Wall clock time and date at job start Mon Mar 30 2020 07:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 H 1.08997 * 109.90575 * 304.78389 * 3 2 1 5 5 C 1.53993 * 109.91790 * 183.67797 * 3 2 1 6 6 C 1.54597 * 105.23111 * 239.17645 * 5 3 2 7 7 C 1.55108 * 102.83935 * 338.15073 * 6 5 3 8 8 N 1.47906 * 110.08182 * 65.98992 * 3 2 1 9 9 C 1.46893 * 111.00033 * 265.29069 * 8 3 2 10 10 H 1.09002 * 109.47283 * 55.01284 * 9 8 3 11 11 C 1.53001 * 109.46901 * 295.01186 * 9 8 3 12 12 C 1.53006 * 109.47242 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47039 * 59.99662 * 12 11 9 14 14 C 1.53004 * 109.47539 * 300.00594 * 13 12 11 15 15 H 1.09000 * 109.46930 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46521 * 299.99642 * 14 13 12 17 17 H 1.08009 * 119.99643 * 120.00282 * 16 14 13 18 18 C 1.37875 * 120.00716 * 299.99767 * 16 14 13 19 19 N 1.31522 * 119.99663 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00439 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46773 * 60.00574 * 20 18 16 22 22 H 1.48503 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47294 * 300.00468 * 20 18 16 24 24 C 1.52995 * 109.46948 * 59.99546 * 14 13 12 25 25 H 1.08996 * 109.47434 * 292.59936 * 1 2 3 26 26 H 1.08998 * 109.46785 * 52.60409 * 1 2 3 27 27 H 1.09003 * 109.46886 * 172.59658 * 1 2 3 28 28 H 1.08999 * 109.47721 * 239.99299 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99548 * 2 1 3 30 30 H 1.09000 * 110.30925 * 358.14029 * 5 3 2 31 31 H 1.08996 * 110.30919 * 120.20929 * 5 3 2 32 32 H 1.08997 * 110.72800 * 96.44725 * 6 5 3 33 33 H 1.08992 * 110.72659 * 219.73680 * 6 5 3 34 34 H 1.08991 * 110.59507 * 278.86949 * 7 6 5 35 35 H 1.09009 * 110.82496 * 155.84767 * 7 6 5 36 36 H 1.09002 * 109.47232 * 300.00129 * 11 9 8 37 37 H 1.08999 * 109.47230 * 60.00307 * 11 9 8 38 38 H 1.09000 * 109.47150 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.46970 * 300.00115 * 12 11 9 40 40 H 1.09002 * 109.46870 * 60.00391 * 13 12 11 41 41 H 1.09001 * 109.47064 * 180.02562 * 13 12 11 42 42 H 0.96990 * 120.00266 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.46657 * 180.02562 * 24 14 13 44 44 H 1.09002 * 109.47129 * 60.00405 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9872 -0.8417 5 6 3.5771 1.4555 -0.0929 6 6 4.0545 2.1956 1.1777 7 6 2.8060 3.0207 1.5855 8 7 1.6764 2.1097 1.2689 9 6 0.4200 2.8578 1.1291 10 1 -0.3619 2.1904 0.7666 11 6 0.6161 4.0023 0.1329 12 6 -0.6924 4.7820 -0.0123 13 6 -1.0991 5.3534 1.3474 14 6 -1.2951 4.2089 2.3438 15 1 -1.5853 4.6161 3.3123 16 6 -2.3765 3.2867 1.8427 17 1 -2.1528 2.2482 1.6474 18 6 -3.6514 3.7683 1.6337 19 7 -3.9236 5.0330 1.8712 20 14 -4.9915 2.6253 1.0120 21 1 -5.1820 1.5140 1.9786 22 1 -6.2617 3.3818 0.8719 23 1 -4.5966 2.0711 -0.3078 24 6 0.0133 3.4294 2.4888 25 1 -0.3634 0.3949 0.9487 26 1 -0.3633 0.6241 -0.8164 27 1 -0.3633 -1.0191 -0.1324 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9640 0.4365 -0.1049 31 1 3.8976 1.9917 -0.9860 32 1 4.3200 1.4856 1.9609 33 1 4.8945 2.8516 0.9493 34 1 2.7406 3.9344 0.9949 35 1 2.8260 3.2531 2.6504 36 1 1.3980 4.6697 0.4954 37 1 0.9062 3.5952 -0.8357 38 1 -0.5528 5.5971 -0.7224 39 1 -1.4745 4.1148 -0.3747 40 1 -0.3169 6.0206 1.7098 41 1 -2.0315 5.9085 1.2441 42 1 -4.8203 5.3720 1.7239 43 1 -0.1265 2.6138 3.1983 44 1 0.7955 4.0965 2.8512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:14 Heat of formation + Delta-G solvation = -19.100238 kcal Electronic energy + Delta-G solvation = -20417.873101 eV Core-core repulsion = 17754.856459 eV Total energy + Delta-G solvation = -2663.016642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72849 -36.74097 -33.03560 -32.69152 -31.11452 -29.73975 -27.63095 -27.04546 -24.85578 -23.23703 -21.56392 -21.16797 -20.46960 -19.22406 -18.27089 -16.06076 -15.59791 -15.07754 -14.76596 -14.49177 -13.91761 -13.33915 -13.20979 -13.00212 -12.80425 -12.51776 -12.32796 -12.01352 -11.64528 -11.31235 -11.22628 -11.11094 -10.98077 -10.84055 -10.78969 -10.61038 -10.52504 -10.42429 -10.29167 -9.89375 -9.67980 -9.51813 -9.12250 -8.99225 -8.56044 -8.19607 -7.73695 -5.91748 -3.95939 3.34216 3.39245 3.42083 4.41319 4.48483 4.82690 4.91203 5.14066 5.33759 5.38917 5.49199 5.59356 5.63701 5.71874 5.76088 5.87036 5.92823 5.95813 6.05402 6.06617 6.20560 6.25302 6.27723 6.32833 6.37387 6.51287 6.55372 6.62559 6.64701 6.71557 6.80543 6.85368 6.92713 7.07405 7.23747 7.46063 7.55058 7.57014 7.75939 7.81433 8.00627 8.22387 8.54344 9.06498 9.67067 11.14154 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.007559 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.274764 B = 3703.393960 C = 4326.306436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.059 3.941 4 H 0.055 0.945 5 C -0.126 4.126 6 C -0.123 4.123 7 C 0.027 3.973 8 N -0.507 5.507 9 C 0.079 3.921 10 H 0.101 0.899 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.108 4.108 14 C 0.045 3.955 15 H 0.025 0.975 16 C -0.500 4.500 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.091 4.091 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.011 0.989 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.051 0.949 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -5.119 -3.981 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.050 4.050 4 H 0.073 0.927 5 C -0.164 4.164 6 C -0.161 4.161 7 C -0.101 4.101 8 N -0.230 5.230 9 C -0.029 4.029 10 H 0.119 0.881 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.146 4.146 14 C 0.026 3.974 15 H 0.043 0.957 16 C -0.538 4.538 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.710 3.290 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.129 4.129 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.030 0.970 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.243 -5.387 -3.567 13.843 hybrid contribution -0.727 0.097 -1.095 1.318 sum 11.516 -5.290 -4.662 13.503 Atomic orbital electron populations 1.21886 0.95609 1.00707 1.03091 1.21473 0.96315 0.95316 1.00926 1.22449 0.93988 0.95775 0.92760 0.92722 1.22439 0.95427 1.00684 0.97878 1.22487 0.97283 0.98818 0.97489 1.23318 0.90216 0.95313 1.01206 1.64974 1.02586 1.26762 1.28690 1.22040 0.90574 0.93696 0.96567 0.88120 1.22161 0.98988 0.98684 0.98330 1.21301 0.95907 0.97976 0.98384 1.21519 1.00031 0.98573 0.94484 1.18680 0.90631 0.92807 0.95247 0.95708 1.21117 0.93751 0.95513 1.43397 0.92722 1.24927 0.98331 0.94837 0.95795 1.69861 1.20476 1.13280 1.49498 0.86818 0.81603 0.81110 0.79449 1.20356 1.21471 1.20389 1.21522 0.98193 0.98540 0.94608 0.90945 0.93117 0.93616 0.92797 0.91667 0.91443 0.92164 0.91243 0.91846 0.93068 0.90524 0.93027 0.93956 0.95221 0.91246 0.97036 0.89232 0.93165 0.93057 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.54 37.16 0.32 -2.05 16 2 C -0.10 -1.39 5.40 -26.73 -0.14 -1.53 16 3 C 0.06 0.85 2.38 -66.64 -0.16 0.69 16 4 H 0.05 0.84 5.82 -51.93 -0.30 0.54 16 5 C -0.13 -1.50 6.56 -25.37 -0.17 -1.67 16 6 C -0.12 -1.46 7.08 -24.78 -0.18 -1.64 16 7 C 0.03 0.40 5.49 -1.80 -0.01 0.39 16 8 N -0.51 -8.25 4.77 -214.56 -1.02 -9.28 16 9 C 0.08 1.49 1.64 -67.72 -0.11 1.37 16 10 H 0.10 2.10 3.73 -51.93 -0.19 1.90 16 11 C -0.14 -2.64 4.48 -26.73 -0.12 -2.76 16 12 C -0.10 -2.06 5.70 -26.73 -0.15 -2.22 16 13 C -0.11 -2.54 5.24 -26.73 -0.14 -2.68 16 14 C 0.05 1.11 2.59 -91.77 -0.24 0.87 16 15 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.50 -13.18 6.61 -34.44 -0.23 -13.40 16 17 H 0.05 1.44 6.71 -52.48 -0.35 1.08 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 20 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.09 -1.90 4.71 -26.74 -0.13 -2.03 16 25 H 0.07 1.27 6.48 -51.93 -0.34 0.93 16 26 H 0.05 0.79 8.04 -51.93 -0.42 0.37 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.77 5.38 -51.93 -0.28 0.49 16 35 H 0.08 1.13 7.71 -51.92 -0.40 0.73 16 36 H 0.05 0.92 5.94 -51.93 -0.31 0.62 16 37 H 0.04 0.73 6.24 -51.93 -0.32 0.41 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.61 7.22 -51.93 -0.37 1.24 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.62 7.15 -51.93 -0.37 0.24 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -26.76 312.58 -9.99 -36.75 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.74 Total: 1.34 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.55 Total: -25.08 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.40 Total: -33.86 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.76 -9.99 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -26.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds