Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 H 1.09004 * 109.45624 * 57.55029 * 3 2 1 5 5 C 1.53036 * 109.46533 * 297.57474 * 3 2 1 6 6 C 1.53118 * 109.27948 * 180.80498 * 5 3 2 7 7 C 1.53117 * 109.16034 * 57.65438 * 6 5 3 8 8 C 1.53036 * 109.28065 * 302.34512 * 7 6 5 9 9 N 1.46848 * 109.52135 * 59.18038 * 8 7 6 10 10 C 1.46896 * 110.99729 * 174.16197 * 9 8 7 11 11 H 1.09003 * 110.43370 * 181.92683 * 10 9 8 12 12 C 1.54269 * 110.48641 * 59.38650 * 10 9 8 13 13 C 1.53880 * 106.59398 * 217.70671 * 12 10 9 14 14 C 1.54261 * 106.60277 * 0.02562 * 13 12 10 15 15 H 1.09000 * 110.48472 * 264.79701 * 14 13 12 16 16 C 1.50691 * 110.49165 * 142.28491 * 14 13 12 17 17 H 1.07998 * 120.00336 * 241.45589 * 16 14 13 18 18 C 1.37883 * 120.00154 * 61.44991 * 16 14 13 19 19 N 1.31513 * 119.99503 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00029 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46774 * 90.00530 * 20 18 16 22 22 H 1.48502 * 109.46728 * 210.00129 * 20 18 16 23 23 H 1.48495 * 109.47272 * 329.99963 * 20 18 16 24 24 C 1.54883 * 110.48706 * 304.60708 * 10 9 8 25 25 H 1.08995 * 109.47374 * 65.92303 * 1 2 3 26 26 H 1.08998 * 109.47403 * 185.92816 * 1 2 3 27 27 H 1.09007 * 109.46861 * 305.92572 * 1 2 3 28 28 H 1.09003 * 109.46615 * 240.00364 * 2 1 3 29 29 H 1.08994 * 109.47188 * 120.00323 * 2 1 3 30 30 H 1.09002 * 109.50194 * 60.86333 * 5 3 2 31 31 H 1.09000 * 109.50142 * 300.74903 * 5 3 2 32 32 H 1.09001 * 109.52443 * 297.74644 * 6 5 3 33 33 H 1.08998 * 109.51997 * 177.56159 * 6 5 3 34 34 H 1.09007 * 109.50128 * 182.40208 * 7 6 5 35 35 H 1.09003 * 109.50331 * 62.28983 * 7 6 5 36 36 H 1.08995 * 109.46342 * 179.19567 * 8 7 6 37 37 H 1.09002 * 109.46081 * 299.16218 * 8 7 6 38 38 H 1.08995 * 110.03252 * 336.99498 * 12 10 9 39 39 H 1.09000 * 110.03219 * 98.37884 * 12 10 9 40 40 H 1.09005 * 110.02632 * 119.28487 * 13 12 10 41 41 H 1.08998 * 110.03664 * 240.66351 * 13 12 10 42 42 H 0.97003 * 119.99502 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.75957 * 274.93814 * 24 10 9 44 44 H 1.09003 * 110.75759 * 38.30968 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6411 1.9686 0.8673 5 6 1.5803 2.1459 -1.2790 6 6 2.1098 3.5826 -1.2840 7 6 3.6366 3.5559 -1.1721 8 6 4.0368 2.8116 0.1038 9 7 3.5073 1.4426 0.0599 10 6 3.9877 0.6555 1.2034 11 1 3.6170 -0.3678 1.1435 12 6 3.5526 1.3106 2.5306 13 6 4.7210 1.1270 3.5150 14 6 5.8254 0.3674 2.7515 15 1 5.7552 -0.7031 2.9443 16 6 7.1865 0.8839 3.1407 17 1 7.8278 1.3311 2.3956 18 6 7.6133 0.7856 4.4481 19 7 6.8325 0.2407 5.3554 20 14 9.3002 1.4265 4.9307 21 1 9.1915 2.8514 5.3343 22 1 9.8261 0.6287 6.0674 23 1 10.2240 1.3087 3.7740 24 6 5.5353 0.6720 1.2609 25 1 -0.3634 0.4192 -0.9382 26 1 -0.3634 -1.0221 0.1061 27 1 -0.3633 0.6030 0.8322 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.4910 2.1594 -1.3154 31 1 1.9674 1.6123 -2.1470 32 1 1.6919 4.1278 -0.4377 33 1 1.8211 4.0739 -2.2132 34 1 4.0164 4.5769 -1.1322 35 1 4.0561 3.0446 -2.0385 36 1 5.1236 2.7784 0.1792 37 1 3.6285 3.3314 0.9706 38 1 3.3572 2.3718 2.3767 39 1 2.6591 0.8185 2.9146 40 1 5.0926 2.0993 3.8388 41 1 4.3948 0.5461 4.3776 42 1 7.1329 0.1713 6.2751 43 1 5.9541 -0.1034 0.6195 44 1 5.9218 1.6532 0.9853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260915377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = -24.034264 kcal Electronic energy + Delta-G solvation = -19868.567477 eV Core-core repulsion = 17205.336880 eV Total energy + Delta-G solvation = -2663.230597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72940 -36.50377 -33.90420 -33.05686 -31.36752 -29.09982 -28.03568 -26.78185 -24.28463 -24.06848 -22.86914 -20.71406 -20.15298 -18.95034 -18.22356 -16.52658 -15.54259 -14.93080 -14.85802 -14.47236 -14.42287 -14.09202 -13.44960 -13.20556 -13.08817 -12.73811 -12.36793 -12.23163 -11.67972 -11.60337 -11.39846 -11.08231 -11.00406 -10.93773 -10.75094 -10.68080 -10.47440 -10.39282 -10.22430 -10.13384 -9.76877 -9.50822 -9.44237 -9.01076 -8.64528 -8.33143 -7.73091 -5.96215 -3.98535 3.32844 3.39662 3.43043 4.23270 4.48342 4.87697 4.90117 5.03987 5.20018 5.30189 5.36134 5.43738 5.48401 5.55213 5.66206 5.71929 5.78094 5.81542 5.85644 5.93030 6.04210 6.06871 6.07984 6.09635 6.19924 6.25358 6.36023 6.38180 6.47733 6.51011 6.63288 6.68941 6.85059 6.91131 7.08552 7.28863 7.41154 7.62995 7.67792 7.77590 7.96798 8.08382 8.52558 9.04637 9.65220 11.13462 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.005570 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.154676 B = 5026.141735 C = 5566.989506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.086 3.914 4 H 0.037 0.963 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.047 3.953 9 N -0.526 5.526 10 C 0.076 3.924 11 H 0.081 0.919 12 C -0.157 4.157 13 C -0.090 4.090 14 C 0.048 3.952 15 H 0.027 0.973 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.258 0.742 43 H 0.048 0.952 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 3.497 -11.283 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.023 4.023 4 H 0.055 0.945 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.081 4.081 9 N -0.249 5.249 10 C -0.032 4.032 11 H 0.099 0.901 12 C -0.197 4.197 13 C -0.129 4.129 14 C 0.030 3.970 15 H 0.045 0.955 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.166 3.230 -11.527 16.370 hybrid contribution 0.550 0.775 1.278 1.593 sum -10.616 4.005 -10.249 15.290 Atomic orbital electron populations 1.21790 0.96094 1.01360 1.01491 1.21643 0.95065 0.96406 1.02819 1.21573 0.88494 0.95601 0.96606 0.94474 1.21657 0.99509 0.95456 0.98218 1.21580 0.96327 0.96854 1.01076 1.21594 0.95429 0.99538 0.98808 1.22192 1.01214 0.88616 0.96057 1.62164 1.07239 1.12677 1.42821 1.22739 0.97171 0.96427 0.86850 0.90065 1.22900 0.99532 0.99336 0.97891 1.21978 0.93618 1.00615 0.96661 1.19430 0.93727 0.95727 0.88158 0.95535 1.21164 1.00718 1.39188 0.93853 0.92734 1.24981 0.96969 0.95276 0.96771 1.69982 1.36319 1.44495 1.02126 0.86669 0.84853 0.78795 0.78131 1.20821 1.21330 1.19930 1.22732 0.91527 1.00640 0.99749 0.92774 0.92880 0.93009 0.91405 0.91370 0.91992 0.91401 0.92619 0.92381 0.92082 0.91410 0.89563 0.94759 0.93174 0.93937 0.93357 0.92927 0.93201 0.93282 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.45 37.16 0.35 -1.21 16 2 C -0.12 -1.54 5.11 -26.73 -0.14 -1.68 16 3 C 0.09 1.17 1.63 -67.72 -0.11 1.06 16 4 H 0.04 0.55 7.41 -51.93 -0.38 0.17 16 5 C -0.11 -1.28 5.05 -26.65 -0.13 -1.42 16 6 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 7 C -0.12 -1.45 6.09 -26.65 -0.16 -1.61 16 8 C 0.05 0.72 4.80 -3.83 -0.02 0.70 16 9 N -0.53 -8.30 4.55 -216.79 -0.99 -9.29 16 10 C 0.08 1.38 2.51 -66.06 -0.17 1.21 16 11 H 0.08 1.47 6.09 -51.93 -0.32 1.15 16 12 C -0.16 -3.04 5.26 -25.61 -0.13 -3.17 16 13 C -0.09 -2.14 5.40 -25.61 -0.14 -2.27 16 14 C 0.05 1.21 2.79 -90.13 -0.25 0.96 16 15 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.51 -14.12 8.40 -34.44 -0.29 -14.41 16 17 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 19 N -0.89 -25.89 12.35 55.43 0.68 -25.20 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.11 -2.28 5.71 -24.75 -0.14 -2.42 16 25 H 0.05 0.51 6.82 -51.93 -0.35 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.95 6.13 -51.93 -0.32 0.64 16 30 H 0.06 0.63 6.67 -51.93 -0.35 0.29 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.45 5.62 -51.93 -0.29 1.16 16 37 H 0.03 0.56 6.18 -51.93 -0.32 0.24 16 38 H 0.05 0.94 5.65 -51.93 -0.29 0.65 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.23 7.83 -51.93 -0.41 0.82 16 41 H 0.05 1.33 7.94 -51.93 -0.41 0.92 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.32 5.45 -51.93 -0.28 1.04 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -27.91 318.74 -10.03 -37.94 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.92 Total: -0.56 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.59 Total: -24.16 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.30 Total: -34.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.91 -10.03 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.905 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds