Wall clock time and date at job start Mon Mar 30 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.53000 * 109.47365 * 120.00350 * 2 1 3 5 5 H 1.08993 * 110.36474 * 61.31963 * 4 2 1 6 6 C 1.54380 * 110.40817 * 298.84265 * 4 2 1 7 7 C 1.54260 * 105.05912 * 217.36783 * 6 4 2 8 8 C 1.54370 * 105.06033 * 359.97438 * 7 6 4 9 9 N 1.48563 * 104.59845 * 23.85759 * 8 7 6 10 10 C 1.46894 * 111.00189 * 200.96216 * 9 8 7 11 11 H 1.08994 * 110.44310 * 65.63799 * 10 9 8 12 12 C 1.54273 * 110.48394 * 302.95425 * 10 9 8 13 13 C 1.54088 * 106.62036 * 217.60555 * 12 10 9 14 14 C 1.54266 * 106.49562 * 0.17109 * 13 12 10 15 15 H 1.08995 * 110.48653 * 264.71064 * 14 13 12 16 16 C 1.50702 * 110.48401 * 142.19715 * 14 13 12 17 17 H 1.08002 * 120.00069 * 243.24379 * 16 14 13 18 18 C 1.37881 * 119.99956 * 63.51897 * 16 14 13 19 19 N 1.31508 * 119.99752 * 359.72181 * 18 16 14 20 20 Si 1.86794 * 120.00008 * 179.72152 * 18 16 14 21 21 H 1.48498 * 109.46930 * 89.99735 * 20 18 16 22 22 H 1.48490 * 109.47321 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47180 * 330.00287 * 20 18 16 24 24 C 1.54890 * 110.48473 * 188.18453 * 10 9 8 25 25 H 1.08995 * 109.47042 * 59.99933 * 1 2 3 26 26 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47185 * 299.99846 * 1 2 3 28 28 H 1.09007 * 109.46859 * 240.00291 * 2 1 3 29 29 H 1.08993 * 109.47312 * 183.38237 * 3 2 1 30 30 H 1.09002 * 109.46739 * 303.38741 * 3 2 1 31 31 H 1.09001 * 109.46631 * 63.38458 * 3 2 1 32 32 H 1.08997 * 110.32383 * 336.26872 * 6 4 2 33 33 H 1.09008 * 110.32031 * 98.37052 * 6 4 2 34 34 H 1.08996 * 110.32291 * 118.90445 * 7 6 4 35 35 H 1.09004 * 110.32235 * 241.00327 * 7 6 4 36 36 H 1.08995 * 110.41688 * 265.07431 * 8 7 6 37 37 H 1.09006 * 110.40891 * 142.63043 * 8 7 6 38 38 H 1.09001 * 110.02874 * 336.99984 * 12 10 9 39 39 H 1.08995 * 110.02877 * 98.37997 * 12 10 9 40 40 H 1.09000 * 110.15498 * 240.87487 * 13 12 10 41 41 H 1.08998 * 110.00695 * 119.38536 * 13 12 10 42 42 H 0.97004 * 120.00165 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.75729 * 38.29908 * 24 10 9 44 44 H 1.09004 * 110.75364 * 274.92555 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7042 -1.7582 1.2522 6 6 1.5615 0.0061 2.5240 7 6 2.7415 -0.0984 3.5120 8 6 3.8335 -0.8807 2.7513 9 7 3.5226 -0.6577 1.3158 10 6 4.1325 -1.6981 0.4772 11 1 3.6848 -2.6689 0.6892 12 6 5.6586 -1.7443 0.6988 13 6 6.2951 -2.0283 -0.6754 14 6 5.1317 -2.1399 -1.6823 15 1 4.8464 -3.1826 -1.8216 16 6 5.5141 -1.5183 -3.0009 17 1 4.9757 -0.6571 -3.3682 18 6 6.5474 -2.0526 -3.7410 19 7 7.2030 -3.1012 -3.2938 20 14 7.0163 -1.2868 -5.3791 21 1 8.0455 -0.2392 -5.1592 22 1 7.5615 -2.3356 -6.2778 23 1 5.8144 -0.6767 -6.0024 24 6 3.9771 -1.3454 -1.0230 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1283 1.4431 -0.0606 30 1 1.6279 1.9735 -0.8581 31 1 1.7271 1.9385 0.9188 32 1 1.3431 1.0511 2.3042 33 1 0.6790 -0.4867 2.9323 34 1 3.1023 0.8953 3.7773 35 1 2.4389 -0.6419 4.4071 36 1 3.7780 -1.9423 2.9918 37 1 4.8209 -0.4866 2.9920 38 1 6.0091 -0.7866 1.0835 39 1 5.9103 -2.5419 1.3977 40 1 6.8533 -2.9640 -0.6445 41 1 6.9555 -1.2083 -0.9572 42 1 7.9297 -3.4773 -3.8146 43 1 4.1041 -0.2747 -1.1832 44 1 3.0117 -1.6819 -1.4009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:11 Heat of formation + Delta-G solvation = -34.649583 kcal Electronic energy + Delta-G solvation = -19923.656765 eV Core-core repulsion = 17259.965853 eV Total energy + Delta-G solvation = -2663.690912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85810 -38.14154 -35.56932 -34.50615 -32.08478 -29.99800 -28.57919 -27.97794 -27.85381 -25.63767 -23.57473 -22.21319 -20.91075 -20.40161 -19.73187 -18.32828 -17.22419 -16.85541 -16.45052 -16.09352 -15.25655 -14.97213 -14.76241 -14.32694 -14.21530 -13.90664 -13.63985 -13.46569 -13.06254 -12.97343 -12.83698 -12.60865 -12.46765 -12.34533 -12.15841 -12.03455 -11.80386 -11.72256 -11.56385 -11.45830 -11.35358 -11.11910 -11.00256 -10.76783 -10.68010 -10.46751 -9.28382 -8.11361 -6.20509 1.40520 1.40803 1.51394 2.43785 3.08441 3.19469 3.70884 3.77131 4.03309 4.08835 4.14678 4.26470 4.33770 4.36216 4.43598 4.58085 4.64681 4.71583 4.77857 4.87259 4.90534 4.94096 4.97050 5.03222 5.06787 5.10048 5.12929 5.16986 5.21949 5.24347 5.31431 5.39471 5.40687 5.44016 5.49962 5.65120 5.66947 5.71953 5.91276 5.99744 6.13503 6.30863 6.42733 6.90464 7.46617 8.98112 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.027689 B = 0.006061 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.984415 B = 4618.408526 C = 5282.501338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.130 4.130 4 C 0.067 3.933 5 H 0.036 0.964 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.028 3.972 9 N -0.502 5.502 10 C 0.081 3.919 11 H 0.032 0.968 12 C -0.105 4.105 13 C -0.084 4.084 14 C 0.037 3.963 15 H -0.007 1.007 16 C -0.527 4.527 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.267 1.267 24 C -0.082 4.082 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 6.497 12.890 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.187 4.187 4 C -0.041 4.041 5 H 0.054 0.946 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.100 4.100 9 N -0.226 5.226 10 C -0.028 4.028 11 H 0.050 0.950 12 C -0.143 4.143 13 C -0.123 4.123 14 C 0.018 3.982 15 H 0.011 0.989 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.120 4.120 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.319 6.882 12.656 18.321 hybrid contribution 0.555 -1.033 -1.010 1.547 sum -10.764 5.849 11.647 16.903 Atomic orbital electron populations 1.21788 0.93878 1.01635 1.02399 1.21233 0.96035 0.97101 0.97143 1.21675 1.00912 0.95023 1.01062 1.22678 0.87636 0.97391 0.96405 0.94591 1.22427 0.97968 1.01702 0.93326 1.22265 0.94484 1.00876 0.97834 1.23124 1.00272 0.98490 0.88107 1.65422 1.07384 1.43960 1.05840 1.22502 0.94558 0.91764 0.93934 0.95050 1.22177 0.94248 1.00833 0.96999 1.21847 0.98296 0.98268 0.93878 1.19449 0.91943 0.93605 0.93173 0.98861 1.21509 1.16199 1.13678 1.05166 0.93040 1.25768 0.96420 0.95379 1.01221 1.70101 1.22678 1.23753 1.39611 0.85645 0.78560 0.78161 0.79867 1.20133 1.20905 1.19192 1.22448 0.97051 0.99709 0.92788 0.92482 0.93099 0.91225 0.92441 0.93668 0.93573 0.91609 0.89869 0.90316 0.90633 0.90083 0.94530 0.90458 0.91428 0.92440 0.95356 0.95392 0.93176 0.92263 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.98 71.98 0.65 -2.22 16 2 C -0.10 -2.54 2.44 -10.79 -0.03 -2.57 16 3 C -0.13 -3.35 8.76 71.98 0.63 -2.72 16 4 C 0.07 1.74 2.08 45.07 0.09 1.84 16 5 H 0.04 1.00 7.84 -2.39 -0.02 0.98 16 6 C -0.12 -2.26 5.31 31.49 0.17 -2.09 16 7 C -0.12 -2.20 7.00 31.49 0.22 -1.98 16 8 C 0.03 0.69 5.64 86.45 0.49 1.18 16 9 N -0.50 -15.11 4.13 -825.60 -3.41 -18.51 16 10 C 0.08 2.97 2.39 45.99 0.11 3.08 16 11 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 12 C -0.10 -4.05 5.59 31.39 0.18 -3.87 16 13 C -0.08 -4.15 5.52 31.39 0.17 -3.98 16 14 C 0.04 1.95 2.75 -10.46 -0.03 1.92 16 15 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 16 C -0.53 -30.18 8.38 25.60 0.21 -29.96 16 17 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 18 C 0.01 0.60 5.34 84.66 0.45 1.05 16 19 N -0.92 -55.38 12.49 21.45 0.27 -55.11 16 20 Si 0.95 44.94 29.54 68.60 2.03 46.96 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C -0.08 -3.52 4.03 31.89 0.13 -3.39 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.19 7.18 -2.39 -0.02 1.17 16 28 H 0.06 1.85 4.86 -2.38 -0.01 1.84 16 29 H 0.04 1.40 7.19 -2.39 -0.02 1.38 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.44 5.94 -2.39 -0.01 1.42 16 32 H 0.08 1.53 5.49 -2.39 -0.01 1.52 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.92 8.00 -2.39 -0.02 0.90 16 37 H 0.08 1.93 7.72 -2.38 -0.02 1.91 16 38 H 0.07 2.50 7.62 -2.39 -0.02 2.48 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.03 1.48 8.00 -2.39 -0.02 1.46 16 41 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 42 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.06 2.63 7.55 -2.39 -0.02 2.61 16 44 H 0.05 1.94 6.49 -2.38 -0.02 1.93 16 Total: -1.00 -61.76 322.50 3.27 -58.50 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.93 Total: 11.88 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 3.44 Total: -43.72 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -3.14 Total: -73.62 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.76 3.27 -58.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.848 kcal (2) G-P(sol) polarization free energy of solvation -61.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds