Wall clock time and date at job start Mon Mar 30 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46881 * 2 1 4 4 C 1.53001 * 109.47398 * 120.00013 * 2 1 3 5 5 H 1.09001 * 110.87338 * 302.38895 * 4 2 1 6 6 C 1.55147 * 110.99129 * 178.54911 * 4 2 1 7 7 C 1.54315 * 103.01815 * 206.21846 * 6 4 2 8 8 N 1.47448 * 107.23144 * 22.27899 * 7 6 4 9 9 C 1.46905 * 110.99405 * 123.25856 * 8 7 6 10 10 H 1.08998 * 110.54208 * 301.83365 * 9 8 7 11 11 C 1.54268 * 110.48533 * 64.44464 * 9 8 7 12 12 C 1.53879 * 106.59789 * 142.28718 * 11 9 8 13 13 C 1.54266 * 106.63871 * 359.97403 * 12 11 9 14 14 H 1.09003 * 110.48843 * 95.09411 * 13 12 11 15 15 C 1.50701 * 110.48580 * 217.73489 * 13 12 11 16 16 H 1.08002 * 119.99607 * 118.54781 * 15 13 12 17 17 C 1.37872 * 120.00275 * 298.54491 * 15 13 12 18 18 N 1.31516 * 119.99907 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00173 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47240 * 60.00531 * 19 17 15 21 21 H 1.48504 * 109.47430 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47429 * 300.00183 * 19 17 15 23 23 C 1.54893 * 110.48496 * 179.21627 * 9 8 7 24 24 C 1.47839 * 108.56990 * 0.99535 * 8 7 6 25 25 H 1.09006 * 109.47080 * 299.99525 * 1 2 3 26 26 H 1.08999 * 109.47661 * 60.00071 * 1 2 3 27 27 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47337 * 240.00581 * 2 1 3 29 29 H 1.08999 * 109.46997 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47162 * 299.99897 * 3 2 1 31 31 H 1.09006 * 109.46876 * 60.00350 * 3 2 1 32 32 H 1.08997 * 110.70516 * 87.83345 * 6 4 2 33 33 H 1.09001 * 110.70522 * 324.59963 * 6 4 2 34 34 H 1.09003 * 109.88506 * 262.87903 * 7 6 4 35 35 H 1.09000 * 110.02447 * 141.76182 * 7 6 4 36 36 H 1.08997 * 110.03517 * 23.00858 * 11 9 8 37 37 H 1.08995 * 110.07269 * 261.58884 * 11 9 8 38 38 H 1.08996 * 110.03106 * 119.28302 * 12 11 9 39 39 H 1.08999 * 110.03284 * 240.66561 * 12 11 9 40 40 H 0.97003 * 120.00142 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.75924 * 321.69986 * 23 9 8 42 42 H 1.09006 * 110.74917 * 85.06643 * 23 9 8 43 43 H 1.08994 * 110.37917 * 94.72943 * 24 8 7 44 44 H 1.09004 * 110.37431 * 217.07256 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6551 -0.2505 2.1539 6 6 3.5905 -0.7736 1.2666 7 6 3.8865 -2.0268 2.1171 8 7 2.6861 -2.8816 2.0677 9 6 3.0149 -4.2221 1.5646 10 1 3.4602 -4.1594 0.5717 11 6 3.9676 -4.9457 2.5387 12 6 3.5391 -6.4235 2.5560 13 6 2.3407 -6.5473 1.5926 14 1 2.6766 -6.8605 0.6040 15 6 1.3240 -7.5173 2.1373 16 1 0.3237 -7.1798 2.3652 17 6 1.6709 -8.8354 2.3447 18 7 2.8891 -9.2463 2.0676 19 14 0.4109 -10.0375 3.0206 20 1 -0.7477 -10.1130 2.0948 21 1 1.0291 -11.3815 3.1510 22 1 -0.0502 -9.5739 4.3540 23 6 1.7501 -5.1158 1.5362 24 6 1.6765 -2.2265 1.2092 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 4.0010 0.1187 1.7392 33 1 3.9835 -0.8916 0.2568 34 1 4.0922 -1.7356 3.1472 35 1 4.7413 -2.5637 1.7058 36 1 3.8755 -4.5187 3.5373 37 1 4.9963 -4.8593 2.1892 38 1 4.3597 -7.0542 2.2141 39 1 3.2401 -6.7138 3.5632 40 1 3.1332 -10.1736 2.2138 41 1 1.1215 -4.9233 2.4055 42 1 1.1911 -4.9644 0.6127 43 1 1.7419 -2.6056 0.1894 44 1 0.6758 -2.3860 1.6108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260925725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:56 Heat of formation + Delta-G solvation = -45.278158 kcal Electronic energy + Delta-G solvation = -19253.237673 eV Core-core repulsion = 16589.085872 eV Total energy + Delta-G solvation = -2664.151801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67644 -38.44026 -35.96451 -34.28292 -31.40803 -30.42186 -29.10758 -28.12461 -27.50440 -25.60551 -22.93333 -22.34854 -20.92341 -20.78627 -20.13887 -18.30249 -17.14530 -16.64364 -16.43787 -16.30541 -15.28874 -14.96309 -14.43892 -14.31165 -14.13352 -13.99560 -13.95196 -13.71282 -13.04092 -12.99300 -12.93461 -12.84653 -12.62247 -12.35975 -12.33572 -11.83732 -11.75118 -11.69262 -11.59309 -11.42482 -11.35617 -11.29196 -11.25374 -10.92297 -10.74162 -10.46945 -9.16410 -8.11187 -6.21012 1.41152 1.43034 1.50537 2.44067 3.06299 3.19294 3.61853 3.77705 3.87899 4.01829 4.06318 4.20735 4.31894 4.36961 4.48178 4.51521 4.62588 4.62850 4.80394 4.85867 4.86645 4.90215 4.94773 4.97200 5.03959 5.06050 5.08720 5.11067 5.14695 5.15346 5.26022 5.31919 5.36148 5.43546 5.47884 5.53017 5.59318 5.66989 5.90521 5.98625 6.19110 6.29259 6.41767 6.89189 7.46128 8.97814 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036511 B = 0.004555 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.701796 B = 6145.051112 C = 6696.931265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.083 4.083 5 H 0.083 0.917 6 C -0.127 4.127 7 C 0.037 3.963 8 N -0.534 5.534 9 C 0.088 3.912 10 H 0.035 0.965 11 C -0.104 4.104 12 C -0.083 4.083 13 C 0.039 3.961 14 H -0.005 1.005 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.092 4.092 24 C 0.049 3.951 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 20.340 -2.882 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.102 4.102 5 H 0.102 0.898 6 C -0.165 4.165 7 C -0.091 4.091 8 N -0.258 5.258 9 C -0.020 4.020 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.121 4.121 13 C 0.020 3.980 14 H 0.014 0.986 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.130 4.130 24 C -0.078 4.078 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.000 20.110 -2.371 20.249 hybrid contribution -0.132 -1.316 -0.491 1.411 sum -0.131 18.794 -2.862 19.011 Atomic orbital electron populations 1.21850 0.94923 1.01565 1.02186 1.21054 0.96023 0.96749 0.96438 1.21808 1.01236 0.94761 1.02124 1.22337 0.95209 0.93604 0.99052 0.89816 1.22801 0.95688 0.98014 0.99996 1.22873 0.91944 0.93413 1.00823 1.63638 1.10399 1.01651 1.50120 1.22505 0.95814 0.88561 0.95141 0.94744 1.22145 0.97543 0.95183 0.99372 1.21795 0.98017 0.93505 0.98822 1.19425 0.93288 0.91611 0.93672 0.98637 1.21488 0.97814 0.94691 1.43101 0.93025 1.25772 0.97104 1.00005 0.95839 1.70099 1.19730 1.16694 1.49409 0.85681 0.79343 0.77947 0.79112 1.19554 1.20904 1.19643 1.22416 0.96058 0.94940 0.99567 1.23045 0.96094 0.93938 0.94734 0.92255 0.91970 0.93507 0.91994 0.92278 0.92183 0.92299 0.89080 0.91502 0.90461 0.93213 0.91582 0.92280 0.95166 0.95432 0.93121 0.92593 0.93569 0.94557 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.04 71.98 0.65 -1.83 16 2 C -0.08 -1.43 2.43 -10.79 -0.03 -1.46 16 3 C -0.14 -1.93 8.99 71.98 0.65 -1.28 16 4 C -0.08 -1.69 2.56 -9.41 -0.02 -1.71 16 5 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.13 -2.47 5.35 31.78 0.17 -2.30 16 7 C 0.04 0.93 6.40 86.64 0.55 1.49 16 8 N -0.53 -16.67 4.99 -854.10 -4.26 -20.94 16 9 C 0.09 3.28 2.10 45.99 0.10 3.37 16 10 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 11 C -0.10 -4.10 5.57 31.32 0.17 -3.92 16 12 C -0.08 -4.11 5.40 31.32 0.17 -3.94 16 13 C 0.04 2.05 2.80 -10.44 -0.03 2.02 16 14 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 15 C -0.53 -30.63 8.40 25.60 0.22 -30.41 16 16 H 0.05 2.91 7.78 -2.91 -0.02 2.89 16 17 C 0.01 0.65 5.33 84.65 0.45 1.11 16 18 N -0.92 -55.10 12.35 21.45 0.26 -54.84 16 19 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.09 -4.00 5.10 31.91 0.16 -3.83 16 24 C 0.05 1.35 4.59 86.77 0.40 1.74 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.89 7.45 -2.38 -0.02 0.87 16 28 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 29 H 0.06 0.76 7.32 -2.39 -0.02 0.74 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.29 7.21 -2.39 -0.02 1.27 16 36 H 0.07 2.50 8.04 -2.39 -0.02 2.49 16 37 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 38 H 0.03 1.58 7.94 -2.39 -0.02 1.57 16 39 H 0.03 1.45 7.83 -2.39 -0.02 1.43 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.06 2.52 8.05 -2.39 -0.02 2.51 16 42 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 44 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 Total: -1.00 -61.72 333.53 2.55 -59.17 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.91 Total: 10.66 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.61 Total: -40.95 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -4.00 Total: -75.77 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -61.72 2.55 -59.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.896 kcal (2) G-P(sol) polarization free energy of solvation -61.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds