Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.53000 * 109.47365 * 120.00350 * 2 1 3 5 5 H 1.08993 * 110.36474 * 61.31963 * 4 2 1 6 6 C 1.54380 * 110.40817 * 298.84265 * 4 2 1 7 7 C 1.54260 * 105.05912 * 217.36783 * 6 4 2 8 8 C 1.54370 * 105.06033 * 359.97438 * 7 6 4 9 9 N 1.48563 * 104.59845 * 23.85759 * 8 7 6 10 10 C 1.46894 * 111.00189 * 200.96216 * 9 8 7 11 11 H 1.08994 * 110.44310 * 65.63799 * 10 9 8 12 12 C 1.54273 * 110.48394 * 302.95425 * 10 9 8 13 13 C 1.54088 * 106.62036 * 217.60555 * 12 10 9 14 14 C 1.54266 * 106.49562 * 0.17109 * 13 12 10 15 15 H 1.08995 * 110.48653 * 264.71064 * 14 13 12 16 16 C 1.50702 * 110.48401 * 142.19715 * 14 13 12 17 17 H 1.08002 * 120.00069 * 243.24379 * 16 14 13 18 18 C 1.37881 * 119.99956 * 63.51897 * 16 14 13 19 19 N 1.31508 * 119.99752 * 359.72181 * 18 16 14 20 20 Si 1.86794 * 120.00008 * 179.72152 * 18 16 14 21 21 H 1.48498 * 109.46930 * 89.99735 * 20 18 16 22 22 H 1.48490 * 109.47321 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47180 * 330.00287 * 20 18 16 24 24 C 1.54890 * 110.48473 * 188.18453 * 10 9 8 25 25 H 1.08995 * 109.47042 * 59.99933 * 1 2 3 26 26 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47185 * 299.99846 * 1 2 3 28 28 H 1.09007 * 109.46859 * 240.00291 * 2 1 3 29 29 H 1.08993 * 109.47312 * 183.38237 * 3 2 1 30 30 H 1.09002 * 109.46739 * 303.38741 * 3 2 1 31 31 H 1.09001 * 109.46631 * 63.38458 * 3 2 1 32 32 H 1.08997 * 110.32383 * 336.26872 * 6 4 2 33 33 H 1.09008 * 110.32031 * 98.37052 * 6 4 2 34 34 H 1.08996 * 110.32291 * 118.90445 * 7 6 4 35 35 H 1.09004 * 110.32235 * 241.00327 * 7 6 4 36 36 H 1.08995 * 110.41688 * 265.07431 * 8 7 6 37 37 H 1.09006 * 110.40891 * 142.63043 * 8 7 6 38 38 H 1.09001 * 110.02874 * 336.99984 * 12 10 9 39 39 H 1.08995 * 110.02877 * 98.37997 * 12 10 9 40 40 H 1.09000 * 110.15498 * 240.87487 * 13 12 10 41 41 H 1.08998 * 110.00695 * 119.38536 * 13 12 10 42 42 H 0.97004 * 120.00165 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.75729 * 38.29908 * 24 10 9 44 44 H 1.09004 * 110.75364 * 274.92555 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7042 -1.7582 1.2522 6 6 1.5615 0.0061 2.5240 7 6 2.7415 -0.0984 3.5120 8 6 3.8335 -0.8807 2.7513 9 7 3.5226 -0.6577 1.3158 10 6 4.1325 -1.6981 0.4772 11 1 3.6848 -2.6689 0.6892 12 6 5.6586 -1.7443 0.6988 13 6 6.2951 -2.0283 -0.6754 14 6 5.1317 -2.1399 -1.6823 15 1 4.8464 -3.1826 -1.8216 16 6 5.5141 -1.5183 -3.0009 17 1 4.9757 -0.6571 -3.3682 18 6 6.5474 -2.0526 -3.7410 19 7 7.2030 -3.1012 -3.2938 20 14 7.0163 -1.2868 -5.3791 21 1 8.0455 -0.2392 -5.1592 22 1 7.5615 -2.3356 -6.2778 23 1 5.8144 -0.6767 -6.0024 24 6 3.9771 -1.3454 -1.0230 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1283 1.4431 -0.0606 30 1 1.6279 1.9735 -0.8581 31 1 1.7271 1.9385 0.9188 32 1 1.3431 1.0511 2.3042 33 1 0.6790 -0.4867 2.9323 34 1 3.1023 0.8953 3.7773 35 1 2.4389 -0.6419 4.4071 36 1 3.7780 -1.9423 2.9918 37 1 4.8209 -0.4866 2.9920 38 1 6.0091 -0.7866 1.0835 39 1 5.9103 -2.5419 1.3977 40 1 6.8533 -2.9640 -0.6445 41 1 6.9555 -1.2083 -0.9572 42 1 7.9297 -3.4773 -3.8146 43 1 4.1041 -0.2747 -1.1832 44 1 3.0117 -1.6819 -1.4009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = -20.149541 kcal Electronic energy + Delta-G solvation = -19923.027996 eV Core-core repulsion = 17259.965853 eV Total energy + Delta-G solvation = -2663.062143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62673 -36.50558 -34.43170 -32.57704 -30.64679 -28.30644 -27.39353 -26.86006 -26.27240 -23.75974 -22.38443 -21.05703 -19.23492 -18.70644 -18.60925 -16.40651 -16.03671 -15.31359 -14.71821 -14.39411 -14.21300 -13.81278 -13.24388 -13.04488 -12.71558 -12.45962 -12.25133 -11.98121 -11.87856 -11.55470 -11.35745 -11.13761 -11.04516 -10.90519 -10.74396 -10.65717 -10.44677 -10.24362 -10.18168 -10.00975 -9.82602 -9.66111 -9.41638 -8.95532 -8.63768 -8.31026 -8.03054 -5.94023 -3.95832 3.34963 3.41510 3.44914 4.27700 4.50434 4.75790 4.85100 5.09079 5.24554 5.31780 5.38047 5.46462 5.56403 5.58226 5.69879 5.73313 5.79663 5.84687 5.90075 5.95559 6.03160 6.06031 6.12116 6.21185 6.22179 6.29557 6.37456 6.41030 6.55408 6.63385 6.72286 6.80801 6.89140 6.92866 7.13058 7.27845 7.29262 7.45506 7.66074 7.80473 7.99421 8.10770 8.55199 9.07277 9.67700 11.15933 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.027689 B = 0.006061 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.984415 B = 4618.408526 C = 5282.501338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.071 3.929 5 H 0.044 0.956 6 C -0.123 4.123 7 C -0.124 4.124 8 C 0.033 3.967 9 N -0.494 5.494 10 C 0.068 3.932 11 H 0.034 0.966 12 C -0.117 4.117 13 C -0.093 4.093 14 C 0.048 3.952 15 H 0.025 0.975 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.100 4.100 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.258 0.742 43 H 0.068 0.932 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 5.189 11.511 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.193 4.193 4 C -0.038 4.038 5 H 0.062 0.938 6 C -0.161 4.161 7 C -0.162 4.162 8 C -0.095 4.095 9 N -0.218 5.218 10 C -0.041 4.041 11 H 0.052 0.948 12 C -0.155 4.155 13 C -0.132 4.132 14 C 0.029 3.971 15 H 0.043 0.957 16 C -0.547 4.547 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.874 5.565 11.268 15.982 hybrid contribution 0.114 -0.604 -0.572 0.840 sum -9.761 4.960 10.695 15.306 Atomic orbital electron populations 1.21846 0.95976 1.01168 1.01332 1.21260 0.94262 0.97426 0.98365 1.21742 1.02712 0.94867 0.99934 1.22589 0.88920 0.97352 0.94913 0.93796 1.22442 0.97257 1.01568 0.94831 1.22277 0.95694 1.00586 0.97617 1.23019 0.99156 0.97947 0.89369 1.65467 1.06054 1.45514 1.04766 1.22799 0.95141 0.91013 0.95104 0.94759 1.22331 0.93779 0.99820 0.99601 1.22063 0.99209 1.00542 0.91381 1.19441 0.89682 0.94996 0.93015 0.95670 1.21163 1.16029 1.13640 1.03846 0.92692 1.24978 0.96463 0.94923 0.97665 1.69975 1.22251 1.22561 1.38247 0.86672 0.78704 0.78917 0.84164 1.20771 1.21391 1.19967 1.22703 0.98761 1.01247 0.91041 0.92802 0.93240 0.93042 0.89452 0.91055 0.93946 0.93419 0.90511 0.92185 0.91423 0.92087 0.94488 0.90415 0.92334 0.94138 0.92965 0.93008 0.93219 0.91347 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.98 37.16 0.33 -1.33 16 2 C -0.09 -1.31 2.44 -90.62 -0.22 -1.53 16 3 C -0.14 -1.85 8.76 37.16 0.33 -1.52 16 4 C 0.07 0.99 2.08 -66.08 -0.14 0.85 16 5 H 0.04 0.65 7.84 -51.93 -0.41 0.24 16 6 C -0.12 -1.42 5.31 -25.35 -0.13 -1.55 16 7 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 8 C 0.03 0.45 5.64 -2.19 -0.01 0.44 16 9 N -0.49 -7.77 4.13 -212.30 -0.88 -8.64 16 10 C 0.07 1.24 2.39 -66.05 -0.16 1.09 16 11 H 0.03 0.65 7.91 -51.93 -0.41 0.23 16 12 C -0.12 -2.27 5.59 -25.50 -0.14 -2.42 16 13 C -0.09 -2.22 5.52 -25.50 -0.14 -2.36 16 14 C 0.05 1.19 2.75 -90.11 -0.25 0.95 16 15 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.51 -14.10 8.38 -34.44 -0.29 -14.39 16 17 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 18 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 19 N -0.89 -26.01 12.49 55.43 0.69 -25.32 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.10 -2.08 4.03 -24.74 -0.10 -2.18 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.53 7.18 -51.93 -0.37 0.16 16 28 H 0.09 1.40 4.86 -51.93 -0.25 1.15 16 29 H 0.07 1.13 7.19 -51.93 -0.37 0.76 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.59 5.94 -51.93 -0.31 0.28 16 32 H 0.08 0.86 5.49 -51.93 -0.29 0.58 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 37 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 38 H 0.06 1.10 7.62 -51.93 -0.40 0.71 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.32 8.00 -51.93 -0.42 0.90 16 41 H 0.05 1.32 7.83 -51.93 -0.41 0.91 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.07 1.48 7.55 -51.93 -0.39 1.09 16 44 H 0.04 0.89 6.49 -51.93 -0.34 0.55 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -28.02 322.50 -9.64 -37.66 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.10 Total: -1.22 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -1.20 Total: -23.92 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: -0.18 Total: -33.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.02 -9.64 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.512 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds