Wall clock time and date at job start Mon Mar 30 2020 06:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 H 1.09000 * 110.36318 * 304.55272 * 3 2 1 5 5 C 1.54373 * 110.51528 * 182.13026 * 3 2 1 6 6 C 1.54259 * 105.06464 * 217.31708 * 5 3 2 7 7 C 1.54384 * 105.05626 * 0.02562 * 6 5 3 8 8 N 1.48551 * 104.59581 * 23.85360 * 7 6 5 9 9 C 1.46904 * 111.00265 * 200.95965 * 8 7 6 10 10 H 1.08996 * 109.47358 * 164.78897 * 9 8 7 11 11 C 1.53003 * 109.46810 * 44.78603 * 9 8 7 12 12 C 1.53000 * 109.46832 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47267 * 60.00230 * 12 11 9 14 14 C 1.52994 * 109.47238 * 300.00197 * 13 12 11 15 15 C 1.52998 * 109.46631 * 284.79103 * 9 8 7 16 16 H 1.08996 * 109.47418 * 59.99830 * 15 9 8 17 17 C 1.50699 * 109.47441 * 299.99380 * 15 9 8 18 18 H 1.08005 * 119.99569 * 0.02562 * 17 15 9 19 19 C 1.37872 * 120.00299 * 180.02562 * 17 15 9 20 20 N 1.31519 * 120.00036 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00295 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46997 * 269.99929 * 21 19 17 23 23 H 1.48501 * 109.46964 * 29.99401 * 21 19 17 24 24 H 1.48491 * 109.47524 * 149.99889 * 21 19 17 25 25 H 1.08995 * 109.47195 * 43.67141 * 1 2 3 26 26 H 1.09007 * 109.47093 * 163.66570 * 1 2 3 27 27 H 1.08994 * 109.47365 * 283.66418 * 1 2 3 28 28 H 1.09001 * 109.47192 * 239.99680 * 2 1 3 29 29 H 1.09002 * 109.47265 * 119.99995 * 2 1 3 30 30 H 1.08998 * 110.32412 * 336.21893 * 5 3 2 31 31 H 1.09001 * 110.31966 * 98.42092 * 5 3 2 32 32 H 1.09000 * 110.32230 * 118.89484 * 6 5 3 33 33 H 1.09000 * 110.32527 * 241.00644 * 6 5 3 34 34 H 1.08998 * 110.41072 * 265.06966 * 7 6 5 35 35 H 1.09003 * 110.40959 * 142.62858 * 7 6 5 36 36 H 1.08996 * 109.47400 * 300.00269 * 11 9 8 37 37 H 1.08996 * 109.46876 * 60.00515 * 11 9 8 38 38 H 1.09001 * 109.46762 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.47428 * 299.99986 * 12 11 9 40 40 H 1.09003 * 109.47096 * 59.99553 * 13 12 11 41 41 H 1.08998 * 109.47533 * 179.97438 * 13 12 11 42 42 H 1.09006 * 109.46981 * 299.99451 * 14 13 12 43 43 H 1.09001 * 109.47497 * 180.02562 * 14 13 12 44 44 H 0.96999 * 120.00175 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6200 1.9933 -0.8416 5 6 3.5825 1.4709 -0.0537 6 6 3.9935 2.6514 0.8501 7 6 2.6646 3.2366 1.3745 8 7 1.6980 2.1125 1.2814 9 6 0.3150 2.6074 1.2636 10 1 -0.3511 1.8126 0.9281 11 6 0.2114 3.7972 0.3072 12 6 -1.2288 4.3131 0.2891 13 6 -1.6301 4.7549 1.6979 14 6 -1.5265 3.5652 2.6543 15 6 -0.0868 3.0490 2.6723 16 1 0.5793 3.8439 3.0077 17 6 0.0152 1.8772 3.6143 18 1 0.3350 0.9139 3.2452 19 6 -0.2998 2.0348 4.9473 20 7 -0.6887 3.2080 5.3969 21 14 -0.1727 0.5825 6.1152 22 1 -1.4699 -0.1396 6.1501 23 1 0.8937 -0.3382 5.6459 24 1 0.1589 1.0705 7.4779 25 1 -0.3633 0.7433 -0.7096 26 1 -0.3634 -0.9862 -0.2890 27 1 -0.3634 0.2427 0.9985 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9921 0.5376 0.3328 31 1 3.9226 1.6400 -1.0754 32 1 4.6048 2.2976 1.6804 33 1 4.5369 3.3992 0.2725 34 1 2.3421 4.0683 0.7481 35 1 2.7737 3.5594 2.4099 36 1 0.8775 4.5921 0.6426 37 1 0.4977 3.4826 -0.6964 38 1 -1.3027 5.1605 -0.3926 39 1 -1.8953 3.5184 -0.0462 40 1 -0.9636 5.5496 2.0331 41 1 -2.6560 5.1228 1.6849 42 1 -2.1930 2.7704 2.3191 43 1 -1.8128 3.8798 3.6579 44 1 -0.9106 3.3188 6.3346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260925059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:58 Heat of formation + Delta-G solvation = -25.508840 kcal Electronic energy + Delta-G solvation = -20599.840864 eV Core-core repulsion = 17936.546324 eV Total energy + Delta-G solvation = -2663.294539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 4.81 seconds Orbital eigenvalues (eV) -41.00494 -38.05657 -34.72984 -34.15633 -32.99436 -31.19393 -28.92746 -28.62084 -26.43533 -24.60775 -23.08936 -22.22647 -21.79191 -20.63594 -19.68592 -18.24286 -17.26612 -16.48812 -16.15929 -15.82497 -15.26123 -14.75732 -14.71713 -14.25505 -14.22888 -13.94148 -13.77885 -13.62567 -13.15207 -13.04899 -12.84393 -12.60467 -12.48477 -12.13879 -12.04982 -11.99299 -11.87568 -11.76088 -11.66053 -11.37960 -11.32086 -11.08863 -10.93856 -10.64895 -10.36541 -10.17879 -8.83798 -7.93833 -6.00863 1.40767 1.42489 1.52468 2.51480 3.27173 3.40214 3.80863 3.91942 4.05155 4.16285 4.17354 4.30068 4.36342 4.43860 4.55345 4.56797 4.64815 4.71463 4.77448 4.87558 4.89510 4.92885 4.99556 5.04504 5.08930 5.12078 5.19158 5.20673 5.25005 5.30526 5.34141 5.42723 5.44678 5.49152 5.55886 5.58877 5.68381 5.83826 6.09921 6.19656 6.39950 6.57662 6.70474 7.10072 7.63344 9.10187 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.009733 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.612909 B = 2876.152476 C = 3546.314748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C 0.052 3.948 4 H 0.053 0.947 5 C -0.112 4.112 6 C -0.118 4.118 7 C 0.025 3.975 8 N -0.500 5.500 9 C 0.074 3.926 10 H 0.089 0.911 11 C -0.147 4.147 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.108 4.108 15 C 0.068 3.932 16 H -0.017 1.017 17 C -0.481 4.481 18 H 0.051 0.949 19 C 0.004 3.996 20 N -0.926 5.926 21 Si 0.940 3.060 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.291 1.291 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 -1.392 -13.986 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.056 4.056 4 H 0.070 0.930 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.103 4.103 8 N -0.223 5.223 9 C -0.034 4.034 10 H 0.106 0.894 11 C -0.185 4.185 12 C -0.141 4.141 13 C -0.151 4.151 14 C -0.146 4.146 15 C 0.049 3.951 16 H 0.001 0.999 17 C -0.520 4.520 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.767 3.233 22 H -0.206 1.206 23 H -0.198 1.198 24 H -0.217 1.217 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.614 -1.705 -13.357 14.234 hybrid contribution -0.240 0.115 0.878 0.917 sum 4.374 -1.590 -12.479 13.319 Atomic orbital electron populations 1.21948 0.96617 1.01364 1.01183 1.21402 0.95538 0.95283 1.01652 1.22841 0.95809 0.95581 0.91363 0.92957 1.22304 0.93888 0.98647 1.00149 1.22252 0.95992 0.98067 0.99249 1.23142 0.93251 0.94186 0.99745 1.65482 1.02397 1.22762 1.31616 1.22204 0.90017 0.95514 0.95687 0.89372 1.22214 0.97558 0.99278 0.99489 1.21396 0.95895 1.00604 0.96186 1.21540 0.99943 0.97847 0.95813 1.21466 0.98644 0.95576 0.98953 1.18468 0.91760 0.93808 0.91054 0.99934 1.21418 1.40724 0.96757 0.93081 0.93085 1.25622 0.96320 0.97399 0.99851 1.70028 1.48568 1.23800 1.14447 0.85831 0.78134 0.80748 0.78540 1.20554 1.19836 1.21708 0.92671 0.92041 0.93753 0.89879 0.93118 0.91280 0.89548 0.92165 0.89884 0.92909 0.93813 0.92670 0.91467 0.90853 0.92107 0.94180 0.92377 0.95520 0.92597 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 8.31 71.98 0.60 -3.93 16 2 C -0.10 -2.82 5.54 30.59 0.17 -2.65 16 3 C 0.05 1.53 2.33 45.05 0.10 1.63 16 4 H 0.05 1.45 6.23 -2.39 -0.01 1.44 16 5 C -0.11 -2.75 6.55 31.49 0.21 -2.54 16 6 C -0.12 -3.19 7.00 31.49 0.22 -2.97 16 7 C 0.02 0.87 5.60 86.45 0.48 1.35 16 8 N -0.50 -18.86 4.52 -831.67 -3.76 -22.62 16 9 C 0.07 2.95 1.31 44.92 0.06 3.01 16 10 H 0.09 3.55 3.76 -2.39 -0.01 3.54 16 11 C -0.15 -4.90 4.27 30.60 0.13 -4.77 16 12 C -0.10 -3.26 5.92 30.59 0.18 -3.08 16 13 C -0.11 -4.36 5.92 30.59 0.18 -4.18 16 14 C -0.11 -5.17 4.98 30.58 0.15 -5.02 16 15 C 0.07 3.39 1.61 -11.55 -0.02 3.37 16 16 H -0.02 -1.00 7.50 -2.39 -0.02 -1.02 16 17 C -0.48 -26.89 8.19 25.60 0.21 -26.68 16 18 H 0.05 2.89 7.67 -2.91 -0.02 2.87 16 19 C 0.00 0.23 5.30 84.65 0.45 0.68 16 20 N -0.93 -55.44 11.32 21.45 0.24 -55.19 16 21 Si 0.94 45.98 29.54 68.60 2.03 48.01 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H 0.05 1.51 7.62 -2.39 -0.02 1.49 16 26 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.04 1.63 6.34 -2.39 -0.02 1.62 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.68 7.86 -2.39 -0.02 1.67 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.75 5.14 -2.39 -0.01 1.74 16 35 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 36 H 0.05 1.93 5.92 -2.39 -0.01 1.91 16 37 H 0.07 1.94 6.50 -2.39 -0.02 1.93 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -62.19 315.88 2.58 -59.60 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.95 Total: 15.98 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 3.13 Total: -45.78 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.52 Total: -77.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -62.19 2.58 -59.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -62.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.82 seconds