Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47202 * 2 1 4 4 H 1.08996 * 109.46311 * 57.40429 * 3 2 1 5 5 C 1.53037 * 109.46165 * 297.43708 * 3 2 1 6 6 C 1.53122 * 109.28116 * 180.80303 * 5 3 2 7 7 C 1.53124 * 109.15697 * 57.65504 * 6 5 3 8 8 C 1.53045 * 109.27648 * 302.34776 * 7 6 5 9 9 N 1.46837 * 109.52351 * 59.18121 * 8 7 6 10 10 C 1.46900 * 110.99966 * 174.16189 * 9 8 7 11 11 H 1.08995 * 110.01721 * 338.35212 * 10 9 8 12 12 C 1.54269 * 110.03538 * 99.74727 * 10 9 8 13 13 C 1.54891 * 104.19513 * 142.89739 * 12 10 9 14 14 C 1.54899 * 102.74729 * 322.05608 * 13 12 10 15 15 C 1.53879 * 110.03238 * 216.91443 * 10 9 8 16 16 H 1.09006 * 110.03220 * 121.42692 * 15 10 9 17 17 C 1.50696 * 110.03082 * 359.97438 * 15 10 9 18 18 H 1.07996 * 120.00335 * 3.85199 * 17 15 10 19 19 C 1.37884 * 120.00054 * 183.84948 * 17 15 10 20 20 N 1.31516 * 119.99825 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00153 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46817 * 90.00366 * 21 19 17 23 23 H 1.48495 * 109.47124 * 210.00207 * 21 19 17 24 24 H 1.48501 * 109.47454 * 330.00541 * 21 19 17 25 25 H 1.08997 * 109.47305 * 295.11645 * 1 2 3 26 26 H 1.09006 * 109.46920 * 55.11773 * 1 2 3 27 27 H 1.09003 * 109.47184 * 175.11236 * 1 2 3 28 28 H 1.09004 * 109.46931 * 239.99656 * 2 1 3 29 29 H 1.09003 * 109.46962 * 119.99923 * 2 1 3 30 30 H 1.09000 * 109.50705 * 300.74775 * 5 3 2 31 31 H 1.09010 * 109.50521 * 60.82400 * 5 3 2 32 32 H 1.09004 * 109.52086 * 297.75261 * 6 5 3 33 33 H 1.08999 * 109.52540 * 177.56014 * 6 5 3 34 34 H 1.09002 * 109.49974 * 182.40702 * 7 6 5 35 35 H 1.09000 * 109.50295 * 62.28513 * 7 6 5 36 36 H 1.09000 * 109.45553 * 179.19761 * 8 7 6 37 37 H 1.09003 * 109.46065 * 299.17213 * 8 7 6 38 38 H 1.08993 * 110.48581 * 261.57382 * 12 10 9 39 39 H 1.08997 * 110.48343 * 24.21800 * 12 10 9 40 40 H 1.08992 * 110.75865 * 80.36807 * 13 12 10 41 41 H 1.08994 * 110.75431 * 203.56228 * 13 12 10 42 42 H 1.09002 * 110.48107 * 156.62061 * 14 13 12 43 43 H 1.09003 * 110.48532 * 279.13295 * 14 13 12 44 44 H 0.96994 * 119.99947 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9694 0.8658 5 6 1.5831 2.1448 -1.2806 6 6 2.1125 3.5816 -1.2857 7 6 3.6392 3.5550 -1.1703 8 6 4.0364 2.8117 0.1072 9 7 3.5071 1.4428 0.0631 10 6 3.9848 0.6566 1.2084 11 1 4.8931 1.1021 1.6140 12 6 2.8946 0.5942 2.2982 13 6 3.0153 -0.8385 2.8745 14 6 3.3221 -1.6883 1.6163 15 6 4.2566 -0.7947 0.7750 16 1 5.2971 -1.0541 0.9704 17 6 3.9483 -0.9620 -0.6906 18 1 3.6520 -0.1076 -1.2811 19 6 4.0444 -2.2058 -1.2778 20 7 4.4048 -3.2463 -0.5586 21 14 3.6616 -2.4133 -3.0943 22 1 4.9020 -2.2176 -3.8870 23 1 3.1304 -3.7789 -3.3353 24 1 2.6482 -1.4084 -3.5046 25 1 -0.3634 0.4362 0.9305 26 1 -0.3633 0.5878 -0.8431 27 1 -0.3634 -1.0239 -0.0876 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9722 1.6106 -2.1474 31 1 0.4938 2.1576 -1.3199 32 1 1.6928 4.1274 -0.4407 33 1 1.8261 4.0721 -2.2160 34 1 4.0189 4.5760 -1.1304 35 1 4.0607 3.0429 -2.0353 36 1 5.1232 2.7786 0.1850 37 1 3.6260 3.3320 0.9726 38 1 3.0880 1.3349 3.0740 39 1 1.9084 0.7475 1.8603 40 1 3.8346 -0.8990 3.5907 41 1 2.0777 -1.1497 3.3350 42 1 3.8274 -2.6131 1.8947 43 1 2.4045 -1.9056 1.0696 44 1 4.4721 -4.1214 -0.9716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = 25.324293 kcal Electronic energy + Delta-G solvation = -21142.645296 eV Core-core repulsion = 18481.555046 eV Total energy + Delta-G solvation = -2661.090249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07455 -36.36648 -33.22165 -32.43681 -31.79165 -28.68378 -28.09443 -26.29845 -24.42585 -23.29805 -22.60310 -20.40792 -20.07341 -18.90708 -18.11796 -16.07007 -15.33749 -15.14188 -14.50294 -14.25630 -13.83830 -13.63374 -13.06306 -12.92008 -12.71144 -12.46025 -12.23350 -11.98891 -11.49779 -11.17774 -10.97049 -10.79391 -10.74610 -10.69862 -10.54353 -10.39094 -10.25482 -9.98903 -9.93737 -9.73880 -9.49618 -9.46851 -8.99680 -8.72723 -8.44386 -8.12182 -7.07296 -5.76387 -3.67265 3.43217 3.50564 3.53461 4.59545 4.68179 5.21692 5.28895 5.33175 5.48980 5.67521 5.70076 5.72501 5.79192 5.86320 5.90269 5.95119 6.03642 6.11439 6.14884 6.22042 6.26812 6.30995 6.40406 6.43959 6.48556 6.55581 6.60550 6.67535 6.72852 6.74006 6.84598 6.87227 7.06759 7.22150 7.29779 7.43631 7.69627 7.82955 7.99631 8.13409 8.17101 8.29417 8.82176 9.40361 9.89229 11.34938 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.011291 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.575766 B = 2479.279243 C = 3016.712035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.165 4.165 3 C 0.100 3.900 4 H 0.025 0.975 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.115 4.115 8 C 0.054 3.946 9 N -0.496 5.496 10 C 0.088 3.912 11 H 0.051 0.949 12 C -0.173 4.173 13 C -0.132 4.132 14 C -0.100 4.100 15 C 0.052 3.948 16 H 0.022 0.978 17 C -0.472 4.472 18 H 0.093 0.907 19 C 0.048 3.952 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.275 1.275 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 10.018 2.396 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C -0.008 4.008 4 H 0.042 0.958 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.075 4.075 9 N -0.219 5.219 10 C -0.020 4.020 11 H 0.069 0.931 12 C -0.211 4.211 13 C -0.170 4.170 14 C -0.138 4.138 15 C 0.033 3.967 16 H 0.040 0.960 17 C -0.511 4.511 18 H 0.111 0.889 19 C -0.151 4.151 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.200 1.200 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.798 9.628 1.931 10.929 hybrid contribution -0.415 0.213 -0.208 0.511 sum -5.214 9.841 1.723 11.269 Atomic orbital electron populations 1.21928 0.98686 1.00676 0.99910 1.22985 0.92261 0.95821 1.09091 1.21493 0.87873 0.96767 0.94701 0.95784 1.21725 0.99308 0.94797 0.99477 1.21571 0.96101 0.97407 1.00536 1.21562 0.95736 0.98835 0.99128 1.22120 0.99488 0.90248 0.95624 1.62181 1.07838 1.09354 1.42530 1.22474 0.94557 0.97851 0.87164 0.93099 1.23530 1.02282 0.97017 0.98305 1.22596 0.99308 0.95940 0.99199 1.22491 1.00602 0.97900 0.92763 1.19313 0.94919 0.86538 0.95887 0.96003 1.21566 1.41778 0.93895 0.93815 0.88935 1.25012 0.96769 0.96635 0.96663 1.69998 1.50031 0.99339 1.35033 0.86827 0.78368 0.76845 0.87290 1.21311 1.22018 1.19972 0.94512 0.93652 0.93328 0.87526 0.86833 0.91038 0.92267 0.93084 0.92722 0.92733 0.91048 0.91489 0.96593 0.94443 0.88817 0.93129 0.93587 0.92589 0.91439 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.74 37.16 0.36 -2.15 16 2 C -0.17 -3.18 2.61 -26.73 -0.07 -3.25 16 3 C 0.10 1.77 1.11 -67.72 -0.08 1.70 16 4 H 0.02 0.43 6.52 -51.93 -0.34 0.09 16 5 C -0.12 -1.85 5.06 -26.65 -0.13 -1.99 16 6 C -0.12 -1.66 6.00 -26.60 -0.16 -1.82 16 7 C -0.11 -1.67 6.09 -26.64 -0.16 -1.83 16 8 C 0.05 0.88 5.30 -3.84 -0.02 0.86 16 9 N -0.50 -9.47 2.43 -217.43 -0.53 -10.00 16 10 C 0.09 1.77 3.00 -66.59 -0.20 1.57 16 11 H 0.05 1.01 7.58 -51.93 -0.39 0.62 16 12 C -0.17 -3.14 5.34 -25.07 -0.13 -3.27 16 13 C -0.13 -2.48 6.64 -24.73 -0.16 -2.64 16 14 C -0.10 -2.25 4.55 -25.07 -0.11 -2.37 16 15 C 0.05 1.25 2.67 -90.66 -0.24 1.01 16 16 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 17 C -0.47 -12.08 5.05 -34.44 -0.17 -12.26 16 18 H 0.09 2.38 5.05 -52.49 -0.26 2.11 16 19 C 0.05 1.29 5.31 -17.82 -0.09 1.19 16 20 N -0.90 -25.70 12.15 55.43 0.67 -25.02 16 21 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.68 6.28 -51.93 -0.33 0.36 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.11 2.41 5.44 -51.93 -0.28 2.13 16 29 H 0.11 2.30 1.44 -51.93 -0.07 2.23 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.87 6.43 -51.92 -0.33 0.53 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.69 3.43 -51.93 -0.18 1.51 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.38 7.85 -51.93 -0.41 0.97 16 43 H 0.07 1.60 5.76 -51.93 -0.30 1.31 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -26.74 303.67 -9.20 -35.94 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.52 Total: 3.36 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.38 Total: -25.26 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.15 Total: -35.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.74 -9.20 -35.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.264 kcal (2) G-P(sol) polarization free energy of solvation -26.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds