Wall clock time and date at job start Mon Mar 30 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46916 * 2 1 4 4 H 1.09002 * 110.72878 * 303.75317 * 3 2 1 5 5 C 1.54930 * 110.66772 * 180.64990 * 3 2 1 6 6 C 1.54606 * 102.92090 * 204.15231 * 5 3 2 7 7 C 1.53994 * 105.13837 * 21.95965 * 6 5 3 8 8 N 1.47897 * 107.06099 * 1.22151 * 7 6 5 9 9 C 1.46896 * 111.00279 * 214.15721 * 8 7 6 10 10 H 1.08998 * 109.47069 * 210.45785 * 9 8 7 11 11 C 1.53000 * 109.47078 * 330.46104 * 9 8 7 12 12 C 1.52996 * 109.47116 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47095 * 300.00226 * 12 11 9 14 14 C 1.53000 * 109.47323 * 59.99901 * 13 12 11 15 15 C 1.52996 * 109.47116 * 300.00086 * 14 13 12 16 16 H 1.09000 * 109.47064 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47212 * 300.00089 * 15 14 13 18 18 H 1.08000 * 120.00369 * 114.14028 * 17 15 14 19 19 C 1.37877 * 119.99950 * 294.14018 * 17 15 14 20 20 N 1.31515 * 120.00253 * 180.02562 * 19 17 15 21 21 Si 1.86804 * 119.99910 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.46840 * 90.00121 * 21 19 17 23 23 H 1.48499 * 109.47367 * 210.00050 * 21 19 17 24 24 H 1.48501 * 109.47264 * 330.00449 * 21 19 17 25 25 H 1.08997 * 109.46876 * 187.06699 * 1 2 3 26 26 H 1.09000 * 109.47213 * 307.06406 * 1 2 3 27 27 H 1.08995 * 109.47469 * 67.06692 * 1 2 3 28 28 H 1.08994 * 109.47299 * 240.00573 * 2 1 3 29 29 H 1.08996 * 109.47426 * 119.99538 * 2 1 3 30 30 H 1.09003 * 110.72582 * 85.79573 * 5 3 2 31 31 H 1.08996 * 110.87923 * 322.57994 * 5 3 2 32 32 H 1.08999 * 110.30533 * 263.04047 * 6 5 3 33 33 H 1.09002 * 110.30302 * 140.87532 * 6 5 3 34 34 H 1.09007 * 109.91250 * 241.87024 * 7 6 5 35 35 H 1.08994 * 109.91743 * 120.57750 * 7 6 5 36 36 H 1.08997 * 109.46925 * 60.00045 * 11 9 8 37 37 H 1.08993 * 109.46999 * 300.00098 * 11 9 8 38 38 H 1.09000 * 109.47064 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46992 * 59.99705 * 12 11 9 40 40 H 1.08999 * 109.47178 * 180.02562 * 13 12 11 41 41 H 1.09007 * 109.46969 * 299.99460 * 13 12 11 42 42 H 1.08997 * 109.46925 * 59.99970 * 14 13 12 43 43 H 1.09000 * 109.46688 * 180.02562 * 14 13 12 44 44 H 0.96998 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9951 -0.8476 5 6 3.5889 1.4750 -0.0164 6 6 3.9124 2.8546 0.6019 7 6 2.6588 3.2367 1.4106 8 7 1.6994 2.1190 1.2778 9 6 0.3158 2.6121 1.2600 10 1 -0.3436 1.8600 1.6933 11 6 0.2237 3.9026 2.0768 12 6 -1.2173 4.4165 2.0577 13 6 -1.6402 4.6953 0.6139 14 6 -1.5481 3.4048 -0.2028 15 6 -0.1072 2.8909 -0.1837 16 1 -0.0415 1.9718 -0.7660 17 6 0.8049 3.9305 -0.7824 18 1 1.5451 4.4191 -0.1660 19 6 0.6946 4.2580 -2.1172 20 7 1.4908 5.1649 -2.6398 21 14 -0.5851 3.4125 -3.1836 22 1 -1.8517 4.1868 -3.1446 23 1 -0.0930 3.3387 -4.5827 24 1 -0.8280 2.0401 -2.6712 25 1 -0.3633 -1.0198 0.1264 26 1 -0.3633 0.6194 0.8200 27 1 -0.3634 0.4004 -0.9464 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.9652 1.4122 -1.0375 31 1 4.0008 0.6722 0.5950 32 1 4.0940 3.5880 -0.1837 33 1 4.7787 2.7807 1.2593 34 1 2.2219 4.1508 1.0083 35 1 2.9218 3.3778 2.4588 36 1 0.8830 4.6546 1.6434 37 1 0.5254 3.7040 3.1051 38 1 -1.2829 5.3356 2.6399 39 1 -1.8769 3.6645 2.4907 40 1 -2.6666 5.0619 0.6004 41 1 -0.9805 5.4473 0.1809 42 1 -2.2078 2.6530 0.2303 43 1 -1.8490 3.6037 -1.2314 44 1 1.4129 5.3955 -3.5788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260925065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:08 Heat of formation + Delta-G solvation = 4.254895 kcal Electronic energy + Delta-G solvation = -21364.405075 eV Core-core repulsion = 18702.401188 eV Total energy + Delta-G solvation = -2662.003887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.58565 -37.85403 -34.66389 -34.27949 -32.95693 -31.62280 -28.88880 -28.51524 -26.83624 -24.45201 -23.07972 -22.64129 -21.61070 -20.53327 -19.53634 -18.25436 -17.56995 -16.56715 -16.25322 -16.01150 -15.18598 -15.07577 -14.71055 -14.35362 -14.05730 -13.87364 -13.78630 -13.58593 -13.28012 -12.96476 -12.85824 -12.62634 -12.48182 -12.17516 -12.06152 -11.93782 -11.69288 -11.64221 -11.49548 -11.26672 -11.21291 -10.99111 -10.80543 -10.62333 -10.51651 -10.23812 -8.74638 -8.13428 -6.09182 1.28782 1.35064 1.40768 2.38691 3.19051 3.43247 3.94105 3.96315 4.12069 4.20089 4.25364 4.32767 4.43314 4.49773 4.61552 4.67682 4.73266 4.79739 4.84461 4.85417 4.90730 4.98871 5.02025 5.05837 5.10909 5.14131 5.18829 5.21847 5.29092 5.30948 5.35971 5.43814 5.46897 5.52820 5.56838 5.67368 5.72842 5.79132 5.85700 5.93520 6.38006 6.50721 6.56342 6.97556 7.50087 8.99103 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.012808 C = 0.010989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.082202 B = 2185.583262 C = 2547.499592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C 0.037 3.963 4 H 0.075 0.925 5 C -0.111 4.111 6 C -0.122 4.122 7 C 0.024 3.976 8 N -0.494 5.494 9 C 0.092 3.908 10 H 0.079 0.921 11 C -0.115 4.115 12 C -0.101 4.101 13 C -0.106 4.106 14 C -0.119 4.119 15 C -0.033 4.033 16 H 0.053 0.947 17 C -0.472 4.472 18 H 0.071 0.929 19 C 0.021 3.979 20 N -0.949 5.949 21 Si 0.913 3.087 22 H -0.281 1.281 23 H -0.310 1.310 24 H -0.247 1.247 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -7.670 8.459 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.137 4.137 3 C -0.071 4.071 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.103 4.103 8 N -0.217 5.217 9 C -0.017 4.017 10 H 0.097 0.903 11 C -0.153 4.153 12 C -0.139 4.139 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.052 4.052 16 H 0.070 0.930 17 C -0.510 4.510 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.591 5.591 21 Si 0.743 3.257 22 H -0.208 1.208 23 H -0.239 1.239 24 H -0.171 1.171 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.995 -7.959 8.768 12.008 hybrid contribution -0.536 0.902 -2.072 2.322 sum -2.531 -7.057 6.697 10.052 Atomic orbital electron populations 1.22225 0.96472 1.01698 1.01680 1.21354 0.95802 0.94970 1.01564 1.23266 0.94654 0.95393 0.93795 0.90690 1.22400 0.95586 0.97058 0.99844 1.22242 0.98105 0.96957 0.98737 1.23151 0.92658 0.95524 0.99004 1.65190 1.02103 1.22323 1.32044 1.21789 0.90164 0.94989 0.94717 0.90316 1.21784 0.97412 0.97165 0.98927 1.21371 0.96111 1.00831 0.95616 1.21337 0.99472 0.97505 0.96043 1.21784 0.98777 0.97643 0.97534 1.20268 0.92310 0.96917 0.95712 0.92952 1.21523 1.16318 1.19328 0.93844 0.91155 1.25511 0.96975 0.95643 0.99389 1.70012 1.41025 1.34738 1.13353 0.86362 0.80432 0.81216 0.77697 1.20753 1.23891 1.17118 0.91957 0.91073 0.94536 0.92096 0.91016 0.92771 0.90227 0.94372 0.90443 0.92264 0.91193 0.92791 0.91730 0.91655 0.91181 0.92671 0.94055 0.92363 0.95867 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.44 71.98 0.61 -4.43 16 2 C -0.10 -3.07 5.68 30.60 0.17 -2.90 16 3 C 0.04 1.36 2.01 45.26 0.09 1.46 16 4 H 0.08 3.41 4.00 -2.39 -0.01 3.40 16 5 C -0.11 -3.76 6.50 31.80 0.21 -3.56 16 6 C -0.12 -4.35 6.93 31.48 0.22 -4.13 16 7 C 0.02 0.90 4.84 86.45 0.42 1.31 16 8 N -0.49 -17.75 5.20 -833.26 -4.33 -22.08 16 9 C 0.09 3.31 1.82 44.92 0.08 3.39 16 10 H 0.08 2.66 5.95 -2.39 -0.01 2.65 16 11 C -0.12 -3.95 4.13 30.59 0.13 -3.83 16 12 C -0.10 -3.15 5.92 30.59 0.18 -2.97 16 13 C -0.11 -3.92 5.70 30.60 0.17 -3.75 16 14 C -0.12 -4.71 5.05 30.59 0.15 -4.56 16 15 C -0.03 -1.36 0.69 -11.54 -0.01 -1.37 16 16 H 0.05 2.26 1.76 -2.39 0.00 2.26 16 17 C -0.47 -23.69 4.64 25.60 0.12 -23.57 16 18 H 0.07 3.85 4.01 -2.91 -0.01 3.83 16 19 C 0.02 1.13 5.46 84.65 0.46 1.59 16 20 N -0.95 -57.13 13.96 21.45 0.30 -56.83 16 21 Si 0.91 44.30 24.69 68.60 1.69 46.00 16 22 H -0.28 -13.49 6.89 99.48 0.68 -12.81 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 24 H -0.25 -11.14 6.38 99.48 0.63 -10.50 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 2.23 4.13 -2.39 -0.01 2.22 16 27 H 0.04 1.26 6.48 -2.39 -0.02 1.24 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.33 8.06 -2.39 -0.02 2.31 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.58 2.88 -2.38 -0.01 2.58 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.16 4.94 -2.39 -0.01 2.15 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.82 7.22 -2.38 -0.02 1.80 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.02 1.00 4.06 -2.39 -0.01 0.99 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -57.59 291.54 1.56 -56.03 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.89 Total: 24.20 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 3.01 Total: -47.31 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -4.03 Total: -78.92 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.69 Total: 46.00 kcal Total: -57.59 1.56 -56.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.282 kcal (2) G-P(sol) polarization free energy of solvation -57.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds