Wall clock time and date at job start Mon Mar 30 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46947 * 2 1 4 4 C 1.52991 * 109.47136 * 120.00370 * 2 1 3 5 5 H 1.09002 * 110.37212 * 59.66852 * 4 2 1 6 6 C 1.54381 * 110.41152 * 297.19302 * 4 2 1 7 7 C 1.54261 * 105.06399 * 217.36973 * 6 4 2 8 8 C 1.54387 * 105.05650 * 0.02562 * 7 6 4 9 9 N 1.48559 * 104.59634 * 23.85169 * 8 7 6 10 10 C 1.46901 * 111.00132 * 200.96053 * 9 8 7 11 11 H 1.09002 * 110.43281 * 65.64811 * 10 9 8 12 12 C 1.54259 * 110.48737 * 188.19449 * 10 9 8 13 13 C 1.53873 * 106.59910 * 142.28604 * 12 10 9 14 14 C 1.54267 * 106.59958 * 0.02562 * 13 12 10 15 15 H 1.08997 * 110.48791 * 95.19520 * 14 13 12 16 16 C 1.50695 * 110.48639 * 217.71305 * 14 13 12 17 17 H 1.08003 * 120.00337 * 118.81909 * 16 14 13 18 18 C 1.37881 * 119.99926 * 298.54373 * 16 14 13 19 19 N 1.31513 * 119.99833 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00064 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47220 * 60.00026 * 20 18 16 22 22 H 1.48501 * 109.47033 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47158 * 300.00143 * 20 18 16 24 24 C 1.54893 * 104.19401 * 336.38664 * 14 13 12 25 25 H 1.08997 * 109.46669 * 299.99724 * 1 2 3 26 26 H 1.08996 * 109.47171 * 59.99809 * 1 2 3 27 27 H 1.08993 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46669 * 240.00276 * 2 1 3 29 29 H 1.09004 * 109.47004 * 173.34969 * 3 2 1 30 30 H 1.08995 * 109.47631 * 293.34617 * 3 2 1 31 31 H 1.08996 * 109.46999 * 53.35210 * 3 2 1 32 32 H 1.08997 * 110.32483 * 336.26654 * 6 4 2 33 33 H 1.09003 * 110.32376 * 98.37160 * 6 4 2 34 34 H 1.08999 * 110.32834 * 118.89432 * 7 6 4 35 35 H 1.09000 * 110.32693 * 241.10824 * 7 6 4 36 36 H 1.09006 * 110.40903 * 265.07190 * 8 7 6 37 37 H 1.08999 * 110.40896 * 142.63329 * 8 7 6 38 38 H 1.09009 * 110.03045 * 23.00217 * 12 10 9 39 39 H 1.08998 * 110.07112 * 261.59440 * 12 10 9 40 40 H 1.09001 * 110.03580 * 240.71769 * 13 12 10 41 41 H 1.09003 * 110.03294 * 119.28539 * 13 12 10 42 42 H 0.96997 * 119.99958 * 180.02562 * 19 18 16 43 43 H 1.08995 * 110.75367 * 156.25779 * 24 14 13 44 44 H 1.08999 * 110.75899 * 279.63115 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6800 -1.7500 1.2669 6 6 1.5961 0.0292 2.5231 7 6 2.7868 -0.0938 3.4962 8 6 3.8502 -0.9076 2.7280 9 7 3.5249 -0.6902 1.2949 10 6 4.0995 -1.7517 0.4576 11 1 3.6324 -2.7100 0.6844 12 6 3.9326 -1.4100 -1.0374 13 6 5.2152 -1.8846 -1.7427 14 6 6.1165 -2.4987 -0.6517 15 1 5.9787 -3.5790 -0.6065 16 6 7.5625 -2.1631 -0.9116 17 1 8.1225 -1.5902 -0.1873 18 6 8.1721 -2.5923 -2.0714 19 7 7.4915 -3.2941 -2.9511 20 14 9.9646 -2.1769 -2.3933 21 1 10.8072 -2.7490 -1.3124 22 1 10.3789 -2.7504 -3.6990 23 1 10.1332 -0.7018 -2.4241 24 6 5.6328 -1.8323 0.6602 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1236 1.4448 0.1190 30 1 1.7772 1.9209 -0.9434 31 1 1.5828 1.9895 0.8245 32 1 1.3994 1.0769 2.2962 33 1 0.7081 -0.4387 2.9481 34 1 3.1745 0.8936 3.7469 35 1 2.4843 -0.6231 4.3998 36 1 3.7737 -1.9657 2.9789 37 1 4.8495 -0.5343 2.9519 38 1 3.8136 -0.3338 -1.1634 39 1 3.0670 -1.9315 -1.4459 40 1 5.7187 -1.0388 -2.2109 41 1 4.9722 -2.6370 -2.4929 42 1 7.9204 -3.5964 -3.7669 43 1 5.8766 -2.4537 1.5218 44 1 6.0607 -0.8357 0.7679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:09 Heat of formation + Delta-G solvation = -35.512515 kcal Electronic energy + Delta-G solvation = -19844.431872 eV Core-core repulsion = 17180.703541 eV Total energy + Delta-G solvation = -2663.728331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86696 -38.16047 -35.52737 -34.56325 -32.08603 -29.97029 -28.67030 -27.99008 -27.76123 -25.65720 -23.64225 -22.12257 -20.72107 -20.65442 -19.71825 -18.33034 -17.15634 -16.84756 -16.45120 -16.09969 -15.28710 -15.06901 -14.72942 -14.24432 -14.20030 -14.04305 -13.63952 -13.30046 -13.13178 -12.97546 -12.83310 -12.68713 -12.46304 -12.32446 -12.20850 -11.94140 -11.82059 -11.68216 -11.60718 -11.44496 -11.34597 -11.12493 -11.00112 -10.84890 -10.71474 -10.45174 -9.30203 -8.11311 -6.21107 1.40746 1.42507 1.50055 2.43736 3.07861 3.19289 3.71960 3.75911 4.01562 4.08157 4.15288 4.25197 4.31518 4.38442 4.44311 4.57527 4.66337 4.71197 4.75776 4.86584 4.90725 4.95397 4.96748 5.04017 5.08596 5.08917 5.12610 5.16515 5.20828 5.23453 5.31023 5.38436 5.39764 5.44171 5.50741 5.61988 5.67147 5.71411 5.90968 5.98848 6.12767 6.29617 6.41502 6.89421 7.46067 8.97733 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.005474 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.195982 B = 5113.933281 C = 5542.717520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.134 4.134 4 C 0.065 3.935 5 H 0.038 0.962 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.029 3.971 9 N -0.501 5.501 10 C 0.082 3.918 11 H 0.032 0.968 12 C -0.100 4.100 13 C -0.083 4.083 14 C 0.039 3.961 15 H -0.007 1.007 16 C -0.532 4.532 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.090 4.090 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.046 0.954 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 7.453 10.053 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.191 4.191 4 C -0.044 4.044 5 H 0.056 0.944 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.099 4.099 9 N -0.225 5.225 10 C -0.026 4.026 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.122 4.122 14 C 0.020 3.980 15 H 0.011 0.989 16 C -0.570 4.570 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.128 4.128 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.932 7.864 9.679 18.699 hybrid contribution 1.030 -1.170 -0.434 1.618 sum -12.902 6.694 9.245 17.226 Atomic orbital electron populations 1.21799 0.93877 1.01679 1.02446 1.21199 0.96014 0.96965 0.96969 1.21719 1.01408 0.95069 1.00937 1.22739 0.87517 0.97544 0.96570 0.94436 1.22416 0.97833 1.01656 0.93457 1.22271 0.94700 1.00573 0.97929 1.23092 1.00196 0.98355 0.88272 1.65436 1.08004 1.42924 1.06160 1.22486 0.94932 0.91524 0.93707 0.95003 1.22228 0.96733 1.00971 0.93847 1.21816 0.94536 0.97913 0.97924 1.19402 0.93783 0.93270 0.91514 0.98858 1.21489 0.97130 1.34104 1.04250 0.93016 1.25771 1.01961 0.94915 0.96067 1.70099 1.37935 1.37835 1.10145 0.85691 0.80473 0.78663 0.77322 1.19575 1.20942 1.19604 1.22387 0.93425 0.99642 0.97375 0.91446 0.92234 0.93062 0.92074 0.93157 0.93409 0.91785 0.89824 0.90298 0.90712 0.90161 0.94709 0.90980 0.90977 0.92715 0.95487 0.95405 0.93142 0.93552 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.00 71.98 0.65 -1.93 16 2 C -0.09 -2.20 2.24 -10.79 -0.02 -2.23 16 3 C -0.13 -3.14 8.36 71.98 0.60 -2.53 16 4 C 0.06 1.61 2.06 45.05 0.09 1.70 16 5 H 0.04 1.00 7.84 -2.39 -0.02 0.98 16 6 C -0.12 -2.22 5.35 31.49 0.17 -2.05 16 7 C -0.12 -2.31 7.00 31.49 0.22 -2.09 16 8 C 0.03 0.77 5.67 86.45 0.49 1.26 16 9 N -0.50 -15.17 4.00 -825.48 -3.30 -18.47 16 10 C 0.08 3.03 2.38 45.98 0.11 3.14 16 11 H 0.03 1.19 7.92 -2.39 -0.02 1.18 16 12 C -0.10 -3.90 4.58 31.32 0.14 -3.76 16 13 C -0.08 -4.13 5.40 31.32 0.17 -3.96 16 14 C 0.04 2.06 2.79 -10.47 -0.03 2.03 16 15 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 16 C -0.53 -30.46 8.40 25.60 0.22 -30.24 16 17 H 0.05 2.91 7.77 -2.91 -0.02 2.88 16 18 C 0.01 0.65 5.33 84.66 0.45 1.11 16 19 N -0.92 -55.27 12.35 21.45 0.26 -55.00 16 20 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.09 -3.88 4.89 31.88 0.16 -3.73 16 25 H 0.07 1.05 7.29 -2.39 -0.02 1.03 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.71 4.96 -2.39 -0.01 1.70 16 29 H 0.05 1.43 7.09 -2.38 -0.02 1.41 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.27 6.27 -2.39 -0.01 1.25 16 32 H 0.08 1.50 5.62 -2.39 -0.01 1.49 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.03 0.95 8.00 -2.38 -0.02 0.93 16 37 H 0.07 2.02 7.99 -2.39 -0.02 2.00 16 38 H 0.07 2.72 6.43 -2.38 -0.02 2.70 16 39 H 0.05 1.98 7.39 -2.39 -0.02 1.96 16 40 H 0.03 1.42 7.83 -2.39 -0.02 1.40 16 41 H 0.03 1.46 7.94 -2.39 -0.02 1.44 16 42 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 44 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 Total: -1.00 -61.61 322.46 3.33 -58.27 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.93 Total: 11.62 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 3.41 Total: -43.29 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -3.04 Total: -73.47 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -61.61 3.33 -58.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.762 kcal (2) G-P(sol) polarization free energy of solvation -61.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds