Wall clock time and date at job start Mon Mar 30 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 H 1.08994 * 109.45534 * 57.44947 * 3 2 1 5 5 C 1.53035 * 109.45903 * 297.47419 * 3 2 1 6 6 C 1.53117 * 109.27660 * 180.80502 * 5 3 2 7 7 C 1.53124 * 109.16176 * 57.65611 * 6 5 3 8 8 C 1.53034 * 109.27518 * 302.34323 * 7 6 5 9 9 N 1.46849 * 109.46167 * 177.42498 * 3 2 1 10 10 C 1.46905 * 110.99899 * 305.85049 * 9 3 2 11 11 H 1.09003 * 110.43329 * 53.39104 * 10 9 3 12 12 C 1.54884 * 110.59775 * 290.77288 * 10 9 3 13 13 C 1.54889 * 102.74575 * 203.32145 * 12 10 9 14 14 C 1.54375 * 104.21458 * 37.92743 * 13 12 10 15 15 C 1.53877 * 106.54362 * 336.42259 * 14 13 12 16 16 H 1.08999 * 110.02390 * 119.27599 * 15 14 13 17 17 C 1.50701 * 110.03017 * 240.64990 * 15 14 13 18 18 H 1.08005 * 119.99401 * 117.90856 * 17 15 14 19 19 C 1.37872 * 120.00411 * 297.91211 * 17 15 14 20 20 N 1.31509 * 120.00055 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 120.00062 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46878 * 60.00156 * 21 19 17 23 23 H 1.48500 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47168 * 300.00162 * 21 19 17 25 25 H 1.09005 * 109.47017 * 185.90219 * 1 2 3 26 26 H 1.09002 * 109.47576 * 305.90479 * 1 2 3 27 27 H 1.09001 * 109.46680 * 65.90830 * 1 2 3 28 28 H 1.08998 * 109.47599 * 239.99720 * 2 1 3 29 29 H 1.09002 * 109.47252 * 119.99654 * 2 1 3 30 30 H 1.08998 * 109.50483 * 60.86775 * 5 3 2 31 31 H 1.08999 * 109.51019 * 300.74687 * 5 3 2 32 32 H 1.08998 * 109.52480 * 297.75140 * 6 5 3 33 33 H 1.09002 * 109.57540 * 177.59580 * 6 5 3 34 34 H 1.09000 * 109.50482 * 182.40313 * 7 6 5 35 35 H 1.08995 * 109.50090 * 62.28668 * 7 6 5 36 36 H 1.08991 * 109.46712 * 299.16584 * 8 7 6 37 37 H 1.08997 * 109.46050 * 179.19123 * 8 7 6 38 38 H 1.09000 * 110.76085 * 321.63590 * 12 10 9 39 39 H 1.09001 * 110.75381 * 85.01290 * 12 10 9 40 40 H 1.08998 * 110.48529 * 156.62259 * 13 12 10 41 41 H 1.09003 * 110.48848 * 279.13339 * 13 12 10 42 42 H 1.09003 * 110.06983 * 217.14869 * 14 13 12 43 43 H 1.08999 * 110.04726 * 95.68853 * 14 13 12 44 44 H 0.96995 * 120.00435 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6397 1.9691 0.8663 5 6 1.5823 2.1451 -1.2802 6 6 2.1117 3.5818 -1.2853 7 6 3.6384 3.5553 -1.1709 8 6 4.0365 2.8119 0.1062 9 7 3.5072 1.4428 0.0622 10 6 3.9857 0.6564 1.2071 11 1 3.5539 -0.3443 1.1884 12 6 3.6440 1.3695 2.5389 13 6 4.6897 0.7822 3.5190 14 6 5.9751 0.6591 2.6729 15 6 5.5263 0.5798 1.2032 16 1 5.9405 1.4166 0.6408 17 6 5.9770 -0.7235 0.5955 18 1 5.2463 -1.4313 0.2325 19 6 7.3219 -1.0125 0.5029 20 7 8.2116 -0.1510 0.9454 21 14 7.8805 -2.6284 -0.2497 22 1 7.3977 -2.7145 -1.6515 23 1 9.3638 -2.6959 -0.2326 24 1 7.3238 -3.7589 0.5358 25 1 -0.3633 -1.0223 0.1057 26 1 -0.3634 0.6027 0.8324 27 1 -0.3633 0.4195 -0.9382 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.4931 2.1586 -1.3184 31 1 1.9708 1.6111 -2.1473 32 1 1.6925 4.1275 -0.4400 33 1 1.8245 4.0736 -2.2147 34 1 4.0182 4.5762 -1.1310 35 1 4.0593 3.0434 -2.0362 36 1 3.6268 3.3320 0.9719 37 1 5.1232 2.7787 0.1833 38 1 3.7680 2.4481 2.4425 39 1 2.6321 1.1230 2.8604 40 1 4.8486 1.4594 4.3581 41 1 4.3706 -0.1972 3.8756 42 1 6.5181 -0.2455 2.9469 43 1 6.6069 1.5344 2.8237 44 1 9.1578 -0.3541 0.8800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260951273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:57 Heat of formation + Delta-G solvation = -36.199390 kcal Electronic energy + Delta-G solvation = -20245.021832 eV Core-core repulsion = 17581.263716 eV Total energy + Delta-G solvation = -2663.758116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94160 -38.00740 -34.86789 -34.55696 -33.25596 -30.10865 -29.94158 -28.00303 -25.95969 -25.12579 -24.32191 -21.76308 -21.58780 -20.55539 -19.59651 -18.31755 -17.23267 -16.68232 -15.95465 -15.80759 -15.46773 -15.08082 -14.89683 -14.57540 -14.28977 -14.02603 -13.71542 -13.56655 -13.38544 -12.89865 -12.65760 -12.51434 -12.44096 -12.38300 -12.33096 -11.97966 -11.83664 -11.70068 -11.62077 -11.40839 -11.35260 -11.21644 -10.86736 -10.72174 -10.51334 -10.35994 -8.82329 -8.05784 -6.11881 1.40506 1.42045 1.49080 2.46597 3.10971 3.28463 3.89609 3.94607 4.02058 4.06680 4.15500 4.24785 4.30432 4.40786 4.49799 4.52597 4.61660 4.68267 4.79005 4.87147 4.88519 4.94469 4.95546 5.05302 5.07434 5.11261 5.12368 5.16069 5.22547 5.24256 5.28271 5.36477 5.42081 5.47760 5.51816 5.59640 5.61103 5.72990 5.92533 6.02317 6.49624 6.51932 6.63483 6.98405 7.52877 9.03092 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.007225 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.446946 B = 3874.273332 C = 3967.546777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.088 3.912 4 H 0.037 0.963 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.113 4.113 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.095 3.905 11 H 0.072 0.928 12 C -0.147 4.147 13 C -0.114 4.114 14 C -0.089 4.089 15 C 0.050 3.950 16 H 0.006 0.994 17 C -0.510 4.510 18 H 0.046 0.954 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.945 3.055 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 5.731 -0.974 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.020 4.020 4 H 0.054 0.946 5 C -0.146 4.146 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.074 4.074 9 N -0.258 5.258 10 C -0.013 4.013 11 H 0.090 0.910 12 C -0.186 4.186 13 C -0.152 4.152 14 C -0.127 4.127 15 C 0.032 3.968 16 H 0.024 0.976 17 C -0.548 4.548 18 H 0.064 0.936 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.611 5.529 -1.411 15.685 hybrid contribution 0.982 -0.629 0.416 1.238 sum -13.629 4.900 -0.994 14.517 Atomic orbital electron populations 1.21732 0.93596 1.02062 1.02418 1.21635 0.96978 0.95796 1.01493 1.21669 0.86735 0.96115 0.97525 0.94550 1.21661 1.00775 0.95436 0.96695 1.21549 0.94381 0.96685 1.02428 1.21574 0.97165 0.99506 0.96889 1.22081 0.99266 0.88644 0.97389 1.61938 1.08717 1.12546 1.42628 1.22609 0.96111 0.95825 0.86753 0.91026 1.23046 0.98491 1.00010 0.97032 1.22297 0.95398 1.00190 0.97359 1.21915 0.95474 0.98148 0.97197 1.19277 0.90332 0.95148 0.92073 0.97599 1.21492 0.91463 1.03511 1.38375 0.93612 1.25664 0.97181 0.99632 0.96348 1.70093 1.01022 1.36785 1.48395 0.85810 0.76853 0.81028 0.79144 1.20078 1.21204 1.19664 0.92265 0.92282 0.91506 0.92903 0.93055 0.89524 0.92602 0.91715 0.90360 0.90681 0.92887 0.94741 0.93153 0.91718 0.91211 0.91614 0.92150 0.95071 0.96205 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.45 71.98 0.68 -2.19 16 2 C -0.12 -3.42 5.12 30.60 0.16 -3.27 16 3 C 0.09 2.55 1.69 44.94 0.08 2.63 16 4 H 0.04 1.04 7.62 -2.39 -0.02 1.02 16 5 C -0.11 -2.63 5.06 30.65 0.15 -2.48 16 6 C -0.11 -2.57 6.00 30.67 0.18 -2.38 16 7 C -0.11 -3.23 6.09 30.65 0.19 -3.04 16 8 C 0.05 1.89 4.68 86.32 0.40 2.30 16 9 N -0.54 -19.92 4.52 -839.82 -3.79 -23.71 16 10 C 0.10 3.93 2.07 45.98 0.10 4.02 16 11 H 0.07 3.11 5.39 -2.39 -0.01 3.10 16 12 C -0.15 -5.16 5.46 31.88 0.17 -4.99 16 13 C -0.11 -4.33 6.83 31.71 0.22 -4.12 16 14 C -0.09 -4.32 5.59 31.36 0.18 -4.14 16 15 C 0.05 2.57 2.34 -10.82 -0.03 2.54 16 16 H 0.01 0.35 5.67 -2.39 -0.01 0.33 16 17 C -0.51 -28.98 8.33 25.60 0.21 -28.76 16 18 H 0.05 2.60 7.55 -2.91 -0.02 2.57 16 19 C 0.01 0.54 5.08 84.65 0.43 0.97 16 20 N -0.92 -55.47 12.38 21.44 0.27 -55.21 16 21 Si 0.95 45.46 29.54 68.60 2.03 47.48 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.20 6.82 -2.39 -0.02 1.18 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.60 6.04 -2.39 -0.01 1.59 16 30 H 0.09 1.67 6.67 -2.39 -0.02 1.65 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.03 1.13 6.24 -2.39 -0.01 1.12 16 37 H 0.05 2.13 5.80 -2.39 -0.01 2.11 16 38 H 0.06 2.23 5.76 -2.39 -0.01 2.21 16 39 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.03 1.67 7.21 -2.39 -0.02 1.66 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -62.32 318.30 2.57 -59.76 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.94 Total: 14.59 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.12 Total: -42.91 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.53 Total: -78.92 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -62.32 2.57 -59.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.557 kcal (2) G-P(sol) polarization free energy of solvation -62.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds