Wall clock time and date at job start Mon Mar 30 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.08994 * 109.45534 * 57.44947 * 3 2 1 5 5 C 1.53035 * 109.45903 * 297.47419 * 3 2 1 6 6 C 1.53117 * 109.27660 * 180.80502 * 5 3 2 7 7 C 1.53124 * 109.16176 * 57.65611 * 6 5 3 8 8 C 1.53034 * 109.27518 * 302.34323 * 7 6 5 9 9 N 1.46849 * 109.46167 * 177.42498 * 3 2 1 10 10 C 1.46905 * 110.99899 * 305.85049 * 9 3 2 11 11 H 1.09003 * 110.43329 * 53.39104 * 10 9 3 12 12 C 1.54884 * 110.59775 * 290.77288 * 10 9 3 13 13 C 1.54889 * 102.74575 * 203.32145 * 12 10 9 14 14 C 1.54375 * 104.21458 * 37.92743 * 13 12 10 15 15 C 1.53877 * 106.54362 * 336.42259 * 14 13 12 16 16 H 1.08999 * 110.02390 * 119.27599 * 15 14 13 17 17 C 1.50701 * 110.03017 * 240.64990 * 15 14 13 18 18 H 1.08005 * 119.99401 * 117.90856 * 17 15 14 19 19 C 1.37872 * 120.00411 * 297.91211 * 17 15 14 20 20 N 1.31509 * 120.00055 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00062 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46878 * 60.00156 * 21 19 17 23 23 H 1.48500 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47168 * 300.00162 * 21 19 17 25 25 H 1.09005 * 109.47017 * 185.90219 * 1 2 3 26 26 H 1.09002 * 109.47576 * 305.90479 * 1 2 3 27 27 H 1.09001 * 109.46680 * 65.90830 * 1 2 3 28 28 H 1.08998 * 109.47599 * 239.99720 * 2 1 3 29 29 H 1.09002 * 109.47252 * 119.99654 * 2 1 3 30 30 H 1.08998 * 109.50483 * 60.86775 * 5 3 2 31 31 H 1.08999 * 109.51019 * 300.74687 * 5 3 2 32 32 H 1.08998 * 109.52480 * 297.75140 * 6 5 3 33 33 H 1.09002 * 109.57540 * 177.59580 * 6 5 3 34 34 H 1.09000 * 109.50482 * 182.40313 * 7 6 5 35 35 H 1.08995 * 109.50090 * 62.28668 * 7 6 5 36 36 H 1.08991 * 109.46712 * 299.16584 * 8 7 6 37 37 H 1.08997 * 109.46050 * 179.19123 * 8 7 6 38 38 H 1.09000 * 110.76085 * 321.63590 * 12 10 9 39 39 H 1.09001 * 110.75381 * 85.01290 * 12 10 9 40 40 H 1.08998 * 110.48529 * 156.62259 * 13 12 10 41 41 H 1.09003 * 110.48848 * 279.13339 * 13 12 10 42 42 H 1.09003 * 110.06983 * 217.14869 * 14 13 12 43 43 H 1.08999 * 110.04726 * 95.68853 * 14 13 12 44 44 H 0.96995 * 120.00435 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6397 1.9691 0.8663 5 6 1.5823 2.1451 -1.2802 6 6 2.1117 3.5818 -1.2853 7 6 3.6384 3.5553 -1.1709 8 6 4.0365 2.8119 0.1062 9 7 3.5072 1.4428 0.0622 10 6 3.9857 0.6564 1.2071 11 1 3.5539 -0.3443 1.1884 12 6 3.6440 1.3695 2.5389 13 6 4.6897 0.7822 3.5190 14 6 5.9751 0.6591 2.6729 15 6 5.5263 0.5798 1.2032 16 1 5.9405 1.4166 0.6408 17 6 5.9770 -0.7235 0.5955 18 1 5.2463 -1.4313 0.2325 19 6 7.3219 -1.0125 0.5029 20 7 8.2116 -0.1510 0.9454 21 14 7.8805 -2.6284 -0.2497 22 1 7.3977 -2.7145 -1.6515 23 1 9.3638 -2.6959 -0.2326 24 1 7.3238 -3.7589 0.5358 25 1 -0.3633 -1.0223 0.1057 26 1 -0.3634 0.6027 0.8324 27 1 -0.3633 0.4195 -0.9382 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.4931 2.1586 -1.3184 31 1 1.9708 1.6111 -2.1473 32 1 1.6925 4.1275 -0.4400 33 1 1.8245 4.0736 -2.2147 34 1 4.0182 4.5762 -1.1310 35 1 4.0593 3.0434 -2.0362 36 1 3.6268 3.3320 0.9719 37 1 5.1232 2.7787 0.1833 38 1 3.7680 2.4481 2.4425 39 1 2.6321 1.1230 2.8604 40 1 4.8486 1.4594 4.3581 41 1 4.3706 -0.1972 3.8756 42 1 6.5181 -0.2455 2.9469 43 1 6.6069 1.5344 2.8237 44 1 9.1578 -0.3541 0.8800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:57 Heat of formation + Delta-G solvation = -21.319299 kcal Electronic energy + Delta-G solvation = -20244.376583 eV Core-core repulsion = 17581.263716 eV Total energy + Delta-G solvation = -2663.112867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.51895 -36.45541 -33.71794 -32.58542 -31.75889 -28.89978 -28.09282 -26.41140 -24.17359 -23.85757 -22.87255 -20.49659 -20.21298 -18.87307 -18.09704 -16.36450 -15.70018 -14.74883 -14.69769 -14.25846 -14.05110 -13.83661 -13.41973 -13.22440 -13.06006 -12.53963 -12.25112 -12.04781 -11.66848 -11.49023 -11.27201 -11.04536 -10.92586 -10.80066 -10.64380 -10.53161 -10.38019 -10.35216 -10.07674 -9.95807 -9.83981 -9.49500 -9.44196 -9.03755 -8.52119 -8.23718 -7.38669 -5.89160 -3.89145 3.39199 3.43382 3.46655 4.48237 4.54828 5.06498 5.08251 5.22666 5.37251 5.43858 5.46838 5.60406 5.64210 5.70275 5.70856 5.77939 5.88076 5.94951 5.96372 6.00253 6.16108 6.20036 6.22651 6.29288 6.33389 6.43354 6.47447 6.49789 6.57944 6.59933 6.63790 6.76052 6.80862 6.84424 7.05143 7.30382 7.38427 7.76787 7.81909 7.95707 8.07374 8.25840 8.60553 9.12277 9.72513 11.20587 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.007225 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.446946 B = 3874.273332 C = 3967.546777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.088 3.912 4 H 0.030 0.970 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.515 5.515 10 C 0.085 3.915 11 H 0.083 0.917 12 C -0.160 4.160 13 C -0.123 4.123 14 C -0.094 4.094 15 C 0.055 3.945 16 H 0.037 0.963 17 C -0.496 4.496 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.279 1.279 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.370 5.264 -0.906 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.021 4.021 4 H 0.048 0.952 5 C -0.149 4.149 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.238 5.238 10 C -0.022 4.022 11 H 0.101 0.899 12 C -0.199 4.199 13 C -0.161 4.161 14 C -0.133 4.133 15 C 0.036 3.964 16 H 0.055 0.945 17 C -0.535 4.535 18 H 0.071 0.929 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.714 3.286 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.205 1.205 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.989 5.064 -1.339 13.083 hybrid contribution 0.133 -0.488 0.419 0.657 sum -11.856 4.576 -0.920 12.741 Atomic orbital electron populations 1.21794 0.96413 1.01124 1.01296 1.21658 0.94571 0.96578 1.03177 1.21549 0.89083 0.95343 0.96125 0.95176 1.21656 0.99199 0.95467 0.98567 1.21568 0.96478 0.96832 1.00759 1.21592 0.95200 0.99337 0.99307 1.22144 1.01487 0.88629 0.95384 1.62006 1.06283 1.12139 1.43361 1.22945 0.99278 0.95437 0.84568 0.89875 1.23161 0.97654 1.00144 0.98952 1.22369 0.97626 0.98969 0.97138 1.22104 0.93817 1.00632 0.96699 1.19330 0.87133 0.97686 0.92237 0.94473 1.21149 0.91330 1.02471 1.38530 0.92881 1.24936 0.96964 0.96514 0.95762 1.69966 1.00973 1.35124 1.47231 0.86763 0.77273 0.84619 0.79928 1.20393 1.21563 1.20511 0.93028 0.93267 0.92836 0.91127 0.91388 0.92254 0.91260 0.92903 0.92558 0.92370 0.91160 0.95659 0.89433 0.92172 0.93741 0.93929 0.92881 0.91822 0.94553 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.45 37.16 0.35 -1.40 16 2 C -0.12 -1.81 5.12 -26.73 -0.14 -1.95 16 3 C 0.09 1.36 1.69 -67.72 -0.11 1.25 16 4 H 0.03 0.48 7.62 -51.93 -0.40 0.08 16 5 C -0.11 -1.51 5.06 -26.65 -0.13 -1.64 16 6 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 7 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 8 C 0.05 0.90 4.68 -3.83 -0.02 0.88 16 9 N -0.52 -9.60 4.52 -216.80 -0.98 -10.58 16 10 C 0.09 1.75 2.07 -66.06 -0.14 1.61 16 11 H 0.08 1.78 5.39 -51.93 -0.28 1.50 16 12 C -0.16 -2.94 5.46 -24.74 -0.14 -3.07 16 13 C -0.12 -2.39 6.83 -25.01 -0.17 -2.56 16 14 C -0.09 -2.21 5.59 -25.55 -0.14 -2.35 16 15 C 0.05 1.34 2.34 -90.66 -0.21 1.13 16 16 H 0.04 1.00 5.67 -51.93 -0.29 0.71 16 17 C -0.50 -13.60 8.33 -34.44 -0.29 -13.89 16 18 H 0.05 1.46 7.55 -52.48 -0.40 1.06 16 19 C 0.06 1.64 5.08 -17.82 -0.09 1.55 16 20 N -0.89 -25.88 12.38 55.43 0.69 -25.20 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.58 6.82 -51.93 -0.35 0.22 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.09 6.04 -51.93 -0.31 0.78 16 30 H 0.06 0.70 6.67 -51.93 -0.35 0.35 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.43 6.24 -51.93 -0.32 0.11 16 37 H 0.09 1.76 5.80 -51.93 -0.30 1.45 16 38 H 0.06 1.09 5.76 -51.93 -0.30 0.79 16 39 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.66 7.21 -51.93 -0.37 1.28 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -27.88 318.30 -9.95 -37.84 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.89 Total: 0.49 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -1.55 Total: -24.01 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.29 Total: -35.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.88 -9.95 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.517 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds