Wall clock time and date at job start Mon Mar 30 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47009 * 119.99665 * 2 1 3 5 5 H 1.09007 * 110.63160 * 296.89773 * 4 2 1 6 6 C 1.55137 * 110.85766 * 173.68500 * 4 2 1 7 7 C 1.54909 * 101.65604 * 205.89515 * 6 4 2 8 8 N 1.47846 * 104.79184 * 37.06954 * 7 6 4 9 9 C 1.46899 * 110.99839 * 213.63321 * 8 7 6 10 10 H 1.09005 * 110.01594 * 63.65839 * 9 8 7 11 11 C 1.54260 * 110.03477 * 302.26199 * 9 8 7 12 12 C 1.54887 * 104.31694 * 216.98840 * 11 9 8 13 13 C 1.55245 * 102.58625 * 37.93324 * 12 11 9 14 14 H 1.09003 * 110.46700 * 80.77220 * 13 12 11 15 15 C 1.50699 * 110.58136 * 203.33728 * 13 12 11 16 16 H 1.08003 * 119.99668 * 114.87246 * 15 13 12 17 17 C 1.37873 * 120.00278 * 294.87784 * 15 13 12 18 18 N 1.31516 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47246 * 59.99248 * 19 17 15 21 21 H 1.48505 * 109.47070 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46948 * 299.99367 * 19 17 15 23 23 C 1.53875 * 110.07470 * 185.07131 * 9 8 7 24 24 C 1.47438 * 108.56896 * 335.90563 * 8 7 6 25 25 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47045 * 300.00272 * 1 2 3 27 27 H 1.09009 * 109.46946 * 59.99817 * 1 2 3 28 28 H 1.08999 * 109.47379 * 240.00155 * 2 1 3 29 29 H 1.09004 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47507 * 299.99651 * 3 2 1 31 31 H 1.09000 * 109.47392 * 59.99941 * 3 2 1 32 32 H 1.09002 * 110.98751 * 323.98963 * 6 4 2 33 33 H 1.09006 * 110.98806 * 87.76798 * 6 4 2 34 34 H 1.08994 * 110.37085 * 278.24386 * 7 6 4 35 35 H 1.08993 * 110.37369 * 155.89721 * 7 6 4 36 36 H 1.09001 * 110.48823 * 335.73370 * 11 9 8 37 37 H 1.09006 * 110.48721 * 98.24797 * 11 9 8 38 38 H 1.09003 * 110.76185 * 156.32236 * 12 11 9 39 39 H 1.08999 * 110.76137 * 279.69873 * 12 11 9 40 40 H 0.97003 * 120.00084 * 180.02562 * 18 17 15 41 41 H 1.08995 * 110.03584 * 238.59665 * 23 9 8 42 42 H 1.09009 * 110.02964 * 0.02566 * 23 9 8 43 43 H 1.09005 * 109.89007 * 120.39759 * 24 8 7 44 44 H 1.09002 * 109.88895 * 241.58226 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7329 -0.1912 2.1510 6 6 3.5826 -0.8795 1.2046 7 6 3.7948 -2.1293 2.0950 8 7 2.6487 -3.0111 1.7871 9 6 2.2349 -3.7704 2.9746 10 1 1.8782 -3.0893 3.7474 11 6 3.4189 -4.6024 3.5089 12 6 2.7709 -5.9229 3.9943 13 6 1.6766 -6.1765 2.9228 14 1 2.1129 -6.6281 2.0318 15 6 0.5855 -7.0555 3.4777 16 1 -0.4142 -6.6647 3.5976 17 6 0.8634 -8.3585 3.8325 18 7 2.0806 -8.8345 3.6862 19 14 -0.4893 -9.4482 4.5197 20 1 -1.5800 -9.5734 3.5198 21 1 0.0634 -10.7935 4.8199 22 1 -1.0266 -8.8442 5.7654 23 6 1.1271 -4.7712 2.6020 24 6 1.5414 -2.1813 1.2781 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9270 -1.0622 0.1867 33 1 4.0772 -0.0069 1.6314 34 1 3.7867 -1.8504 3.1486 35 1 4.7325 -2.6226 1.8392 36 1 4.1366 -4.7999 2.7126 37 1 3.9032 -4.0877 4.3388 38 1 3.5017 -6.7316 4.0027 39 1 2.3241 -5.7944 4.9801 40 1 2.2761 -9.7514 3.9354 41 1 0.2329 -4.5759 3.1938 42 1 0.8963 -4.6942 1.5394 43 1 1.2709 -2.5007 0.2716 44 1 0.6798 -2.2659 1.9404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260925101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:49 Heat of formation + Delta-G solvation = -43.776336 kcal Electronic energy + Delta-G solvation = -19273.037701 eV Core-core repulsion = 16608.951023 eV Total energy + Delta-G solvation = -2664.086677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72511 -38.41336 -35.91911 -34.26623 -31.44138 -30.45060 -29.06743 -28.10194 -27.46287 -25.61698 -22.91222 -22.35226 -21.00604 -20.78948 -19.95802 -18.54758 -17.35670 -16.63112 -16.43416 -15.67823 -15.54466 -14.91012 -14.65125 -14.27456 -14.09590 -13.93692 -13.78001 -13.44896 -13.40022 -12.95385 -12.94469 -12.74514 -12.63394 -12.39170 -12.30294 -11.85861 -11.75978 -11.64395 -11.52605 -11.46867 -11.35764 -11.31346 -11.18385 -10.99564 -10.80212 -10.43324 -9.12265 -8.09964 -6.20139 1.41064 1.42835 1.50448 2.44320 3.10259 3.20173 3.63363 3.72656 3.86054 4.02425 4.05573 4.25103 4.37174 4.41018 4.46324 4.53445 4.58331 4.67908 4.77997 4.85399 4.85921 4.88636 4.95139 4.97749 5.03924 5.04128 5.09929 5.11761 5.15852 5.23160 5.29036 5.31577 5.38012 5.41986 5.48892 5.50196 5.59444 5.64569 5.92733 6.00356 6.22412 6.29701 6.42658 6.90867 7.46887 8.98858 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.004547 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.056054 B = 6157.018857 C = 6722.523329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.096 4.096 5 H 0.073 0.927 6 C -0.113 4.113 7 C 0.039 3.961 8 N -0.538 5.538 9 C 0.091 3.909 10 H 0.037 0.963 11 C -0.106 4.106 12 C -0.093 4.093 13 C 0.044 3.956 14 H -0.006 1.006 15 C -0.535 4.535 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.097 4.097 24 C 0.048 3.952 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 19.811 -5.081 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.200 4.200 4 C -0.116 4.116 5 H 0.092 0.908 6 C -0.151 4.151 7 C -0.088 4.088 8 N -0.263 5.263 9 C -0.017 4.017 10 H 0.055 0.945 11 C -0.144 4.144 12 C -0.131 4.131 13 C 0.025 3.975 14 H 0.012 0.988 15 C -0.573 4.573 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.135 4.135 24 C -0.079 4.079 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.676 19.284 -5.426 20.103 hybrid contribution -0.902 -0.721 1.066 1.572 sum 0.774 18.563 -4.360 19.084 Atomic orbital electron populations 1.21872 0.95207 1.01548 1.02041 1.21051 0.95737 0.96639 0.96600 1.21806 1.01323 0.94837 1.01984 1.22416 0.95674 0.94467 0.99011 0.90822 1.22732 0.95135 0.96889 1.00333 1.23062 0.94498 0.92926 0.98355 1.63681 1.06926 1.25395 1.30301 1.22315 0.95233 0.94089 0.90070 0.94548 1.22377 0.96791 0.95819 0.99407 1.22252 0.97945 0.94836 0.98092 1.19413 0.93434 0.91284 0.93333 0.98819 1.21569 0.96055 0.97263 1.42391 0.93043 1.25781 0.97556 0.99301 0.96071 1.70095 1.20877 1.15953 1.48983 0.85687 0.79530 0.77853 0.79041 1.19681 1.20915 1.19504 1.22143 0.96551 0.95370 0.99411 1.22863 0.93053 0.91937 1.00076 0.93450 0.92684 0.91846 0.91381 0.92147 0.92097 0.92669 0.90578 0.89213 0.93761 0.90720 0.92019 0.91589 0.94312 0.94627 0.93121 0.93555 0.93140 0.91384 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.96 71.98 0.65 -1.91 16 2 C -0.08 -1.40 2.31 -10.79 -0.02 -1.42 16 3 C -0.14 -1.94 9.04 71.98 0.65 -1.29 16 4 C -0.10 -1.97 2.48 -9.61 -0.02 -2.00 16 5 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 6 C -0.11 -2.21 5.69 31.98 0.18 -2.03 16 7 C 0.04 0.99 5.77 86.77 0.50 1.49 16 8 N -0.54 -17.17 4.92 -856.17 -4.21 -21.38 16 9 C 0.09 3.37 2.19 45.64 0.10 3.47 16 10 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 11 C -0.11 -4.13 5.57 31.67 0.18 -3.95 16 12 C -0.09 -4.54 5.77 32.01 0.18 -4.36 16 13 C 0.04 2.34 2.72 -10.34 -0.03 2.31 16 14 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 15 C -0.53 -30.74 8.47 25.60 0.22 -30.52 16 16 H 0.05 2.89 7.55 -2.91 -0.02 2.87 16 17 C 0.01 0.66 5.35 84.65 0.45 1.12 16 18 N -0.92 -55.32 12.30 21.45 0.26 -55.05 16 19 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.10 -4.24 5.40 31.32 0.17 -4.07 16 24 C 0.05 1.33 4.57 86.65 0.40 1.72 16 25 H 0.05 0.92 7.06 -2.39 -0.02 0.91 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 29 H 0.06 0.77 7.49 -2.38 -0.02 0.75 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.48 8.03 -2.39 -0.02 1.46 16 33 H 0.09 1.39 8.12 -2.38 -0.02 1.38 16 34 H 0.04 1.11 7.79 -2.39 -0.02 1.09 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 37 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.04 2.07 7.57 -2.39 -0.02 2.06 16 39 H 0.03 1.77 8.06 -2.39 -0.02 1.75 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.05 2.02 7.66 -2.39 -0.02 2.01 16 42 H 0.05 2.19 7.38 -2.38 -0.02 2.17 16 43 H 0.07 1.93 7.48 -2.38 -0.02 1.91 16 44 H 0.04 1.27 7.23 -2.39 -0.02 1.26 16 Total: -1.00 -62.19 331.43 2.59 -59.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.92 Total: 11.46 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 3.60 Total: -41.44 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.95 Total: -76.43 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.19 2.59 -59.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.821 kcal (2) G-P(sol) polarization free energy of solvation -62.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds