Wall clock time and date at job start Mon Mar 30 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47427 * 2 1 4 4 C 1.53002 * 109.47534 * 120.00526 * 2 1 3 5 5 H 1.08993 * 110.33427 * 57.73679 * 4 2 1 6 6 C 1.54914 * 110.46275 * 295.42848 * 4 2 1 7 7 C 1.55400 * 101.73740 * 204.14233 * 6 4 2 8 8 C 1.54308 * 102.90130 * 35.47800 * 7 6 4 9 9 N 1.47443 * 107.37587 * 337.89266 * 8 7 6 10 10 C 1.46890 * 111.00433 * 236.66410 * 9 8 7 11 11 H 1.08999 * 110.43845 * 62.65980 * 10 9 8 12 12 C 1.54887 * 110.48880 * 185.35101 * 10 9 8 13 13 C 1.54893 * 102.75116 * 156.61778 * 12 10 9 14 14 C 1.54255 * 104.19411 * 322.05783 * 13 12 10 15 15 H 1.09001 * 110.03264 * 264.32073 * 14 13 12 16 16 C 1.50702 * 110.03134 * 142.89602 * 14 13 12 17 17 H 1.08005 * 119.99761 * 277.97550 * 16 14 13 18 18 C 1.37879 * 119.99921 * 97.98279 * 16 14 13 19 19 N 1.31519 * 119.99642 * 180.30819 * 18 16 14 20 20 Si 1.86795 * 120.00220 * 0.30611 * 18 16 14 21 21 H 1.48495 * 109.47216 * 84.57410 * 20 18 16 22 22 H 1.48503 * 109.46966 * 204.57709 * 20 18 16 23 23 H 1.48501 * 109.47048 * 324.57426 * 20 18 16 24 24 C 1.53875 * 106.60290 * 23.61174 * 14 13 12 25 25 H 1.09001 * 109.46711 * 299.99619 * 1 2 3 26 26 H 1.08992 * 109.47444 * 59.99492 * 1 2 3 27 27 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47016 * 239.99939 * 2 1 3 29 29 H 1.08999 * 109.46700 * 300.00205 * 3 2 1 30 30 H 1.09001 * 109.46864 * 60.00475 * 3 2 1 31 31 H 1.08997 * 109.47204 * 180.02562 * 3 2 1 32 32 H 1.08999 * 110.98893 * 322.13980 * 6 4 2 33 33 H 1.08991 * 110.99085 * 85.92258 * 6 4 2 34 34 H 1.09002 * 110.67744 * 277.16957 * 7 6 4 35 35 H 1.09003 * 110.84518 * 153.86434 * 7 6 4 36 36 H 1.09007 * 109.89172 * 218.40680 * 8 7 6 37 37 H 1.09002 * 109.89094 * 97.38336 * 8 7 6 38 38 H 1.08999 * 110.75613 * 274.93839 * 12 10 9 39 39 H 1.08998 * 110.75792 * 38.30358 * 12 10 9 40 40 H 1.09001 * 110.48731 * 203.37766 * 13 12 10 41 41 H 1.08999 * 110.59667 * 80.79484 * 13 12 10 42 42 H 0.96999 * 119.99875 * 179.97438 * 19 18 16 43 43 H 1.09004 * 110.02962 * 240.71546 * 24 14 13 44 44 H 1.08994 * 110.07735 * 119.30539 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6520 -1.7393 1.2837 6 6 1.6331 0.0545 2.5267 7 6 2.7101 -0.4202 3.5414 8 6 3.9701 -0.5672 2.6629 9 7 3.5183 -0.7331 1.2693 10 6 4.0428 -1.9770 0.6902 11 1 3.6622 -2.8407 1.2354 12 6 3.6738 -2.0740 -0.8109 13 6 4.7538 -3.0349 -1.3670 14 6 6.0374 -2.6416 -0.6073 15 1 6.6246 -1.9427 -1.2031 16 6 6.8529 -3.8712 -0.3005 17 1 6.6084 -4.4814 0.5565 18 6 7.9113 -4.2171 -1.1137 19 7 8.6192 -5.2935 -0.8494 20 14 8.3396 -3.1569 -2.5908 21 1 9.2113 -2.0351 -2.1589 22 1 9.0546 -3.9793 -3.5997 23 1 7.0933 -2.6137 -3.1883 24 6 5.5855 -1.9690 0.7008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6976 1.1308 2.3671 33 1 0.6334 -0.2303 2.8547 34 1 2.4310 -1.3789 3.9786 35 1 2.8672 0.3277 4.3187 36 1 4.5396 -1.4428 2.9747 37 1 4.5882 0.3266 2.7485 38 1 2.6776 -2.4979 -0.9372 39 1 3.7425 -1.0972 -1.2895 40 1 4.8834 -2.8839 -2.4387 41 1 4.4892 -4.0714 -1.1580 42 1 9.3635 -5.5371 -1.4217 43 1 5.9533 -0.9436 0.7398 44 1 5.9559 -2.5311 1.5580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:16 Heat of formation + Delta-G solvation = -37.471255 kcal Electronic energy + Delta-G solvation = -19831.748106 eV Core-core repulsion = 17167.934837 eV Total energy + Delta-G solvation = -2663.813269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89320 -38.26854 -35.51716 -34.56908 -32.29648 -30.15735 -28.82532 -28.10294 -27.80184 -25.41244 -23.63901 -22.13335 -21.07438 -20.08866 -19.84755 -19.17159 -17.27322 -16.81065 -16.44708 -15.62042 -15.39519 -15.12973 -14.76224 -14.57401 -14.45216 -14.00818 -13.82988 -13.50885 -13.02675 -12.95650 -12.85633 -12.65257 -12.50241 -12.22634 -12.10138 -11.89067 -11.78373 -11.75909 -11.65759 -11.45658 -11.42005 -11.32473 -11.10962 -10.97357 -10.82809 -10.66646 -9.15654 -8.27800 -6.29710 1.34951 1.36110 1.47972 2.36270 2.99631 3.10185 3.71538 3.74963 3.93241 4.01618 4.13617 4.22768 4.29607 4.35134 4.44423 4.57995 4.60753 4.67071 4.71902 4.75658 4.87596 4.93788 4.95648 5.00568 5.01213 5.05996 5.07056 5.14497 5.18183 5.23146 5.25463 5.26508 5.38390 5.40085 5.44025 5.54204 5.63533 5.67205 5.71117 5.78671 6.22355 6.30820 6.38043 6.76368 7.34802 8.89598 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.005789 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.870966 B = 4835.447099 C = 5261.098573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.075 3.925 5 H 0.039 0.961 6 C -0.120 4.120 7 C -0.137 4.137 8 C 0.037 3.963 9 N -0.517 5.517 10 C 0.088 3.912 11 H 0.025 0.975 12 C -0.096 4.096 13 C -0.119 4.119 14 C 0.007 3.993 15 H 0.030 0.970 16 C -0.508 4.508 17 H 0.027 0.973 18 C 0.006 3.994 19 N -0.955 5.955 20 Si 0.945 3.055 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.245 1.245 24 C -0.093 4.093 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.173 14.579 3.746 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.191 4.191 4 C -0.033 4.033 5 H 0.057 0.943 6 C -0.157 4.157 7 C -0.175 4.175 8 C -0.091 4.091 9 N -0.241 5.241 10 C -0.020 4.020 11 H 0.042 0.958 12 C -0.134 4.134 13 C -0.158 4.158 14 C -0.012 4.012 15 H 0.048 0.952 16 C -0.546 4.546 17 H 0.045 0.955 18 C -0.190 4.190 19 N -0.596 5.596 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.169 1.169 24 C -0.131 4.131 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.822 14.873 3.399 22.710 hybrid contribution 0.735 -1.235 0.011 1.438 sum -16.087 13.638 3.410 21.364 Atomic orbital electron populations 1.21808 0.94131 1.01619 1.02408 1.21112 0.95617 0.96906 0.96851 1.21721 1.01195 0.95016 1.01163 1.22637 0.86693 0.97598 0.96405 0.94308 1.22876 0.98603 1.01226 0.93015 1.22803 0.94738 1.01737 0.98246 1.22805 0.97812 1.00986 0.87466 1.63589 1.08661 1.33909 1.17987 1.22475 0.94547 0.89520 0.95497 0.95752 1.22473 0.97491 0.99377 0.94051 1.22555 0.96031 0.98417 0.98759 1.19701 0.93914 0.93821 0.93774 0.95168 1.21391 1.13000 1.09247 1.10921 0.95513 1.25991 0.95894 0.96323 1.00760 1.70066 1.21159 1.27492 1.40881 0.85763 0.79354 0.78775 0.79161 1.19334 1.21512 1.16870 1.22099 0.94059 0.99159 0.97788 0.91744 0.92045 0.93172 0.91826 0.93062 0.92054 0.93224 0.89344 0.89805 0.92088 0.89284 0.94377 0.90582 0.91472 0.90351 0.93042 0.93673 0.92692 0.92019 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.02 71.98 0.65 -1.65 16 2 C -0.09 -1.77 2.76 -10.79 -0.03 -1.80 16 3 C -0.13 -2.64 8.69 71.98 0.63 -2.01 16 4 C 0.07 1.72 1.92 45.39 0.09 1.81 16 5 H 0.04 0.99 7.76 -2.39 -0.02 0.97 16 6 C -0.12 -2.17 5.45 32.07 0.17 -1.99 16 7 C -0.14 -2.72 6.97 31.86 0.22 -2.49 16 8 C 0.04 0.97 6.27 86.64 0.54 1.51 16 9 N -0.52 -14.57 3.96 -829.44 -3.28 -17.86 16 10 C 0.09 3.05 2.17 45.99 0.10 3.15 16 11 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 12 C -0.10 -3.20 4.54 31.89 0.14 -3.06 16 13 C -0.12 -4.95 6.35 31.67 0.20 -4.75 16 14 C 0.01 0.34 2.49 -10.82 -0.03 0.31 16 15 H 0.03 1.43 5.47 -2.39 -0.01 1.41 16 16 C -0.51 -29.63 8.53 25.60 0.22 -29.41 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 18 C 0.01 0.38 5.47 84.65 0.46 0.84 16 19 N -0.96 -61.05 13.96 21.45 0.30 -60.75 16 20 Si 0.95 45.38 26.89 68.60 1.84 47.22 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.25 -10.88 6.78 99.48 0.67 -10.20 16 24 C -0.09 -3.84 5.02 31.32 0.16 -3.68 16 25 H 0.06 0.90 7.34 -2.39 -0.02 0.88 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.51 5.41 -2.39 -0.01 1.49 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.05 6.02 -2.39 -0.01 1.04 16 31 H 0.05 1.18 7.65 -2.39 -0.02 1.16 16 32 H 0.09 1.49 5.68 -2.39 -0.01 1.47 16 33 H 0.08 1.27 8.03 -2.39 -0.02 1.25 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.14 6.96 -2.38 -0.02 1.12 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.99 7.81 -2.39 -0.02 1.97 16 39 H 0.08 2.49 7.32 -2.39 -0.02 2.47 16 40 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 41 H 0.04 2.01 7.85 -2.39 -0.02 1.99 16 42 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 44 H 0.03 1.58 7.46 -2.39 -0.02 1.57 16 Total: -1.00 -64.76 321.38 3.29 -61.46 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.90 Total: 13.15 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 3.53 Total: -43.23 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.98 Total: -78.61 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.84 Total: 47.22 kcal Total: -64.76 3.29 -61.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds