Wall clock time and date at job start Mon Mar 30 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47202 * 2 1 4 4 H 1.08996 * 109.46311 * 57.40429 * 3 2 1 5 5 C 1.53037 * 109.46165 * 297.43708 * 3 2 1 6 6 C 1.53122 * 109.28116 * 180.80303 * 5 3 2 7 7 C 1.53124 * 109.15697 * 57.65504 * 6 5 3 8 8 C 1.53045 * 109.27648 * 302.34776 * 7 6 5 9 9 N 1.46837 * 109.52351 * 59.18121 * 8 7 6 10 10 C 1.46900 * 110.99966 * 174.16189 * 9 8 7 11 11 H 1.08995 * 110.01721 * 338.35212 * 10 9 8 12 12 C 1.54269 * 110.03538 * 99.74727 * 10 9 8 13 13 C 1.54891 * 104.19513 * 142.89739 * 12 10 9 14 14 C 1.54899 * 102.74729 * 322.05608 * 13 12 10 15 15 C 1.53879 * 110.03238 * 216.91443 * 10 9 8 16 16 H 1.09006 * 110.03220 * 121.42692 * 15 10 9 17 17 C 1.50696 * 110.03082 * 359.97438 * 15 10 9 18 18 H 1.07996 * 120.00335 * 3.85199 * 17 15 10 19 19 C 1.37884 * 120.00054 * 183.84948 * 17 15 10 20 20 N 1.31516 * 119.99825 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00153 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46817 * 90.00366 * 21 19 17 23 23 H 1.48495 * 109.47124 * 210.00207 * 21 19 17 24 24 H 1.48501 * 109.47454 * 330.00541 * 21 19 17 25 25 H 1.08997 * 109.47305 * 295.11645 * 1 2 3 26 26 H 1.09006 * 109.46920 * 55.11773 * 1 2 3 27 27 H 1.09003 * 109.47184 * 175.11236 * 1 2 3 28 28 H 1.09004 * 109.46931 * 239.99656 * 2 1 3 29 29 H 1.09003 * 109.46962 * 119.99923 * 2 1 3 30 30 H 1.09000 * 109.50705 * 300.74775 * 5 3 2 31 31 H 1.09010 * 109.50521 * 60.82400 * 5 3 2 32 32 H 1.09004 * 109.52086 * 297.75261 * 6 5 3 33 33 H 1.08999 * 109.52540 * 177.56014 * 6 5 3 34 34 H 1.09002 * 109.49974 * 182.40702 * 7 6 5 35 35 H 1.09000 * 109.50295 * 62.28513 * 7 6 5 36 36 H 1.09000 * 109.45553 * 179.19761 * 8 7 6 37 37 H 1.09003 * 109.46065 * 299.17213 * 8 7 6 38 38 H 1.08993 * 110.48581 * 261.57382 * 12 10 9 39 39 H 1.08997 * 110.48343 * 24.21800 * 12 10 9 40 40 H 1.08992 * 110.75865 * 80.36807 * 13 12 10 41 41 H 1.08994 * 110.75431 * 203.56228 * 13 12 10 42 42 H 1.09002 * 110.48107 * 156.62061 * 14 13 12 43 43 H 1.09003 * 110.48532 * 279.13295 * 14 13 12 44 44 H 0.96994 * 119.99947 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9694 0.8658 5 6 1.5831 2.1448 -1.2806 6 6 2.1125 3.5816 -1.2857 7 6 3.6392 3.5550 -1.1703 8 6 4.0364 2.8117 0.1072 9 7 3.5071 1.4428 0.0631 10 6 3.9848 0.6566 1.2084 11 1 4.8931 1.1021 1.6140 12 6 2.8946 0.5942 2.2982 13 6 3.0153 -0.8385 2.8745 14 6 3.3221 -1.6883 1.6163 15 6 4.2566 -0.7947 0.7750 16 1 5.2971 -1.0541 0.9704 17 6 3.9483 -0.9620 -0.6906 18 1 3.6520 -0.1076 -1.2811 19 6 4.0444 -2.2058 -1.2778 20 7 4.4048 -3.2463 -0.5586 21 14 3.6616 -2.4133 -3.0943 22 1 4.9020 -2.2176 -3.8870 23 1 3.1304 -3.7789 -3.3353 24 1 2.6482 -1.4084 -3.5046 25 1 -0.3634 0.4362 0.9305 26 1 -0.3633 0.5878 -0.8431 27 1 -0.3634 -1.0239 -0.0876 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9722 1.6106 -2.1474 31 1 0.4938 2.1576 -1.3199 32 1 1.6928 4.1274 -0.4407 33 1 1.8261 4.0721 -2.2160 34 1 4.0189 4.5760 -1.1304 35 1 4.0607 3.0429 -2.0353 36 1 5.1232 2.7786 0.1850 37 1 3.6260 3.3320 0.9726 38 1 3.0880 1.3349 3.0740 39 1 1.9084 0.7475 1.8603 40 1 3.8346 -0.8990 3.5907 41 1 2.0777 -1.1497 3.3350 42 1 3.8274 -2.6131 1.8947 43 1 2.4045 -1.9056 1.0696 44 1 4.4721 -4.1214 -0.9716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260951277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:04 Heat of formation + Delta-G solvation = 12.502873 kcal Electronic energy + Delta-G solvation = -21143.201274 eV Core-core repulsion = 18481.555046 eV Total energy + Delta-G solvation = -2661.646228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57842 -37.82712 -34.61183 -34.37635 -33.25370 -30.01075 -29.91682 -27.84177 -26.10555 -24.89272 -23.97200 -21.79262 -21.58488 -20.46727 -19.74144 -17.78855 -16.98153 -16.80020 -16.15467 -15.88203 -15.13948 -15.07021 -14.58336 -14.23848 -14.17020 -13.99580 -13.73277 -13.41641 -13.22692 -12.81885 -12.71026 -12.40833 -12.39652 -12.18840 -12.05152 -11.89230 -11.58879 -11.54475 -11.45204 -11.24704 -11.08909 -10.96801 -10.72833 -10.41698 -10.27627 -10.20163 -8.54883 -7.86861 -5.79977 1.43523 1.46722 1.54458 2.58915 3.24671 3.44599 3.96409 4.04479 4.08504 4.15730 4.23923 4.33702 4.40688 4.54782 4.58365 4.64709 4.71428 4.81965 4.83981 4.91490 4.93996 4.99641 5.05602 5.09915 5.14665 5.18007 5.20690 5.21936 5.28937 5.33714 5.42853 5.48365 5.51781 5.60121 5.64495 5.76347 5.92975 6.09469 6.14269 6.18798 6.52770 6.73573 6.87729 7.31723 7.78614 9.24105 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.011291 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.575766 B = 2479.279243 C = 3016.712035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.165 4.165 3 C 0.103 3.897 4 H 0.039 0.961 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.053 3.947 9 N -0.521 5.521 10 C 0.092 3.908 11 H 0.051 0.949 12 C -0.161 4.161 13 C -0.123 4.123 14 C -0.090 4.090 15 C 0.044 3.956 16 H -0.020 1.020 17 C -0.453 4.453 18 H 0.093 0.907 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.927 3.073 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.265 1.265 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.022 0.978 43 H 0.052 0.948 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 12.836 2.872 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C -0.005 4.005 4 H 0.056 0.944 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.075 4.075 9 N -0.244 5.244 10 C -0.016 4.016 11 H 0.069 0.931 12 C -0.199 4.199 13 C -0.161 4.161 14 C -0.128 4.128 15 C 0.025 3.975 16 H -0.002 1.002 17 C -0.492 4.492 18 H 0.111 0.889 19 C -0.198 4.198 20 N -0.580 5.580 21 Si 0.756 3.244 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.190 1.190 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.492 12.472 2.396 14.263 hybrid contribution 0.148 -0.651 -0.360 0.758 sum -6.344 11.821 2.036 13.570 Atomic orbital electron populations 1.21855 0.96301 1.00920 1.01553 1.22810 0.94479 0.96534 1.06336 1.21487 0.86985 0.95888 0.96131 0.94364 1.21711 1.00329 0.95827 0.97317 1.21549 0.95315 0.96006 1.02182 1.21558 0.96438 0.99767 0.97221 1.22172 0.99178 0.88913 0.97249 1.62015 1.08991 1.11150 1.42227 1.22245 0.95662 0.95386 0.88322 0.93075 1.23421 1.01634 0.96887 0.97982 1.22515 1.00634 0.95566 0.97358 1.22237 0.99067 0.96923 0.94548 1.19306 0.92758 0.89961 0.95432 1.00169 1.21810 1.39208 0.93383 0.94805 0.88914 1.25603 0.97684 0.96823 0.99671 1.70139 1.52284 0.99437 1.36173 0.86023 0.78040 0.76529 0.83817 1.21686 1.22531 1.18973 0.92470 0.92346 0.93857 0.91564 0.88157 0.93700 0.90545 0.91479 0.90964 0.90021 0.92959 0.92096 0.95120 0.91945 0.88277 0.92361 0.91458 0.95913 0.92916 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.74 71.98 0.70 -3.79 16 2 C -0.16 -6.16 2.61 30.59 0.08 -6.08 16 3 C 0.10 3.41 1.11 44.94 0.05 3.46 16 4 H 0.04 1.19 6.52 -2.39 -0.02 1.17 16 5 C -0.11 -3.36 5.06 30.65 0.16 -3.21 16 6 C -0.11 -2.72 6.00 30.68 0.18 -2.54 16 7 C -0.11 -2.93 6.09 30.65 0.19 -2.74 16 8 C 0.05 1.60 5.30 86.33 0.46 2.06 16 9 N -0.52 -19.16 2.43 -841.83 -2.04 -21.20 16 10 C 0.09 3.65 3.00 45.64 0.14 3.78 16 11 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 12 C -0.16 -5.42 5.34 31.67 0.17 -5.25 16 13 C -0.12 -4.42 6.64 31.89 0.21 -4.21 16 14 C -0.09 -4.16 4.55 31.67 0.14 -4.01 16 15 C 0.04 2.18 2.67 -10.82 -0.03 2.15 16 16 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 17 C -0.45 -23.87 5.05 25.60 0.13 -23.75 16 18 H 0.09 4.85 5.05 -2.91 -0.01 4.84 16 19 C 0.00 -0.19 5.31 84.66 0.45 0.26 16 20 N -0.94 -55.79 12.15 21.45 0.26 -55.53 16 21 Si 0.93 45.31 29.54 68.60 2.03 47.34 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.59 6.28 -2.38 -0.01 1.58 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 3.01 5.44 -2.38 -0.01 3.00 16 29 H 0.10 3.99 1.44 -2.39 0.00 3.99 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.97 6.43 -2.38 -0.02 1.96 16 32 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.89 7.94 -2.39 -0.02 1.87 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 3.25 3.43 -2.39 -0.01 3.24 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 43 H 0.05 2.58 5.76 -2.39 -0.01 2.57 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -59.72 303.67 4.23 -55.49 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.96 Total: 17.75 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.03 Total: -43.86 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.78 Total: -76.73 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -59.72 4.23 -55.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.994 kcal (2) G-P(sol) polarization free energy of solvation -59.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds