Wall clock time and date at job start Mon Mar 30 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47344 * 2 1 4 4 C 1.52997 * 109.47181 * 120.00117 * 2 1 3 5 5 H 1.09004 * 110.36777 * 62.86823 * 4 2 1 6 6 C 1.54374 * 110.41559 * 300.51733 * 4 2 1 7 7 C 1.54257 * 105.06369 * 217.25085 * 6 4 2 8 8 C 1.54378 * 105.06042 * 359.97438 * 7 6 4 9 9 N 1.48564 * 110.51238 * 185.28360 * 4 2 1 10 10 C 1.46898 * 110.99935 * 277.87015 * 9 4 2 11 11 H 1.08993 * 110.02079 * 64.38932 * 10 9 4 12 12 C 1.54265 * 110.03427 * 302.94691 * 10 9 4 13 13 C 1.54893 * 104.19921 * 217.10859 * 12 10 9 14 14 C 1.54887 * 102.74708 * 37.94009 * 13 12 10 15 15 H 1.09000 * 110.48580 * 80.74001 * 14 13 12 16 16 C 1.50702 * 110.48718 * 203.38148 * 14 13 12 17 17 H 1.08004 * 119.99545 * 114.77630 * 16 14 13 18 18 C 1.37871 * 120.00323 * 294.78065 * 16 14 13 19 19 N 1.31518 * 119.99773 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00392 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47261 * 89.99544 * 20 18 16 22 22 H 1.48501 * 109.47098 * 209.99585 * 20 18 16 23 23 H 1.48499 * 109.46734 * 329.99419 * 20 18 16 24 24 C 1.53877 * 110.03312 * 185.78074 * 10 9 4 25 25 H 1.09005 * 109.46892 * 299.99730 * 1 2 3 26 26 H 1.08997 * 109.47014 * 59.99847 * 1 2 3 27 27 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47296 * 239.99922 * 2 1 3 29 29 H 1.08993 * 109.47259 * 293.58746 * 3 2 1 30 30 H 1.08998 * 109.46533 * 53.59002 * 3 2 1 31 31 H 1.08999 * 109.47047 * 173.58162 * 3 2 1 32 32 H 1.09002 * 110.32249 * 336.14818 * 6 4 2 33 33 H 1.09003 * 110.32786 * 98.35208 * 6 4 2 34 34 H 1.09003 * 110.32749 * 118.89446 * 7 6 4 35 35 H 1.09004 * 110.32249 * 240.99672 * 7 6 4 36 36 H 1.08997 * 110.41268 * 142.63136 * 8 7 6 37 37 H 1.08997 * 110.41251 * 264.96004 * 8 7 6 38 38 H 1.09004 * 110.49066 * 335.78420 * 12 10 9 39 39 H 1.08999 * 110.48804 * 98.43177 * 12 10 9 40 40 H 1.09010 * 110.75192 * 279.62971 * 13 12 10 41 41 H 1.08992 * 110.75902 * 156.25841 * 13 12 10 42 42 H 0.97001 * 120.00279 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.03711 * 238.57277 * 24 10 9 44 44 H 1.09004 * 110.02957 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7271 -1.7654 1.2388 6 6 1.5268 -0.0182 2.5242 7 6 2.6943 -0.1071 3.5285 8 6 3.8145 -0.8569 2.7760 9 7 3.5198 -0.6248 1.3383 10 6 4.1652 -1.6421 0.4979 11 1 3.9359 -1.4593 -0.5518 12 6 3.6837 -3.0492 0.9077 13 6 4.9420 -3.9399 0.7584 14 6 6.0789 -3.0109 1.2519 15 1 6.1197 -3.0035 2.3411 16 6 7.4022 -3.4450 0.6761 17 1 7.9303 -2.7994 -0.0101 18 6 7.9386 -4.6661 1.0252 19 7 7.2957 -5.4520 1.8611 20 14 9.5793 -5.2039 0.3121 21 1 10.6786 -4.7466 1.1996 22 1 9.6117 -6.6848 0.2067 23 1 9.7518 -4.6077 -1.0370 24 6 5.6882 -1.6178 0.7167 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.7735 1.9221 -0.9417 30 1 1.5860 1.9883 0.8271 31 1 3.1239 1.4446 0.1149 32 1 1.2885 1.0241 2.3119 33 1 0.6507 -0.5355 2.9153 34 1 3.0291 0.8916 3.8092 35 1 2.3907 -0.6665 4.4134 36 1 4.7892 -0.4437 3.0354 37 1 3.7803 -1.9217 3.0064 38 1 3.3377 -3.0481 1.9414 39 1 2.8928 -3.3913 0.2401 40 1 5.0963 -4.2189 -0.2841 41 1 4.8656 -4.8255 1.3891 42 1 7.6732 -6.3110 2.1071 43 1 6.1980 -1.4238 -0.2270 44 1 5.9482 -0.8513 1.4468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:14 Heat of formation + Delta-G solvation = -18.224249 kcal Electronic energy + Delta-G solvation = -19891.644065 eV Core-core repulsion = 17228.665409 eV Total energy + Delta-G solvation = -2662.978656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82947 -36.60597 -34.22505 -32.56568 -30.54432 -28.24127 -27.46757 -27.00890 -26.26332 -23.69762 -22.48515 -21.34434 -19.50190 -18.71354 -17.95483 -16.46319 -15.99110 -15.65773 -14.58937 -14.35744 -14.22349 -13.65678 -13.41873 -13.13456 -12.94367 -12.36490 -12.15506 -12.05799 -11.75806 -11.58053 -11.24781 -11.10631 -10.98193 -10.94701 -10.78724 -10.68794 -10.54444 -10.38323 -10.22309 -10.13138 -9.93979 -9.66846 -9.43159 -9.06527 -8.74145 -8.31612 -7.85010 -5.96734 -3.98823 3.32824 3.39536 3.42967 4.34785 4.47754 4.77702 4.89031 5.13264 5.23959 5.27150 5.35256 5.38218 5.59808 5.60400 5.71087 5.72502 5.76525 5.79148 5.89984 5.98956 6.00909 6.04089 6.12102 6.19048 6.26724 6.29993 6.35697 6.44028 6.51631 6.58248 6.61951 6.70449 6.75525 6.90590 7.08691 7.24846 7.38306 7.42107 7.65942 7.74916 7.92764 8.07694 8.51651 9.04318 9.64981 11.12854 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.038092 B = 0.005209 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.878745 B = 5373.509664 C = 5522.695539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.138 4.138 4 C 0.062 3.938 5 H 0.054 0.946 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.028 3.972 9 N -0.496 5.496 10 C 0.072 3.928 11 H 0.071 0.929 12 C -0.161 4.161 13 C -0.097 4.097 14 C 0.049 3.951 15 H 0.027 0.973 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.109 4.109 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.258 0.742 43 H 0.054 0.946 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 10.063 -0.112 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.047 4.047 5 H 0.072 0.928 6 C -0.158 4.158 7 C -0.163 4.163 8 C -0.100 4.100 9 N -0.219 5.219 10 C -0.037 4.037 11 H 0.089 0.911 12 C -0.199 4.199 13 C -0.136 4.136 14 C 0.031 3.969 15 H 0.046 0.954 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.417 10.417 -0.222 16.209 hybrid contribution 0.609 -1.358 -0.143 1.496 sum -11.808 9.058 -0.365 14.887 Atomic orbital electron populations 1.21850 0.95711 1.01371 1.01453 1.20947 0.94503 0.97019 0.97462 1.21751 1.02971 0.94905 0.99909 1.22660 0.89516 0.97927 0.94598 0.92833 1.22395 0.97458 1.01127 0.94857 1.22291 0.95629 1.00653 0.97713 1.23128 0.98777 0.99578 0.88508 1.65601 1.05150 1.45692 1.05473 1.22552 0.96103 0.88726 0.96299 0.91064 1.23123 0.99467 0.97552 0.99802 1.22383 0.92626 0.98321 1.00223 1.19438 0.93303 0.88388 0.95789 0.95438 1.21224 1.04533 1.02304 1.26849 0.92739 1.24978 0.97147 0.96764 0.95063 1.69964 1.38390 1.10581 1.34091 0.86668 0.84539 0.77652 0.79580 1.20766 1.21356 1.19952 1.22336 0.91556 1.00120 1.00639 0.92672 0.92939 0.93077 0.91575 0.94070 0.93291 0.90797 0.90922 0.92213 0.91613 0.91988 0.90239 0.92532 0.92271 0.93846 0.93469 0.91819 0.93201 0.92691 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.95 37.16 0.33 -1.15 16 2 C -0.08 -0.98 2.84 -90.62 -0.26 -1.24 16 3 C -0.14 -1.63 8.73 37.16 0.32 -1.31 16 4 C 0.06 0.84 1.93 -66.07 -0.13 0.71 16 5 H 0.05 0.79 6.39 -51.93 -0.33 0.46 16 6 C -0.12 -1.43 5.29 -25.35 -0.13 -1.56 16 7 C -0.12 -1.57 7.00 -25.35 -0.18 -1.75 16 8 C 0.03 0.44 5.41 -2.17 -0.01 0.42 16 9 N -0.50 -7.82 4.06 -212.90 -0.87 -8.69 16 10 C 0.07 1.30 3.06 -66.60 -0.20 1.10 16 11 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 12 C -0.16 -3.06 4.63 -25.07 -0.12 -3.18 16 13 C -0.10 -2.27 5.75 -24.74 -0.14 -2.41 16 14 C 0.05 1.23 2.72 -90.11 -0.25 0.98 16 15 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 16 C -0.51 -14.13 8.46 -34.44 -0.29 -14.42 16 17 H 0.05 1.50 7.54 -52.48 -0.40 1.10 16 18 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 19 N -0.89 -25.84 12.29 55.43 0.68 -25.16 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.11 -2.28 5.62 -25.61 -0.14 -2.43 16 25 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.54 6.38 -51.93 -0.33 0.21 16 31 H 0.07 1.01 7.30 -51.93 -0.38 0.63 16 32 H 0.07 0.81 5.64 -51.93 -0.29 0.52 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.31 7.17 -51.93 -0.37 0.93 16 37 H 0.06 0.99 5.58 -51.93 -0.29 0.70 16 38 H 0.06 1.12 5.35 -51.93 -0.28 0.84 16 39 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.05 1.14 8.05 -51.92 -0.42 0.72 16 41 H 0.06 1.63 7.55 -51.93 -0.39 1.24 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 1.18 7.66 -51.93 -0.40 0.79 16 44 H 0.05 1.07 6.56 -51.93 -0.34 0.73 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -27.71 319.89 -9.57 -37.27 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.90 Total: -0.13 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -1.29 Total: -24.60 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.18 Total: -33.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.71 -9.57 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.050 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds