0.7955 4.2687 19 7 7.1011 0.1681 5.1519 20 14 8.1427 -2.3656 4.7383 21 1 9.3235 -2.5441 3.8556 22 1 7.2275 -3.5243 4.5811 23 1 8.5907 -2.2761 6.1513 24 6 5.5275 0.5336 1.1599 25 1 -0.3633 0.4228 -0.9367 26 1 -0.3633 -1.0226 0.1022 27 1 -0.3633 0.5999 0.8344 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9629 1.6138 -2.1468 31 1 0.4882 2.1603 -1.3116 32 1 1.8165 4.0755 -2.2110 33 1 1.6901 4.1284 -0.4357 34 1 4.0518 3.0460 -2.0416 35 1 4.0141 4.5776 -1.1342 36 1 3.6305 3.3306 0.9685 37 1 5.1240 2.7783 0.1736 38 1 3.8532 2.4674 2.4149 39 1 2.6891 1.1837 2.8754 40 1 4.4158 -0.1759 3.8684 41 1 4.9519 1.4734 4.3182 42 1 6.6351 0.9832 4.9082 43 1 5.9518 1.3510 0.5767 44 1 5.8159 -0.4239 0.7262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260915374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:07 Heat of formation + Delta-G solvation = -41.934474 kcal Electronic energy + Delta-G solvation = -19899.917343 eV Core-core repulsion = 17235.910535 eV Total energy + Delta-G solvation = -2664.006808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10828 -38.34037 -35.09567 -34.94415 -32.91255 -30.16749 -29.90787 -28.23450 -25.90020 -25.20507 -24.50785 -21.84405 -21.65913 -20.79541 -19.75828 -18.89709 -17.60351 -16.36127 -16.02576 -15.77765 -15.64009 -15.16458 -15.15072 -14.57817 -14.41465 -14.11361 -13.97375 -13.77288 -13.43343 -12.80580 -12.73452 -12.59800 -12.47078 -12.33244 -12.08832 -12.02373 -11.93428 -11.91650 -11.61967 -11.50029 -11.48957 -11.33756 -10.99602 -10.84455 -10.48848 -10.42786 -9.12466 -8.55630 -6.28946 1.52267 1.60171 1.79245 2.58500 2.89766 3.21921 3.75279 3.81561 3.85606 3.93983 4.03077 4.15479 4.23311 4.32911 4.38740 4.45221 4.52318 4.59545 4.64819 4.71581 4.75263 4.81499 4.83498 4.86480 4.92716 4.96627 5.04634 5.06992 5.12343 5.16681 5.17736 5.21529 5.28519 5.35536 5.42083 5.43359 5.51691 5.56807 5.67825 6.11904 6.22565 6.24931 6.34927 6.70745 7.51179 8.81728 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.005505 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.303710 B = 5085.419603 C = 5490.797264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.085 3.915 4 H 0.030 0.970 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.046 3.954 9 N -0.527 5.527 10 C 0.093 3.907 11 H 0.084 0.916 12 C -0.144 4.144 13 C -0.096 4.096 14 C 0.022 3.978 15 H -0.015 1.015 16 C -0.605 4.605 17 H 0.043 0.957 18 C -0.033 4.033 19 N -0.941 5.941 20 Si 1.111 2.889 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.285 1.285 24 C -0.091 4.091 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 4.583 -13.048 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.023 4.023 4 H 0.048 0.952 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.082 4.082 9 N -0.250 5.250 10 C -0.015 4.015 11 H 0.102 0.898 12 C -0.183 4.183 13 C -0.135 4.135 14 C 0.003 3.997 15 H 0.003 0.997 16 C -0.643 4.643 17 H 0.062 0.938 18 C -0.230 4.230 19 N -0.579 5.579 20 Si 0.933 3.067 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.210 1.210 24 C -0.129 4.129 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.490 3.617 -12.271 17.879 hybrid contribution -0.582 1.188 0.061 1.324 sum -13.072 4.805 -12.211 18.522 Atomic orbital electron populations 1.21748 0.93909 1.02107 1.02382 1.21663 0.96968 0.95559 1.01843 1.21705 0.86380 0.96444 0.97791 0.95188 1.21655 1.00841 0.95335 0.96552 1.21584 0.94870 0.96741 1.02372 1.21572 0.96812 0.99720 0.96775 1.22200 0.99656 0.88520 0.97798 1.62123 1.09144 1.12734 1.41019 1.22441 0.94886 0.96876 0.87343 0.89787 1.23071 0.98144 0.99922 0.97134 1.22256 0.96447 0.97869 0.96923 1.19403 0.92739 0.94853 0.92695 0.99687 1.22491 1.39005 1.02985 0.99829 0.93824 1.27186 0.97031 1.05463 0.93370 1.70903 1.42088 1.07478 1.37408 0.83009 0.75967 0.71751 0.75947 1.19791 1.19676 1.21048 1.22084 0.94496 1.00113 0.96178 0.91127 0.92174 0.92948 0.91524 0.93295 0.91464 0.89803 0.90099 0.92474 0.91506 0.90623 0.95262 0.91993 0.91543 0.91924 0.94594 0.95328 0.92809 0.92591 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.45 71.98 0.68 -1.92 16 2 C -0.12 -2.91 5.13 30.59 0.16 -2.75 16 3 C 0.08 2.11 1.71 44.94 0.08 2.18 16 4 H 0.03 0.80 7.70 -2.39 -0.02 0.78 16 5 C -0.11 -2.07 5.05 30.65 0.15 -1.91 16 6 C -0.12 -2.17 6.00 30.67 0.18 -1.99 16 7 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 8 C 0.05 1.31 4.62 86.33 0.40 1.71 16 9 N -0.53 -15.88 4.50 -839.82 -3.78 -19.66 16 10 C 0.09 3.39 2.60 45.99 0.12 3.51 16 11 H 0.08 3.13 5.75 -2.39 -0.01 3.12 16 12 C -0.14 -5.44 5.53 31.91 0.18 -5.27 16 13 C -0.10 -4.64 5.28 31.70 0.17 -4.47 16 14 C 0.02 1.14 2.50 -10.82 -0.03 1.12 16 15 H -0.01 -0.86 7.99 -2.39 -0.02 -0.88 16 16 C -0.61 -34.99 8.37 25.60 0.21 -34.77 16 17 H 0.04 2.50 7.33 -2.91 -0.02 2.48 16 18 C -0.03 -1.90 5.32 84.65 0.45 -1.45 16 19 N -0.94 -58.51 13.42 21.45 0.29 -58.23 16 20 Si 1.11 51.38 29.90 68.60 2.05 53.43 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 C -0.09 -3.94 5.95 31.32 0.19 -3.75 16 25 H 0.07 1.06 6.81 -2.39 -0.02 1.04 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.35 6.01 -2.38 -0.01 1.33 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.32 6.66 -2.39 -0.02 1.31 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 0.87 6.21 -2.39 -0.01 0.85 16 37 H 0.06 1.99 5.92 -2.39 -0.01 1.98 16 38 H 0.07 2.43 5.67 -2.39 -0.01 2.42 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.85 7.85 -2.39 -0.02 1.84 16 41 H 0.03 1.44 6.86 -2.39 -0.02 1.42 16 42 H 0.26 16.31 5.45 -92.71 -0.51 15.80 16 43 H 0.06 2.31 5.82 -2.38 -0.01 2.30 16 44 H 0.05 2.07 7.37 -2.39 -0.02 2.05 16 Total: -1.00 -63.95 315.40 2.90 -61.05 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.21 Total: 15.41 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 3.13 Total: -52.00 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.49 Total: -77.89 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -63.95 2.90 -61.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.117 kcal (2) G-P(sol) polarization free energy of solvation -63.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds