Wall clock time and date at job start Mon Mar 30 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 H 1.09004 * 109.45624 * 57.55029 * 3 2 1 5 5 C 1.53036 * 109.46533 * 297.57474 * 3 2 1 6 6 C 1.53118 * 109.27948 * 180.80498 * 5 3 2 7 7 C 1.53117 * 109.16034 * 57.65438 * 6 5 3 8 8 C 1.53036 * 109.28065 * 302.34512 * 7 6 5 9 9 N 1.46848 * 109.52135 * 59.18038 * 8 7 6 10 10 C 1.46896 * 110.99729 * 174.16197 * 9 8 7 11 11 H 1.09003 * 110.43370 * 181.92683 * 10 9 8 12 12 C 1.54269 * 110.48641 * 59.38650 * 10 9 8 13 13 C 1.53880 * 106.59398 * 217.70671 * 12 10 9 14 14 C 1.54261 * 106.60277 * 0.02562 * 13 12 10 15 15 H 1.09000 * 110.48472 * 264.79701 * 14 13 12 16 16 C 1.50691 * 110.49165 * 142.28491 * 14 13 12 17 17 H 1.07998 * 120.00336 * 241.45589 * 16 14 13 18 18 C 1.37883 * 120.00154 * 61.44991 * 16 14 13 19 19 N 1.31513 * 119.99503 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00029 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46774 * 90.00530 * 20 18 16 22 22 H 1.48502 * 109.46728 * 210.00129 * 20 18 16 23 23 H 1.48495 * 109.47272 * 329.99963 * 20 18 16 24 24 C 1.54883 * 110.48706 * 304.60708 * 10 9 8 25 25 H 1.08995 * 109.47374 * 65.92303 * 1 2 3 26 26 H 1.08998 * 109.47403 * 185.92816 * 1 2 3 27 27 H 1.09007 * 109.46861 * 305.92572 * 1 2 3 28 28 H 1.09003 * 109.46615 * 240.00364 * 2 1 3 29 29 H 1.08994 * 109.47188 * 120.00323 * 2 1 3 30 30 H 1.09002 * 109.50194 * 60.86333 * 5 3 2 31 31 H 1.09000 * 109.50142 * 300.74903 * 5 3 2 32 32 H 1.09001 * 109.52443 * 297.74644 * 6 5 3 33 33 H 1.08998 * 109.51997 * 177.56159 * 6 5 3 34 34 H 1.09007 * 109.50128 * 182.40208 * 7 6 5 35 35 H 1.09003 * 109.50331 * 62.28983 * 7 6 5 36 36 H 1.08995 * 109.46342 * 179.19567 * 8 7 6 37 37 H 1.09002 * 109.46081 * 299.16218 * 8 7 6 38 38 H 1.08995 * 110.03252 * 336.99498 * 12 10 9 39 39 H 1.09000 * 110.03219 * 98.37884 * 12 10 9 40 40 H 1.09005 * 110.02632 * 119.28487 * 13 12 10 41 41 H 1.08998 * 110.03664 * 240.66351 * 13 12 10 42 42 H 0.97003 * 119.99502 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.75957 * 274.93814 * 24 10 9 44 44 H 1.09003 * 110.75759 * 38.30968 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6411 1.9686 0.8673 5 6 1.5803 2.1459 -1.2790 6 6 2.1098 3.5826 -1.2840 7 6 3.6366 3.5559 -1.1721 8 6 4.0368 2.8116 0.1038 9 7 3.5073 1.4426 0.0599 10 6 3.9877 0.6555 1.2034 11 1 3.6170 -0.3678 1.1435 12 6 3.5526 1.3106 2.5306 13 6 4.7210 1.1270 3.5150 14 6 5.8254 0.3674 2.7515 15 1 5.7552 -0.7031 2.9443 16 6 7.1865 0.8839 3.1407 17 1 7.8278 1.3311 2.3956 18 6 7.6133 0.7856 4.4481 19 7 6.8325 0.2407 5.3554 20 14 9.3002 1.4265 4.9307 21 1 9.1915 2.8514 5.3343 22 1 9.8261 0.6287 6.0674 23 1 10.2240 1.3087 3.7740 24 6 5.5353 0.6720 1.2609 25 1 -0.3634 0.4192 -0.9382 26 1 -0.3634 -1.0221 0.1061 27 1 -0.3633 0.6030 0.8322 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.4910 2.1594 -1.3154 31 1 1.9674 1.6123 -2.1470 32 1 1.6919 4.1278 -0.4377 33 1 1.8211 4.0739 -2.2132 34 1 4.0164 4.5769 -1.1322 35 1 4.0561 3.0446 -2.0385 36 1 5.1236 2.7784 0.1792 37 1 3.6285 3.3314 0.9706 38 1 3.3572 2.3718 2.3767 39 1 2.6591 0.8185 2.9146 40 1 5.0926 2.0993 3.8388 41 1 4.3948 0.5461 4.3776 42 1 7.1329 0.1713 6.2751 43 1 5.9541 -0.1034 0.6195 44 1 5.9218 1.6532 0.9853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260915377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:12 Heat of formation + Delta-G solvation = -38.684452 kcal Electronic energy + Delta-G solvation = -19869.202757 eV Core-core repulsion = 17205.336880 eV Total energy + Delta-G solvation = -2663.865877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02981 -38.05982 -34.90123 -34.84491 -33.00304 -30.16029 -29.80676 -28.47053 -25.94884 -25.15417 -24.32855 -21.81913 -21.38645 -20.79557 -19.61376 -18.39281 -17.08605 -16.58995 -16.27763 -16.01907 -15.65133 -15.22104 -14.70506 -14.63910 -14.23007 -13.97033 -13.94389 -13.61875 -13.26828 -13.02927 -12.76081 -12.59328 -12.46296 -12.36135 -12.28326 -12.01785 -11.87185 -11.79061 -11.58097 -11.39906 -11.37771 -11.11556 -10.82889 -10.80620 -10.67854 -10.47517 -9.06196 -8.12367 -6.22093 1.39801 1.40279 1.50942 2.42726 2.99434 3.18594 3.83677 3.88839 3.96798 4.03623 4.12229 4.24641 4.28696 4.37579 4.46833 4.50348 4.58997 4.70883 4.73504 4.82374 4.87826 4.91365 4.95172 5.00027 5.06894 5.09778 5.12192 5.17364 5.21194 5.21523 5.26213 5.35094 5.41125 5.42773 5.46454 5.54193 5.57806 5.65792 5.91614 5.98170 6.26587 6.39297 6.42816 6.89278 7.45372 8.96758 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.005570 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.154676 B = 5026.141735 C = 5566.989506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.027 0.973 5 C -0.106 4.106 6 C -0.119 4.119 7 C -0.111 4.111 8 C 0.045 3.955 9 N -0.524 5.524 10 C 0.090 3.910 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.079 4.079 14 C 0.040 3.960 15 H -0.004 1.004 16 C -0.530 4.530 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.267 1.267 24 C -0.099 4.099 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.023 0.977 41 H 0.026 0.974 42 H 0.259 0.741 43 H 0.050 0.950 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 4.452 -13.042 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.025 4.025 4 H 0.045 0.955 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.083 4.083 9 N -0.247 5.247 10 C -0.019 4.019 11 H 0.103 0.897 12 C -0.183 4.183 13 C -0.117 4.117 14 C 0.021 3.979 15 H 0.014 0.986 16 C -0.568 4.568 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.137 4.137 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.179 4.191 -13.306 18.518 hybrid contribution 0.867 0.459 1.833 2.079 sum -11.312 4.649 -11.473 16.769 Atomic orbital electron populations 1.21751 0.94114 1.02066 1.02274 1.21630 0.96795 0.95467 1.01944 1.21712 0.86638 0.96527 0.97604 0.95461 1.21649 1.00748 0.95283 0.96662 1.21587 0.94997 0.96834 1.02207 1.21567 0.96704 0.99684 0.96883 1.22219 1.00024 0.88587 0.97463 1.62188 1.09011 1.12709 1.40841 1.22491 0.95045 0.97131 0.87227 0.89704 1.22749 0.97972 1.00193 0.97343 1.21741 0.94932 0.98364 0.96701 1.19416 0.93421 0.93816 0.91258 0.98597 1.21526 1.01908 1.39222 0.94159 0.92925 1.25777 1.00733 0.95489 0.96773 1.70112 1.38080 1.45504 1.02369 0.85636 0.80355 0.78275 0.77904 1.20181 1.20937 1.19109 1.22561 0.93896 1.00498 0.96747 0.91215 0.92112 0.93139 0.91338 0.93189 0.89953 0.91311 0.92737 0.90141 0.90839 0.91328 0.91461 0.95836 0.92414 0.92730 0.95848 0.95499 0.93187 0.93109 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.45 71.98 0.68 -1.94 16 2 C -0.12 -2.83 5.11 30.59 0.16 -2.67 16 3 C 0.08 2.10 1.63 44.94 0.07 2.18 16 4 H 0.03 0.76 7.41 -2.38 -0.02 0.74 16 5 C -0.11 -2.11 5.05 30.65 0.15 -1.95 16 6 C -0.12 -2.29 6.00 30.67 0.18 -2.11 16 7 C -0.11 -2.51 6.09 30.65 0.19 -2.33 16 8 C 0.04 1.33 4.80 86.33 0.41 1.75 16 9 N -0.52 -15.93 4.55 -839.80 -3.82 -19.75 16 10 C 0.09 3.24 2.51 45.99 0.12 3.35 16 11 H 0.08 3.04 6.09 -2.39 -0.01 3.03 16 12 C -0.14 -5.57 5.26 31.32 0.16 -5.40 16 13 C -0.08 -3.88 5.40 31.32 0.17 -3.71 16 14 C 0.04 2.07 2.79 -10.47 -0.03 2.04 16 15 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 16 C -0.53 -30.07 8.40 25.60 0.22 -29.86 16 17 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 18 C 0.01 0.61 5.33 84.66 0.45 1.06 16 19 N -0.92 -55.09 12.35 21.45 0.26 -54.82 16 20 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.10 -4.23 5.71 31.88 0.18 -4.04 16 25 H 0.07 1.05 6.82 -2.39 -0.02 1.04 16 26 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.34 6.13 -2.39 -0.01 1.33 16 30 H 0.08 1.34 6.67 -2.39 -0.02 1.33 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.24 5.62 -2.39 -0.01 2.23 16 37 H 0.02 0.75 6.18 -2.39 -0.01 0.73 16 38 H 0.06 2.16 5.65 -2.39 -0.01 2.15 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 40 H 0.02 1.22 7.83 -2.38 -0.02 1.20 16 41 H 0.03 1.41 7.94 -2.39 -0.02 1.39 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 2.64 5.45 -2.39 -0.01 2.63 16 Total: -1.00 -61.03 318.74 2.53 -58.50 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.94 Total: 13.06 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 3.12 Total: -43.63 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -3.55 Total: -74.57 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.03 2.53 -58.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.816 kcal (2) G-P(sol) polarization free energy of solvation -61.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds