Wall clock time and date at job start Mon Mar 30 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46881 * 2 1 4 4 C 1.53001 * 109.47398 * 120.00013 * 2 1 3 5 5 H 1.09001 * 110.87338 * 302.38895 * 4 2 1 6 6 C 1.55147 * 110.99129 * 178.54911 * 4 2 1 7 7 C 1.54315 * 103.01815 * 206.21846 * 6 4 2 8 8 N 1.47448 * 107.23144 * 22.27899 * 7 6 4 9 9 C 1.46905 * 110.99405 * 123.25856 * 8 7 6 10 10 H 1.08998 * 110.54208 * 301.83365 * 9 8 7 11 11 C 1.54268 * 110.48533 * 64.44464 * 9 8 7 12 12 C 1.53879 * 106.59789 * 142.28718 * 11 9 8 13 13 C 1.54266 * 106.63871 * 359.97403 * 12 11 9 14 14 H 1.09003 * 110.48843 * 95.09411 * 13 12 11 15 15 C 1.50701 * 110.48580 * 217.73489 * 13 12 11 16 16 H 1.08002 * 119.99607 * 118.54781 * 15 13 12 17 17 C 1.37872 * 120.00275 * 298.54491 * 15 13 12 18 18 N 1.31516 * 119.99907 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00173 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47240 * 60.00531 * 19 17 15 21 21 H 1.48504 * 109.47430 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47429 * 300.00183 * 19 17 15 23 23 C 1.54893 * 110.48496 * 179.21627 * 9 8 7 24 24 C 1.47839 * 108.56990 * 0.99535 * 8 7 6 25 25 H 1.09006 * 109.47080 * 299.99525 * 1 2 3 26 26 H 1.08999 * 109.47661 * 60.00071 * 1 2 3 27 27 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47337 * 240.00581 * 2 1 3 29 29 H 1.08999 * 109.46997 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47162 * 299.99897 * 3 2 1 31 31 H 1.09006 * 109.46876 * 60.00350 * 3 2 1 32 32 H 1.08997 * 110.70516 * 87.83345 * 6 4 2 33 33 H 1.09001 * 110.70522 * 324.59963 * 6 4 2 34 34 H 1.09003 * 109.88506 * 262.87903 * 7 6 4 35 35 H 1.09000 * 110.02447 * 141.76182 * 7 6 4 36 36 H 1.08997 * 110.03517 * 23.00858 * 11 9 8 37 37 H 1.08995 * 110.07269 * 261.58884 * 11 9 8 38 38 H 1.08996 * 110.03106 * 119.28302 * 12 11 9 39 39 H 1.08999 * 110.03284 * 240.66561 * 12 11 9 40 40 H 0.97003 * 120.00142 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.75924 * 321.69986 * 23 9 8 42 42 H 1.09006 * 110.74917 * 85.06643 * 23 9 8 43 43 H 1.08994 * 110.37917 * 94.72943 * 24 8 7 44 44 H 1.09004 * 110.37431 * 217.07256 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6551 -0.2505 2.1539 6 6 3.5905 -0.7736 1.2666 7 6 3.8865 -2.0268 2.1171 8 7 2.6861 -2.8816 2.0677 9 6 3.0149 -4.2221 1.5646 10 1 3.4602 -4.1594 0.5717 11 6 3.9676 -4.9457 2.5387 12 6 3.5391 -6.4235 2.5560 13 6 2.3407 -6.5473 1.5926 14 1 2.6766 -6.8605 0.6040 15 6 1.3240 -7.5173 2.1373 16 1 0.3237 -7.1798 2.3652 17 6 1.6709 -8.8354 2.3447 18 7 2.8891 -9.2463 2.0676 19 14 0.4109 -10.0375 3.0206 20 1 -0.7477 -10.1130 2.0948 21 1 1.0291 -11.3815 3.1510 22 1 -0.0502 -9.5739 4.3540 23 6 1.7501 -5.1158 1.5362 24 6 1.6765 -2.2265 1.2092 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 4.0010 0.1187 1.7392 33 1 3.9835 -0.8916 0.2568 34 1 4.0922 -1.7356 3.1472 35 1 4.7413 -2.5637 1.7058 36 1 3.8755 -4.5187 3.5373 37 1 4.9963 -4.8593 2.1892 38 1 4.3597 -7.0542 2.2141 39 1 3.2401 -6.7138 3.5632 40 1 3.1332 -10.1736 2.2138 41 1 1.1215 -4.9233 2.4055 42 1 1.1911 -4.9644 0.6127 43 1 1.7419 -2.6056 0.1894 44 1 0.6758 -2.3860 1.6108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260925725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:57 Heat of formation + Delta-G solvation = -30.355306 kcal Electronic energy + Delta-G solvation = -19252.590570 eV Core-core repulsion = 16589.085872 eV Total energy + Delta-G solvation = -2663.504698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47421 -36.96119 -34.74777 -32.33101 -30.10990 -28.98535 -27.70351 -27.06569 -26.07385 -23.71577 -21.90177 -21.13340 -19.84589 -19.07233 -18.59680 -16.38701 -15.81929 -15.28189 -14.98629 -14.47811 -14.22326 -13.70761 -13.38630 -13.15166 -12.93013 -12.60078 -12.35037 -12.27508 -12.14656 -11.79620 -11.56396 -11.36611 -10.98881 -10.94925 -10.76698 -10.54872 -10.48130 -10.47520 -10.43927 -10.00807 -9.96337 -9.85983 -9.41797 -9.01054 -8.63862 -8.30387 -7.88430 -5.93431 -3.95630 3.36887 3.41133 3.44084 4.27090 4.50382 4.55931 4.70386 4.81544 4.99712 5.20201 5.28891 5.38348 5.43312 5.51323 5.53114 5.65430 5.68591 5.72117 5.72746 5.82350 5.85927 5.87867 6.02614 6.06002 6.09080 6.11643 6.17668 6.29500 6.40164 6.42243 6.61434 6.67724 6.89858 6.91823 7.09161 7.29956 7.37691 7.48648 7.67744 7.81623 8.00296 8.11018 8.55333 9.06850 9.67801 11.16301 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036511 B = 0.004555 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.701796 B = 6145.051112 C = 6696.931265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.093 4.093 5 H 0.081 0.919 6 C -0.136 4.136 7 C 0.042 3.958 8 N -0.522 5.522 9 C 0.074 3.926 10 H 0.034 0.966 11 C -0.116 4.116 12 C -0.092 4.092 13 C 0.049 3.951 14 H 0.025 0.975 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.104 4.104 24 C 0.052 3.948 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.259 0.741 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 18.368 -3.015 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.112 4.112 5 H 0.099 0.901 6 C -0.174 4.174 7 C -0.086 4.086 8 N -0.246 5.246 9 C -0.034 4.034 10 H 0.052 0.948 11 C -0.154 4.154 12 C -0.131 4.131 13 C 0.031 3.969 14 H 0.043 0.957 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.142 4.142 24 C -0.076 4.076 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.258 18.117 -2.501 18.291 hybrid contribution -0.203 -0.691 -0.437 0.843 sum 0.055 17.426 -2.938 17.672 Atomic orbital electron populations 1.21851 0.95109 1.02150 1.01428 1.21082 0.95864 0.95946 0.97662 1.21841 1.01002 0.96001 1.01449 1.22389 0.94985 0.95738 0.98059 0.90101 1.22835 0.95960 0.98474 1.00124 1.22779 0.93259 0.92795 0.99808 1.63712 1.08789 1.02351 1.49770 1.22799 0.97940 0.87315 0.95345 0.94817 1.22291 0.96316 0.98373 0.98464 1.22012 0.99376 0.90737 1.00967 1.19420 0.92827 0.89562 0.95137 0.95724 1.21126 0.97369 0.93609 1.42809 0.92750 1.24974 0.95180 0.98230 0.95610 1.69971 1.18037 1.16338 1.48636 0.86720 0.81711 0.80293 0.79613 1.20374 1.21421 1.20304 1.22629 0.95022 0.96758 0.99796 1.23010 0.96982 0.91878 0.95684 0.92715 0.92987 0.92241 0.91377 0.92683 0.92994 0.92776 0.91284 0.91810 0.91143 0.92902 0.92264 0.94163 0.92900 0.92961 0.93150 0.91628 0.94105 0.93811 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.04 37.15 0.34 -1.04 16 2 C -0.09 -0.84 2.43 -90.62 -0.22 -1.06 16 3 C -0.15 -1.21 8.99 37.16 0.33 -0.88 16 4 C -0.09 -1.05 2.56 -88.48 -0.23 -1.28 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.14 -1.52 5.35 -24.91 -0.13 -1.65 16 7 C 0.04 0.57 6.40 -2.83 -0.02 0.55 16 8 N -0.52 -8.51 4.99 -221.31 -1.10 -9.61 16 9 C 0.07 1.39 2.10 -66.05 -0.14 1.25 16 10 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.12 -2.31 5.57 -25.61 -0.14 -2.45 16 12 C -0.09 -2.23 5.40 -25.61 -0.14 -2.37 16 13 C 0.05 1.26 2.80 -90.07 -0.25 1.01 16 14 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 15 C -0.51 -14.33 8.40 -34.44 -0.29 -14.62 16 16 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 17 C 0.06 1.73 5.33 -17.82 -0.09 1.64 16 18 N -0.89 -26.07 12.35 55.43 0.68 -25.38 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.10 -2.24 5.10 -24.70 -0.13 -2.36 16 24 C 0.05 0.74 4.59 -2.30 -0.01 0.73 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.05 0.45 7.32 -51.93 -0.38 0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.75 7.21 -51.93 -0.37 0.37 16 36 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 37 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.05 1.35 7.94 -51.93 -0.41 0.94 16 39 H 0.05 1.35 7.83 -51.93 -0.41 0.94 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 44 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -28.46 333.53 -10.17 -38.63 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.64 Total: -2.79 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.12 Total: -22.52 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.42 Total: -35.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.46 -10.17 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.279 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds