Wall clock time and date at job start Mon Mar 30 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47009 * 119.99665 * 2 1 3 5 5 H 1.09007 * 110.63160 * 296.89773 * 4 2 1 6 6 C 1.55137 * 110.85766 * 173.68500 * 4 2 1 7 7 C 1.54909 * 101.65604 * 205.89515 * 6 4 2 8 8 N 1.47846 * 104.79184 * 37.06954 * 7 6 4 9 9 C 1.46899 * 110.99839 * 213.63321 * 8 7 6 10 10 H 1.09005 * 110.01594 * 63.65839 * 9 8 7 11 11 C 1.54260 * 110.03477 * 302.26199 * 9 8 7 12 12 C 1.54887 * 104.31694 * 216.98840 * 11 9 8 13 13 C 1.55245 * 102.58625 * 37.93324 * 12 11 9 14 14 H 1.09003 * 110.46700 * 80.77220 * 13 12 11 15 15 C 1.50699 * 110.58136 * 203.33728 * 13 12 11 16 16 H 1.08003 * 119.99668 * 114.87246 * 15 13 12 17 17 C 1.37873 * 120.00278 * 294.87784 * 15 13 12 18 18 N 1.31516 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47246 * 59.99248 * 19 17 15 21 21 H 1.48505 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46948 * 299.99367 * 19 17 15 23 23 C 1.53875 * 110.07470 * 185.07131 * 9 8 7 24 24 C 1.47438 * 108.56896 * 335.90563 * 8 7 6 25 25 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47045 * 300.00272 * 1 2 3 27 27 H 1.09009 * 109.46946 * 59.99817 * 1 2 3 28 28 H 1.08999 * 109.47379 * 240.00155 * 2 1 3 29 29 H 1.09004 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47507 * 299.99651 * 3 2 1 31 31 H 1.09000 * 109.47392 * 59.99941 * 3 2 1 32 32 H 1.09002 * 110.98751 * 323.98963 * 6 4 2 33 33 H 1.09006 * 110.98806 * 87.76798 * 6 4 2 34 34 H 1.08994 * 110.37085 * 278.24386 * 7 6 4 35 35 H 1.08993 * 110.37369 * 155.89721 * 7 6 4 36 36 H 1.09001 * 110.48823 * 335.73370 * 11 9 8 37 37 H 1.09006 * 110.48721 * 98.24797 * 11 9 8 38 38 H 1.09003 * 110.76185 * 156.32236 * 12 11 9 39 39 H 1.08999 * 110.76137 * 279.69873 * 12 11 9 40 40 H 0.97003 * 120.00084 * 180.02562 * 18 17 15 41 41 H 1.08995 * 110.03584 * 238.59665 * 23 9 8 42 42 H 1.09009 * 110.02964 * 0.02566 * 23 9 8 43 43 H 1.09005 * 109.89007 * 120.39759 * 24 8 7 44 44 H 1.09002 * 109.88895 * 241.58226 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7329 -0.1912 2.1510 6 6 3.5826 -0.8795 1.2046 7 6 3.7948 -2.1293 2.0950 8 7 2.6487 -3.0111 1.7871 9 6 2.2349 -3.7704 2.9746 10 1 1.8782 -3.0893 3.7474 11 6 3.4189 -4.6024 3.5089 12 6 2.7709 -5.9229 3.9943 13 6 1.6766 -6.1765 2.9228 14 1 2.1129 -6.6281 2.0318 15 6 0.5855 -7.0555 3.4777 16 1 -0.4142 -6.6647 3.5976 17 6 0.8634 -8.3585 3.8325 18 7 2.0806 -8.8345 3.6862 19 14 -0.4893 -9.4482 4.5197 20 1 -1.5800 -9.5734 3.5198 21 1 0.0634 -10.7935 4.8199 22 1 -1.0266 -8.8442 5.7654 23 6 1.1271 -4.7712 2.6020 24 6 1.5414 -2.1813 1.2781 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9270 -1.0622 0.1867 33 1 4.0772 -0.0069 1.6314 34 1 3.7867 -1.8504 3.1486 35 1 4.7325 -2.6226 1.8392 36 1 4.1366 -4.7999 2.7126 37 1 3.9032 -4.0877 4.3388 38 1 3.5017 -6.7316 4.0027 39 1 2.3241 -5.7944 4.9801 40 1 2.2761 -9.7514 3.9354 41 1 0.2329 -4.5759 3.1938 42 1 0.8963 -4.6942 1.5394 43 1 1.2709 -2.5007 0.2716 44 1 0.6798 -2.2659 1.9404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260925101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:50 Heat of formation + Delta-G solvation = -28.665643 kcal Electronic energy + Delta-G solvation = -19272.382452 eV Core-core repulsion = 16608.951023 eV Total energy + Delta-G solvation = -2663.431429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51943 -36.95593 -34.68161 -32.31778 -30.14648 -28.98734 -27.70568 -27.02428 -26.03177 -23.72622 -21.86058 -21.16246 -19.83322 -19.21571 -18.41170 -16.47822 -16.05102 -15.43067 -14.70479 -14.46986 -14.06024 -13.66636 -13.28509 -13.17152 -12.87569 -12.69019 -12.33129 -12.23548 -12.11391 -11.90891 -11.59091 -11.25195 -10.99786 -10.94393 -10.66303 -10.58597 -10.51619 -10.47930 -10.44921 -10.12327 -9.91205 -9.72035 -9.44617 -9.06363 -8.69171 -8.27206 -7.84165 -5.92249 -3.94525 3.36468 3.41005 3.43571 4.34463 4.50425 4.57515 4.61429 4.77949 5.05870 5.23271 5.30458 5.38955 5.44832 5.51015 5.52711 5.63388 5.68518 5.72612 5.72980 5.81314 5.86595 5.91951 6.01712 6.05491 6.10459 6.14048 6.21084 6.26073 6.40899 6.44306 6.64710 6.67181 6.79590 6.95427 7.15315 7.28949 7.40389 7.46124 7.71766 7.79837 7.98386 8.15500 8.56184 9.08429 9.68686 11.17271 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.004547 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.056054 B = 6157.018857 C = 6722.523329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.105 4.105 5 H 0.070 0.930 6 C -0.123 4.123 7 C 0.043 3.957 8 N -0.521 5.521 9 C 0.079 3.921 10 H 0.028 0.972 11 C -0.120 4.120 12 C -0.099 4.099 13 C 0.053 3.947 14 H 0.032 0.968 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.107 4.107 24 C 0.050 3.950 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.259 0.741 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 17.787 -5.165 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.124 4.124 5 H 0.089 0.911 6 C -0.161 4.161 7 C -0.084 4.084 8 N -0.246 5.246 9 C -0.029 4.029 10 H 0.046 0.954 11 C -0.158 4.158 12 C -0.138 4.138 13 C 0.034 3.966 14 H 0.050 0.950 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.145 4.145 24 C -0.078 4.078 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.871 17.242 -5.503 18.195 hybrid contribution -0.964 -0.065 1.136 1.491 sum 0.907 17.177 -4.368 17.747 Atomic orbital electron populations 1.21876 0.95270 1.02183 1.01356 1.21081 0.95688 0.95818 0.97752 1.21841 1.01020 0.96086 1.01379 1.22472 0.95557 0.96440 0.97971 0.91142 1.22762 0.95305 0.97418 1.00617 1.22972 0.95752 0.92228 0.97486 1.63776 1.05432 1.23803 1.31555 1.22594 0.96953 0.94465 0.88892 0.95435 1.22525 0.96651 0.97881 0.98724 1.22463 0.98941 0.93282 0.99070 1.19437 0.93236 0.89451 0.94459 0.95008 1.21198 0.95504 0.96296 1.42117 0.92927 1.24973 0.95258 0.97887 0.95799 1.69958 1.19017 1.15644 1.48237 0.86742 0.82410 0.79784 0.79521 1.20365 1.21384 1.20401 1.22322 0.95721 0.96845 0.99615 1.22851 0.93937 0.90149 1.00892 0.92149 0.92919 0.92946 0.90963 0.92662 0.92954 0.92965 0.90833 0.91503 0.94100 0.90617 0.91778 0.94152 0.91529 0.93679 0.93139 0.93253 0.92937 0.90830 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.96 37.16 0.33 -1.08 16 2 C -0.08 -0.82 2.31 -90.62 -0.21 -1.03 16 3 C -0.15 -1.22 9.04 37.16 0.34 -0.88 16 4 C -0.11 -1.20 2.48 -88.80 -0.22 -1.42 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.12 -1.38 5.69 -24.59 -0.14 -1.52 16 7 C 0.04 0.60 5.77 -2.30 -0.01 0.59 16 8 N -0.52 -8.60 4.92 -221.97 -1.09 -9.69 16 9 C 0.08 1.49 2.19 -66.60 -0.15 1.34 16 10 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 11 C -0.12 -2.37 5.57 -25.08 -0.14 -2.51 16 12 C -0.10 -2.37 5.77 -24.55 -0.14 -2.51 16 13 C 0.05 1.36 2.72 -89.92 -0.24 1.11 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.51 -14.41 8.47 -34.44 -0.29 -14.70 16 16 H 0.05 1.46 7.55 -52.48 -0.40 1.06 16 17 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 18 N -0.89 -26.09 12.30 55.43 0.68 -25.41 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -2.32 5.40 -25.61 -0.14 -2.45 16 24 C 0.05 0.71 4.57 -2.84 -0.01 0.69 16 25 H 0.06 0.61 7.06 -51.93 -0.37 0.25 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.05 0.45 7.49 -51.93 -0.39 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 33 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.72 7.57 -51.93 -0.39 1.33 16 39 H 0.04 1.10 8.06 -51.93 -0.42 0.68 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 42 H 0.05 1.12 7.38 -51.92 -0.38 0.73 16 43 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 44 H 0.05 0.80 7.23 -51.93 -0.38 0.43 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -28.57 331.43 -10.08 -38.65 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.52 Total: -2.47 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.12 Total: -22.70 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.41 Total: -35.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.57 -10.08 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.984 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds