Wall clock time and date at job start Mon Mar 30 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46916 * 2 1 4 4 H 1.09002 * 110.72878 * 303.75317 * 3 2 1 5 5 C 1.54930 * 110.66772 * 180.64990 * 3 2 1 6 6 C 1.54606 * 102.92090 * 204.15231 * 5 3 2 7 7 C 1.53994 * 105.13837 * 21.95965 * 6 5 3 8 8 N 1.47897 * 107.06099 * 1.22151 * 7 6 5 9 9 C 1.46896 * 111.00279 * 214.15721 * 8 7 6 10 10 H 1.08998 * 109.47069 * 210.45785 * 9 8 7 11 11 C 1.53000 * 109.47078 * 330.46104 * 9 8 7 12 12 C 1.52996 * 109.47116 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47095 * 300.00226 * 12 11 9 14 14 C 1.53000 * 109.47323 * 59.99901 * 13 12 11 15 15 C 1.52996 * 109.47116 * 300.00086 * 14 13 12 16 16 H 1.09000 * 109.47064 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47212 * 300.00089 * 15 14 13 18 18 H 1.08000 * 120.00369 * 114.14028 * 17 15 14 19 19 C 1.37877 * 119.99950 * 294.14018 * 17 15 14 20 20 N 1.31515 * 120.00253 * 180.02562 * 19 17 15 21 21 Si 1.86804 * 119.99910 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.46840 * 90.00121 * 21 19 17 23 23 H 1.48499 * 109.47367 * 210.00050 * 21 19 17 24 24 H 1.48501 * 109.47264 * 330.00449 * 21 19 17 25 25 H 1.08997 * 109.46876 * 187.06699 * 1 2 3 26 26 H 1.09000 * 109.47213 * 307.06406 * 1 2 3 27 27 H 1.08995 * 109.47469 * 67.06692 * 1 2 3 28 28 H 1.08994 * 109.47299 * 240.00573 * 2 1 3 29 29 H 1.08996 * 109.47426 * 119.99538 * 2 1 3 30 30 H 1.09003 * 110.72582 * 85.79573 * 5 3 2 31 31 H 1.08996 * 110.87923 * 322.57994 * 5 3 2 32 32 H 1.08999 * 110.30533 * 263.04047 * 6 5 3 33 33 H 1.09002 * 110.30302 * 140.87532 * 6 5 3 34 34 H 1.09007 * 109.91250 * 241.87024 * 7 6 5 35 35 H 1.08994 * 109.91743 * 120.57750 * 7 6 5 36 36 H 1.08997 * 109.46925 * 60.00045 * 11 9 8 37 37 H 1.08993 * 109.46999 * 300.00098 * 11 9 8 38 38 H 1.09000 * 109.47064 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46992 * 59.99705 * 12 11 9 40 40 H 1.08999 * 109.47178 * 180.02562 * 13 12 11 41 41 H 1.09007 * 109.46969 * 299.99460 * 13 12 11 42 42 H 1.08997 * 109.46925 * 59.99970 * 14 13 12 43 43 H 1.09000 * 109.46688 * 180.02562 * 14 13 12 44 44 H 0.96998 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9951 -0.8476 5 6 3.5889 1.4750 -0.0164 6 6 3.9124 2.8546 0.6019 7 6 2.6588 3.2367 1.4106 8 7 1.6994 2.1190 1.2778 9 6 0.3158 2.6121 1.2600 10 1 -0.3436 1.8600 1.6933 11 6 0.2237 3.9026 2.0768 12 6 -1.2173 4.4165 2.0577 13 6 -1.6402 4.6953 0.6139 14 6 -1.5481 3.4048 -0.2028 15 6 -0.1072 2.8909 -0.1837 16 1 -0.0415 1.9718 -0.7660 17 6 0.8049 3.9305 -0.7824 18 1 1.5451 4.4191 -0.1660 19 6 0.6946 4.2580 -2.1172 20 7 1.4908 5.1649 -2.6398 21 14 -0.5851 3.4125 -3.1836 22 1 -1.8517 4.1868 -3.1446 23 1 -0.0930 3.3387 -4.5827 24 1 -0.8280 2.0401 -2.6712 25 1 -0.3633 -1.0198 0.1264 26 1 -0.3633 0.6194 0.8200 27 1 -0.3634 0.4004 -0.9464 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.9652 1.4122 -1.0375 31 1 4.0008 0.6722 0.5950 32 1 4.0940 3.5880 -0.1837 33 1 4.7787 2.7807 1.2593 34 1 2.2219 4.1508 1.0083 35 1 2.9218 3.3778 2.4588 36 1 0.8830 4.6546 1.6434 37 1 0.5254 3.7040 3.1051 38 1 -1.2829 5.3356 2.6399 39 1 -1.8769 3.6645 2.4907 40 1 -2.6666 5.0619 0.6004 41 1 -0.9805 5.4473 0.1809 42 1 -2.2078 2.6530 0.2303 43 1 -1.8490 3.6037 -1.2314 44 1 1.4129 5.3955 -3.5788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260925065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:10 Heat of formation + Delta-G solvation = 19.593855 kcal Electronic energy + Delta-G solvation = -21363.739928 eV Core-core repulsion = 18702.401188 eV Total energy + Delta-G solvation = -2661.338740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.02423 -36.32800 -33.10899 -32.46887 -31.45046 -29.96164 -27.35381 -27.01989 -25.02830 -22.98629 -21.49034 -21.14584 -19.97821 -19.06419 -17.89228 -16.44811 -16.00945 -15.02754 -14.47073 -14.31450 -13.71131 -13.49239 -13.09305 -12.80260 -12.46462 -12.33994 -12.18806 -12.08454 -11.66238 -11.41347 -11.31670 -11.01725 -10.89249 -10.63169 -10.43571 -10.29176 -10.20906 -10.00996 -9.83437 -9.75816 -9.71581 -9.49893 -9.19011 -8.90767 -8.62205 -8.49445 -7.13556 -6.07567 -4.04149 3.25027 3.35900 3.36627 4.39189 4.89377 5.24449 5.40069 5.42204 5.61598 5.65722 5.70656 5.77407 5.84617 5.93463 6.01629 6.18702 6.24876 6.28855 6.31547 6.37850 6.42114 6.43742 6.45586 6.48458 6.52844 6.59450 6.63459 6.69119 6.76219 6.78019 6.82838 6.90368 6.93195 7.08481 7.11495 7.27707 7.31600 7.36962 7.47166 7.78085 7.94748 8.10756 8.51122 8.97191 9.54015 11.02727 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.012808 C = 0.010989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.082202 B = 2185.583262 C = 2547.499592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C 0.041 3.959 4 H 0.116 0.884 5 C -0.114 4.114 6 C -0.123 4.123 7 C 0.023 3.977 8 N -0.502 5.502 9 C 0.090 3.910 10 H 0.063 0.937 11 C -0.118 4.118 12 C -0.107 4.107 13 C -0.107 4.107 14 C -0.115 4.115 15 C -0.033 4.033 16 H 0.055 0.945 17 C -0.506 4.506 18 H 0.092 0.908 19 C 0.074 3.926 20 N -0.899 5.899 21 Si 0.870 3.130 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.264 1.264 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -5.493 6.207 8.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.141 4.141 3 C -0.067 4.067 4 H 0.133 0.867 5 C -0.152 4.152 6 C -0.162 4.162 7 C -0.105 4.105 8 N -0.225 5.225 9 C -0.018 4.018 10 H 0.081 0.919 11 C -0.156 4.156 12 C -0.145 4.145 13 C -0.145 4.145 14 C -0.153 4.153 15 C -0.053 4.053 16 H 0.073 0.927 17 C -0.544 4.544 18 H 0.109 0.891 19 C -0.127 4.127 20 N -0.537 5.537 21 Si 0.700 3.300 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.189 1.189 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.979 -5.761 6.498 8.739 hybrid contribution -0.884 0.223 -1.446 1.709 sum -1.863 -5.538 5.052 7.725 Atomic orbital electron populations 1.22290 0.96673 1.00371 1.03105 1.21377 0.95650 0.96668 1.00417 1.23344 0.93727 0.94297 0.95292 0.86711 1.22388 0.96445 0.96740 0.99605 1.22268 0.97301 0.97417 0.99165 1.23199 0.92466 0.96646 0.98146 1.65106 1.02203 1.22706 1.32485 1.21760 0.89852 0.94042 0.96187 0.91921 1.21828 0.96923 0.98412 0.98387 1.21396 0.96745 0.99313 0.97068 1.21381 0.99063 0.99184 0.94834 1.21774 0.99176 0.96255 0.98103 1.20277 0.92404 0.98319 0.94264 0.92723 1.21285 1.17659 1.20693 0.94728 0.89078 1.24947 0.95257 0.94665 0.97858 1.69881 1.38392 1.31969 1.13450 0.87071 0.82273 0.81099 0.79517 1.20676 1.22563 1.18927 0.94470 0.90598 0.92512 0.92953 0.92546 0.92291 0.92634 0.91343 0.93095 0.89427 0.92980 0.90160 0.93592 0.93329 0.93505 0.94636 0.90357 0.95016 0.93930 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.44 37.16 0.31 -2.52 16 2 C -0.10 -1.75 5.68 -26.73 -0.15 -1.90 16 3 C 0.04 0.79 2.01 -65.78 -0.13 0.65 16 4 H 0.12 2.60 4.00 -51.93 -0.21 2.39 16 5 C -0.11 -2.01 6.50 -24.87 -0.16 -2.17 16 6 C -0.12 -2.23 6.93 -25.37 -0.18 -2.40 16 7 C 0.02 0.43 4.84 -2.76 -0.01 0.42 16 8 N -0.50 -9.53 5.20 -214.72 -1.12 -10.64 16 9 C 0.09 1.72 1.82 -67.71 -0.12 1.60 16 10 H 0.06 1.18 5.95 -51.93 -0.31 0.87 16 11 C -0.12 -2.14 4.13 -26.73 -0.11 -2.26 16 12 C -0.11 -1.83 5.92 -26.73 -0.16 -1.98 16 13 C -0.11 -2.06 5.70 -26.73 -0.15 -2.22 16 14 C -0.11 -2.37 5.05 -26.73 -0.13 -2.50 16 15 C -0.03 -0.71 0.69 -91.77 -0.06 -0.77 16 16 H 0.06 1.21 1.76 -51.93 -0.09 1.12 16 17 C -0.51 -12.39 4.64 -34.44 -0.16 -12.55 16 18 H 0.09 2.38 4.01 -52.49 -0.21 2.17 16 19 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 20 N -0.90 -25.70 13.96 55.43 0.77 -24.93 16 21 Si 0.87 21.02 24.69 -169.99 -4.20 16.83 16 22 H -0.28 -6.77 6.89 56.52 0.39 -6.38 16 23 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.26 -6.12 6.38 56.52 0.36 -5.76 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.33 4.13 -51.93 -0.21 1.11 16 27 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.86 2.88 -51.92 -0.15 1.72 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.61 4.94 -51.93 -0.26 1.35 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.71 7.22 -51.92 -0.37 1.34 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.94 4.06 -51.93 -0.21 0.73 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -26.00 291.54 -8.51 -34.51 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.04 Total: 6.58 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -1.32 Total: -26.74 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.34 Total: -35.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.20 Total: 16.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.00 -8.51 -34.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.104 kcal (2) G-P(sol) polarization free energy of solvation -26.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds