Wall clock time and date at job start Mon Mar 30 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 H 1.09000 * 110.36318 * 304.55272 * 3 2 1 5 5 C 1.54373 * 110.51528 * 182.13026 * 3 2 1 6 6 C 1.54259 * 105.06464 * 217.31708 * 5 3 2 7 7 C 1.54384 * 105.05626 * 0.02562 * 6 5 3 8 8 N 1.48551 * 104.59581 * 23.85360 * 7 6 5 9 9 C 1.46904 * 111.00265 * 200.95965 * 8 7 6 10 10 H 1.08996 * 109.47358 * 164.78897 * 9 8 7 11 11 C 1.53003 * 109.46810 * 44.78603 * 9 8 7 12 12 C 1.53000 * 109.46832 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 60.00230 * 12 11 9 14 14 C 1.52994 * 109.47238 * 300.00197 * 13 12 11 15 15 C 1.52998 * 109.46631 * 284.79103 * 9 8 7 16 16 H 1.08996 * 109.47418 * 59.99830 * 15 9 8 17 17 C 1.50699 * 109.47441 * 299.99380 * 15 9 8 18 18 H 1.08005 * 119.99569 * 0.02562 * 17 15 9 19 19 C 1.37872 * 120.00299 * 180.02562 * 17 15 9 20 20 N 1.31519 * 120.00036 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00295 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46997 * 269.99929 * 21 19 17 23 23 H 1.48501 * 109.46964 * 29.99401 * 21 19 17 24 24 H 1.48491 * 109.47524 * 149.99889 * 21 19 17 25 25 H 1.08995 * 109.47195 * 43.67141 * 1 2 3 26 26 H 1.09007 * 109.47093 * 163.66570 * 1 2 3 27 27 H 1.08994 * 109.47365 * 283.66418 * 1 2 3 28 28 H 1.09001 * 109.47192 * 239.99680 * 2 1 3 29 29 H 1.09002 * 109.47265 * 119.99995 * 2 1 3 30 30 H 1.08998 * 110.32412 * 336.21893 * 5 3 2 31 31 H 1.09001 * 110.31966 * 98.42092 * 5 3 2 32 32 H 1.09000 * 110.32230 * 118.89484 * 6 5 3 33 33 H 1.09000 * 110.32527 * 241.00644 * 6 5 3 34 34 H 1.08998 * 110.41072 * 265.06966 * 7 6 5 35 35 H 1.09003 * 110.40959 * 142.62858 * 7 6 5 36 36 H 1.08996 * 109.47400 * 300.00269 * 11 9 8 37 37 H 1.08996 * 109.46876 * 60.00515 * 11 9 8 38 38 H 1.09001 * 109.46762 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.47428 * 299.99986 * 12 11 9 40 40 H 1.09003 * 109.47096 * 59.99553 * 13 12 11 41 41 H 1.08998 * 109.47533 * 179.97438 * 13 12 11 42 42 H 1.09006 * 109.46981 * 299.99451 * 14 13 12 43 43 H 1.09001 * 109.47497 * 180.02562 * 14 13 12 44 44 H 0.96999 * 120.00175 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6200 1.9933 -0.8416 5 6 3.5825 1.4709 -0.0537 6 6 3.9935 2.6514 0.8501 7 6 2.6646 3.2366 1.3745 8 7 1.6980 2.1125 1.2814 9 6 0.3150 2.6074 1.2636 10 1 -0.3511 1.8126 0.9281 11 6 0.2114 3.7972 0.3072 12 6 -1.2288 4.3131 0.2891 13 6 -1.6301 4.7549 1.6979 14 6 -1.5265 3.5652 2.6543 15 6 -0.0868 3.0490 2.6723 16 1 0.5793 3.8439 3.0077 17 6 0.0152 1.8772 3.6143 18 1 0.3350 0.9139 3.2452 19 6 -0.2998 2.0348 4.9473 20 7 -0.6887 3.2080 5.3969 21 14 -0.1727 0.5825 6.1152 22 1 -1.4699 -0.1396 6.1501 23 1 0.8937 -0.3382 5.6459 24 1 0.1589 1.0705 7.4779 25 1 -0.3633 0.7433 -0.7096 26 1 -0.3634 -0.9862 -0.2890 27 1 -0.3634 0.2427 0.9985 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9921 0.5376 0.3328 31 1 3.9226 1.6400 -1.0754 32 1 4.6048 2.2976 1.6804 33 1 4.5369 3.3992 0.2725 34 1 2.3421 4.0683 0.7481 35 1 2.7737 3.5594 2.4099 36 1 0.8775 4.5921 0.6426 37 1 0.4977 3.4826 -0.6964 38 1 -1.3027 5.1605 -0.3926 39 1 -1.8953 3.5184 -0.0462 40 1 -0.9636 5.5496 2.0331 41 1 -2.6560 5.1228 1.6849 42 1 -2.1930 2.7704 2.3191 43 1 -1.8128 3.8798 3.6579 44 1 -0.9106 3.3188 6.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260925059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:00 Heat of formation + Delta-G solvation = -10.890128 kcal Electronic energy + Delta-G solvation = -20599.206949 eV Core-core repulsion = 17936.546324 eV Total energy + Delta-G solvation = -2662.660624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57083 -36.53722 -32.92871 -32.71327 -31.56913 -29.36016 -27.50084 -27.25964 -24.48332 -23.23790 -21.53500 -20.73331 -20.40869 -19.26203 -18.07775 -16.21423 -15.86555 -14.86344 -14.53132 -14.40453 -13.67108 -13.27228 -13.19020 -12.90369 -12.72184 -12.53780 -12.28063 -11.97890 -11.71477 -11.55983 -11.16084 -10.85867 -10.79022 -10.73756 -10.56324 -10.55109 -10.42249 -10.17989 -10.11322 -9.90432 -9.74833 -9.59330 -9.30783 -8.82254 -8.48518 -8.13468 -7.40156 -5.79862 -3.80740 3.40986 3.47840 3.53023 4.59529 4.67466 5.03072 5.15316 5.35851 5.45160 5.51075 5.57023 5.61400 5.63826 5.74308 5.81229 5.87856 5.97981 6.06848 6.14344 6.15139 6.25198 6.30298 6.35170 6.37453 6.42026 6.47072 6.49410 6.55464 6.65506 6.70047 6.75024 6.78396 6.86944 6.98085 7.16080 7.27402 7.48172 7.75514 7.88199 7.98575 8.18992 8.34338 8.69627 9.23513 9.81013 11.26516 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.009733 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.612909 B = 2876.152476 C = 3546.314748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C 0.053 3.947 4 H 0.043 0.957 5 C -0.118 4.118 6 C -0.124 4.124 7 C 0.026 3.974 8 N -0.471 5.471 9 C 0.066 3.934 10 H 0.090 0.910 11 C -0.153 4.153 12 C -0.108 4.108 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.065 3.935 16 H 0.022 0.978 17 C -0.477 4.477 18 H 0.061 0.939 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.291 1.291 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.093 0.907 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -0.752 -11.228 11.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.056 4.056 4 H 0.061 0.939 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.102 4.102 8 N -0.193 5.193 9 C -0.042 4.042 10 H 0.108 0.892 11 C -0.192 4.192 12 C -0.146 4.146 13 C -0.157 4.157 14 C -0.150 4.150 15 C 0.046 3.954 16 H 0.040 0.960 17 C -0.515 4.515 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.541 5.541 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.200 1.200 24 H -0.217 1.217 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.111 0.889 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.002 -1.055 -10.591 11.371 hybrid contribution -0.052 -0.074 -0.012 0.091 sum 3.950 -1.128 -10.603 11.371 Atomic orbital electron populations 1.22032 0.96155 1.00129 1.03256 1.21387 0.95990 0.95544 1.01149 1.22738 0.94247 0.95643 0.92933 0.93881 1.22298 0.95556 0.99046 0.98711 1.22278 0.97792 0.97140 0.98960 1.23190 0.91475 0.93877 1.01623 1.65611 1.02847 1.22001 1.28859 1.22479 0.89114 0.94576 0.98051 0.89228 1.22298 0.97134 1.00648 0.99127 1.21422 0.96354 0.99225 0.97620 1.21639 0.98967 1.00031 0.95100 1.21642 0.99464 0.94120 0.99796 1.18575 0.92058 0.96038 0.88679 0.96019 1.21144 1.41787 0.96276 0.92341 0.92101 1.24944 0.96070 0.95269 0.98241 1.69879 1.47474 1.22262 1.14474 0.86712 0.78094 0.83384 0.80471 1.21184 1.20010 1.21733 0.93479 0.93812 0.90040 0.93005 0.91133 0.91437 0.92499 0.91521 0.92465 0.93689 0.90010 0.91965 0.93901 0.93920 0.92902 0.93184 0.94089 0.94967 0.88859 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.31 37.16 0.31 -2.16 16 2 C -0.10 -1.55 5.54 -26.73 -0.15 -1.70 16 3 C 0.05 0.84 2.33 -66.06 -0.15 0.69 16 4 H 0.04 0.68 6.23 -51.93 -0.32 0.36 16 5 C -0.12 -1.64 6.55 -25.35 -0.17 -1.81 16 6 C -0.12 -1.80 7.00 -25.35 -0.18 -1.97 16 7 C 0.03 0.46 5.60 -2.18 -0.01 0.45 16 8 N -0.47 -8.95 4.52 -214.22 -0.97 -9.92 16 9 C 0.07 1.31 1.31 -67.71 -0.09 1.22 16 10 H 0.09 1.82 3.76 -51.93 -0.20 1.62 16 11 C -0.15 -2.70 4.27 -26.73 -0.11 -2.82 16 12 C -0.11 -1.85 5.92 -26.73 -0.16 -2.01 16 13 C -0.12 -2.32 5.92 -26.74 -0.16 -2.48 16 14 C -0.11 -2.60 4.98 -26.76 -0.13 -2.73 16 15 C 0.07 1.57 1.61 -91.79 -0.15 1.42 16 16 H 0.02 0.59 7.50 -51.93 -0.39 0.20 16 17 C -0.48 -12.82 8.19 -34.44 -0.28 -13.10 16 18 H 0.06 1.67 7.67 -52.48 -0.40 1.26 16 19 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 20 N -0.90 -25.82 11.32 55.43 0.63 -25.19 16 21 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.05 0.70 7.62 -51.93 -0.40 0.31 16 26 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.08 1.51 6.34 -51.93 -0.33 1.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.77 5.14 -51.93 -0.27 0.50 16 35 H 0.08 1.62 7.86 -51.93 -0.41 1.21 16 36 H 0.06 1.13 5.92 -51.93 -0.31 0.82 16 37 H 0.04 0.70 6.50 -51.93 -0.34 0.36 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -27.58 315.88 -9.99 -37.58 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.86 Total: 1.62 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.53 Total: -25.61 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.34 Total: -35.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.58 -9.99 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.685 kcal (2) G-P(sol) polarization free energy of solvation -27.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds