Wall clock time and date at job start Mon Mar 30 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47427 * 2 1 4 4 C 1.53002 * 109.47534 * 120.00526 * 2 1 3 5 5 H 1.08993 * 110.33427 * 57.73679 * 4 2 1 6 6 C 1.54914 * 110.46275 * 295.42848 * 4 2 1 7 7 C 1.55400 * 101.73740 * 204.14233 * 6 4 2 8 8 C 1.54308 * 102.90130 * 35.47800 * 7 6 4 9 9 N 1.47443 * 107.37587 * 337.89266 * 8 7 6 10 10 C 1.46890 * 111.00433 * 236.66410 * 9 8 7 11 11 H 1.08999 * 110.43845 * 62.65980 * 10 9 8 12 12 C 1.54887 * 110.48880 * 185.35101 * 10 9 8 13 13 C 1.54893 * 102.75116 * 156.61778 * 12 10 9 14 14 C 1.54255 * 104.19411 * 322.05783 * 13 12 10 15 15 H 1.09001 * 110.03264 * 264.32073 * 14 13 12 16 16 C 1.50702 * 110.03134 * 142.89602 * 14 13 12 17 17 H 1.08005 * 119.99761 * 277.97550 * 16 14 13 18 18 C 1.37879 * 119.99921 * 97.98279 * 16 14 13 19 19 N 1.31519 * 119.99642 * 180.30819 * 18 16 14 20 20 Si 1.86795 * 120.00220 * 0.30611 * 18 16 14 21 21 H 1.48495 * 109.47216 * 84.57410 * 20 18 16 22 22 H 1.48503 * 109.46966 * 204.57709 * 20 18 16 23 23 H 1.48501 * 109.47048 * 324.57426 * 20 18 16 24 24 C 1.53875 * 106.60290 * 23.61174 * 14 13 12 25 25 H 1.09001 * 109.46711 * 299.99619 * 1 2 3 26 26 H 1.08992 * 109.47444 * 59.99492 * 1 2 3 27 27 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47016 * 239.99939 * 2 1 3 29 29 H 1.08999 * 109.46700 * 300.00205 * 3 2 1 30 30 H 1.09001 * 109.46864 * 60.00475 * 3 2 1 31 31 H 1.08997 * 109.47204 * 180.02562 * 3 2 1 32 32 H 1.08999 * 110.98893 * 322.13980 * 6 4 2 33 33 H 1.08991 * 110.99085 * 85.92258 * 6 4 2 34 34 H 1.09002 * 110.67744 * 277.16957 * 7 6 4 35 35 H 1.09003 * 110.84518 * 153.86434 * 7 6 4 36 36 H 1.09007 * 109.89172 * 218.40680 * 8 7 6 37 37 H 1.09002 * 109.89094 * 97.38336 * 8 7 6 38 38 H 1.08999 * 110.75613 * 274.93839 * 12 10 9 39 39 H 1.08998 * 110.75792 * 38.30358 * 12 10 9 40 40 H 1.09001 * 110.48731 * 203.37766 * 13 12 10 41 41 H 1.08999 * 110.59667 * 80.79484 * 13 12 10 42 42 H 0.96999 * 119.99875 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.02962 * 240.71546 * 24 14 13 44 44 H 1.08994 * 110.07735 * 119.30539 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6520 -1.7393 1.2837 6 6 1.6331 0.0545 2.5267 7 6 2.7101 -0.4202 3.5414 8 6 3.9701 -0.5672 2.6629 9 7 3.5183 -0.7331 1.2693 10 6 4.0428 -1.9770 0.6902 11 1 3.6622 -2.8407 1.2354 12 6 3.6738 -2.0740 -0.8109 13 6 4.7538 -3.0349 -1.3670 14 6 6.0374 -2.6416 -0.6073 15 1 6.6246 -1.9427 -1.2031 16 6 6.8529 -3.8712 -0.3005 17 1 6.6084 -4.4814 0.5565 18 6 7.9113 -4.2171 -1.1137 19 7 8.6192 -5.2935 -0.8494 20 14 8.3396 -3.1569 -2.5908 21 1 9.2113 -2.0351 -2.1589 22 1 9.0546 -3.9793 -3.5997 23 1 7.0933 -2.6137 -3.1883 24 6 5.5855 -1.9690 0.7008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6976 1.1308 2.3671 33 1 0.6334 -0.2303 2.8547 34 1 2.4310 -1.3789 3.9786 35 1 2.8672 0.3277 4.3187 36 1 4.5396 -1.4428 2.9747 37 1 4.5882 0.3266 2.7485 38 1 2.6776 -2.4979 -0.9372 39 1 3.7425 -1.0972 -1.2895 40 1 4.8834 -2.8839 -2.4387 41 1 4.4892 -4.0714 -1.1580 42 1 9.3635 -5.5371 -1.4217 43 1 5.9533 -0.9436 0.7398 44 1 5.9559 -2.5311 1.5580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:16 Heat of formation + Delta-G solvation = -21.248805 kcal Electronic energy + Delta-G solvation = -19831.044647 eV Core-core repulsion = 17167.934837 eV Total energy + Delta-G solvation = -2663.109810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72812 -36.74876 -34.52293 -32.53060 -30.88124 -28.58723 -27.61079 -27.08759 -26.50531 -23.53435 -22.65892 -20.97179 -19.56288 -18.87805 -18.37365 -17.06360 -16.08035 -15.66409 -14.71905 -14.56557 -13.83844 -13.65855 -13.61713 -13.41117 -12.91826 -12.60658 -12.34326 -12.18058 -11.99168 -11.73033 -11.62586 -11.31360 -11.09934 -10.97327 -10.84215 -10.70005 -10.52886 -10.34600 -10.17128 -10.06395 -9.96374 -9.82896 -9.62100 -9.32619 -8.84775 -8.47453 -7.95431 -6.02163 -3.99555 3.33328 3.41023 3.44513 4.16319 4.47759 4.69963 4.72318 5.03595 5.16271 5.17265 5.24248 5.29955 5.48305 5.52634 5.54553 5.62544 5.66865 5.71194 5.84079 5.88598 5.90782 5.96551 5.98953 6.06272 6.16906 6.21367 6.26980 6.30438 6.39157 6.44520 6.53226 6.56128 6.59592 6.75240 6.82976 7.01320 7.03054 7.28899 7.46371 7.52234 7.60235 7.88354 8.60999 9.02672 9.61983 11.11498 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.005789 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.870966 B = 4835.447099 C = 5261.098573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.138 4.138 4 C 0.079 3.921 5 H 0.049 0.951 6 C -0.128 4.128 7 C -0.143 4.143 8 C 0.043 3.957 9 N -0.517 5.517 10 C 0.077 3.923 11 H 0.039 0.961 12 C -0.113 4.113 13 C -0.120 4.120 14 C 0.014 3.986 15 H 0.030 0.970 16 C -0.505 4.505 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.265 1.265 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.053 0.947 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 11.911 4.360 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.195 4.195 4 C -0.029 4.029 5 H 0.067 0.933 6 C -0.166 4.166 7 C -0.181 4.181 8 C -0.085 4.085 9 N -0.241 5.241 10 C -0.031 4.031 11 H 0.057 0.943 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.006 4.006 15 H 0.048 0.952 16 C -0.543 4.543 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.190 1.190 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.644 12.189 4.002 19.469 hybrid contribution 0.065 -0.351 -0.287 0.458 sum -14.579 11.839 3.715 19.144 Atomic orbital electron populations 1.21852 0.95893 1.01305 1.01390 1.21124 0.94182 0.97022 0.98206 1.21771 1.02564 0.95119 1.00089 1.22515 0.88377 0.97492 0.94551 0.93291 1.22891 0.97989 1.01102 0.94615 1.22829 0.96088 1.01086 0.98119 1.22738 0.96516 1.01753 0.87452 1.63587 1.06994 1.36211 1.17277 1.22740 0.96840 0.88487 0.95051 0.94334 1.22599 0.97869 0.99885 0.94752 1.22693 0.96099 0.98430 0.98683 1.19659 0.93309 0.95735 0.91856 0.95157 1.21136 1.12343 1.08236 1.12536 0.91106 1.25097 0.95947 0.94964 0.97378 1.69912 1.20131 1.25254 1.39122 0.86826 0.78794 0.80526 0.83109 1.20334 1.21811 1.19005 1.22279 0.91561 0.99630 1.00342 0.92918 0.92867 0.93105 0.90349 0.93953 0.93252 0.91220 0.90216 0.91606 0.91921 0.91219 0.92374 0.90984 0.93484 0.91432 0.93614 0.91901 0.92810 0.92858 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.02 37.16 0.34 -1.10 16 2 C -0.09 -1.02 2.76 -90.62 -0.25 -1.27 16 3 C -0.14 -1.58 8.69 37.16 0.32 -1.25 16 4 C 0.08 1.00 1.92 -66.18 -0.13 0.88 16 5 H 0.05 0.67 7.76 -51.93 -0.40 0.27 16 6 C -0.13 -1.38 5.45 -24.45 -0.13 -1.51 16 7 C -0.14 -1.59 6.97 -24.77 -0.17 -1.76 16 8 C 0.04 0.59 6.27 -2.84 -0.02 0.57 16 9 N -0.52 -7.65 3.96 -213.52 -0.85 -8.50 16 10 C 0.08 1.35 2.17 -66.06 -0.14 1.20 16 11 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 12 C -0.11 -1.98 4.54 -24.74 -0.11 -2.09 16 13 C -0.12 -2.55 6.35 -25.08 -0.16 -2.70 16 14 C 0.01 0.32 2.49 -90.66 -0.23 0.10 16 15 H 0.03 0.73 5.47 -51.93 -0.28 0.45 16 16 C -0.50 -14.18 8.53 -34.44 -0.29 -14.47 16 17 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 19 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.97 26.89 -169.99 -4.57 17.40 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.36 6.78 56.52 0.38 -5.98 16 24 C -0.10 -2.04 5.02 -25.61 -0.13 -2.17 16 25 H 0.05 0.47 7.34 -51.93 -0.38 0.09 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.04 5.41 -51.93 -0.28 0.75 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.51 6.02 -51.93 -0.31 0.20 16 31 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 32 H 0.08 0.83 5.68 -51.93 -0.29 0.54 16 33 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.86 6.96 -51.93 -0.36 0.50 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 39 H 0.07 1.16 7.32 -51.93 -0.38 0.78 16 40 H 0.05 0.96 7.95 -51.93 -0.41 0.54 16 41 H 0.06 1.39 7.85 -51.93 -0.41 0.98 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 43 H 0.05 1.05 7.96 -51.93 -0.41 0.64 16 44 H 0.06 1.25 7.46 -51.93 -0.39 0.86 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -29.15 321.38 -9.07 -38.22 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.07 Total: -1.05 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.20 Total: -23.73 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.07 Total: -35.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.57 Total: 17.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.15 -9.07 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.969 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds