Wall clock time and date at job start Mon Mar 30 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 H 1.08998 * 110.90731 * 57.41108 * 3 2 1 5 5 C 1.55146 * 110.98571 * 293.54179 * 3 2 1 6 6 C 1.54320 * 103.01904 * 206.25765 * 5 3 2 7 7 N 1.47444 * 107.23095 * 22.28473 * 6 5 3 8 8 C 1.46906 * 110.99851 * 123.26257 * 7 6 5 9 9 H 1.09000 * 109.46693 * 299.87252 * 8 7 6 10 10 C 1.52999 * 109.46904 * 179.87601 * 8 7 6 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00027 * 12 11 10 14 14 H 1.08992 * 109.46974 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46650 * 300.00160 * 13 12 11 16 16 H 1.07998 * 120.00218 * 120.00114 * 15 13 12 17 17 C 1.37875 * 120.00046 * 299.99461 * 15 13 12 18 18 N 1.31511 * 120.00412 * 180.02562 * 17 15 13 19 19 Si 1.86806 * 120.00142 * 0.02562 * 17 15 13 20 20 H 1.48507 * 109.47041 * 89.99719 * 19 17 15 21 21 H 1.48493 * 109.47237 * 209.99491 * 19 17 15 22 22 H 1.48500 * 109.47007 * 329.99830 * 19 17 15 23 23 C 1.52996 * 109.46972 * 59.99860 * 13 12 11 24 24 C 1.47843 * 108.57175 * 0.99170 * 7 6 5 25 25 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00479 * 1 2 3 27 27 H 1.09001 * 109.46707 * 60.00046 * 1 2 3 28 28 H 1.09000 * 109.47142 * 239.99521 * 2 1 3 29 29 H 1.09001 * 109.46707 * 119.99954 * 2 1 3 30 30 H 1.08999 * 110.70387 * 87.87961 * 5 3 2 31 31 H 1.08996 * 110.70886 * 324.64385 * 5 3 2 32 32 H 1.09007 * 109.88784 * 262.88279 * 6 5 3 33 33 H 1.08997 * 109.89273 * 141.69331 * 6 5 3 34 34 H 1.08993 * 109.47839 * 59.99803 * 10 8 7 35 35 H 1.09000 * 109.47160 * 299.99365 * 10 8 7 36 36 H 1.09001 * 109.46998 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47050 * 299.99699 * 11 10 8 38 38 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 39 39 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 40 40 H 0.96997 * 120.00603 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47054 * 60.00300 * 23 13 12 42 42 H 1.09001 * 109.46997 * 180.02562 * 23 13 12 43 43 H 1.09000 * 110.37058 * 94.72711 * 24 7 6 44 44 H 1.09000 * 110.37439 * 217.07783 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6527 1.9920 0.8579 5 6 1.6798 2.1592 -1.3280 6 6 2.7756 3.2391 -1.4485 7 7 3.9187 2.7947 -0.6302 8 6 5.1433 2.7116 -1.4375 9 1 4.9967 1.9970 -2.2474 10 6 6.3055 2.2513 -0.5553 11 6 7.5807 2.1642 -1.3963 12 6 7.8997 3.5408 -1.9830 13 6 6.7375 4.0010 -2.8652 14 1 6.9650 4.9815 -3.2834 15 6 6.5345 3.0126 -3.9845 16 1 5.5904 2.4981 -4.0860 17 6 7.5540 2.7653 -4.8791 18 7 7.3768 1.9031 -5.8562 19 14 9.1873 3.6548 -4.7033 20 1 10.0923 2.8609 -3.8338 21 1 9.8072 3.8207 -6.0424 22 1 8.9606 4.9899 -4.0938 23 6 5.4623 4.0882 -2.0242 24 6 3.5883 1.4835 -0.0323 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.6929 2.6172 -1.2633 31 1 1.7293 1.4646 -2.1666 32 1 2.4001 4.1917 -1.0747 33 1 3.0823 3.3417 -2.4894 34 1 6.0784 1.2705 -0.1376 35 1 6.4520 2.9660 0.2546 36 1 8.4088 1.8367 -0.7677 37 1 7.4338 1.4493 -2.2059 38 1 8.0466 4.2556 -1.1733 39 1 8.8084 3.4788 -2.5817 40 1 8.0942 1.7288 -6.4854 41 1 5.6092 4.8030 -1.2146 42 1 4.6342 4.4156 -2.6528 43 1 3.9766 0.6753 -0.6521 44 1 3.9909 1.4151 0.9783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:19 Heat of formation + Delta-G solvation = -21.449090 kcal Electronic energy + Delta-G solvation = -19831.202465 eV Core-core repulsion = 17168.083969 eV Total energy + Delta-G solvation = -2663.118495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.47689 -37.27350 -34.08680 -32.30924 -30.52585 -30.18038 -28.48918 -27.17252 -24.76376 -23.04939 -22.16300 -21.07166 -20.00194 -19.66242 -18.59011 -16.16224 -15.87104 -15.63347 -14.65443 -14.48634 -14.09087 -13.64597 -13.33958 -13.14322 -13.06876 -12.60486 -12.41968 -12.26052 -12.20753 -11.90163 -11.54263 -11.30344 -11.15276 -10.86636 -10.66262 -10.59493 -10.47995 -10.43907 -10.34651 -10.08809 -9.87635 -9.80670 -9.12691 -9.01810 -8.77137 -8.46697 -7.78526 -6.03103 -4.00052 3.30333 3.41136 3.43221 4.34923 4.45416 4.65084 4.85128 4.96760 5.21291 5.29471 5.36976 5.41416 5.57124 5.59616 5.63310 5.70399 5.84625 5.87728 5.90430 5.97025 6.01416 6.05397 6.16569 6.20440 6.26233 6.30473 6.33306 6.37259 6.44904 6.49547 6.51242 6.60412 6.67168 6.83298 6.93656 7.11455 7.23352 7.28850 7.50096 7.54245 7.71735 7.86219 8.57095 8.99916 9.60764 11.10003 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032861 B = 0.005705 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.867431 B = 4906.756601 C = 5130.033453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.098 4.098 4 H 0.079 0.921 5 C -0.136 4.136 6 C 0.040 3.960 7 N -0.531 5.531 8 C 0.088 3.912 9 H 0.058 0.942 10 C -0.098 4.098 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.008 3.992 14 H 0.027 0.973 15 C -0.501 4.501 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.905 5.905 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.300 1.300 22 H -0.267 1.267 23 C -0.086 4.086 24 C 0.048 3.952 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -1.135 11.865 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.117 4.117 4 H 0.097 0.903 5 C -0.174 4.174 6 C -0.088 4.088 7 N -0.255 5.255 8 C -0.020 4.020 9 H 0.075 0.925 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.154 4.154 13 C -0.011 4.011 14 H 0.045 0.955 15 C -0.539 4.539 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.192 1.192 23 C -0.124 4.124 24 C -0.080 4.080 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.010 -0.847 12.094 15.105 hybrid contribution 0.906 -0.215 -0.702 1.166 sum -8.104 -1.062 11.392 14.021 Atomic orbital electron populations 1.21761 0.95938 1.01263 1.01787 1.21478 0.95771 0.96023 1.02002 1.22349 0.95548 0.95652 0.98106 0.90306 1.22846 0.99011 0.98186 0.97360 1.22797 0.90422 0.97876 0.97660 1.63652 1.03304 1.25561 1.33015 1.21818 0.87979 0.98595 0.93580 0.92459 1.21447 0.94992 0.99523 0.97665 1.21373 0.95242 0.98926 0.98923 1.21831 0.99459 0.96100 0.98008 1.19201 0.90936 0.97147 0.93838 0.95519 1.20990 1.00878 1.22870 1.09157 0.91016 1.24993 0.98466 0.94740 0.94986 1.69898 1.33254 1.34834 1.16356 0.86871 0.84620 0.81077 0.75795 1.20685 1.22817 1.19217 1.21413 0.98763 0.94612 0.97564 1.23028 0.94023 0.91189 0.99719 0.93045 0.92933 0.92612 0.91907 0.92040 0.91394 0.91543 0.91283 0.91845 0.93455 0.92611 0.94183 0.90309 0.94602 0.93966 0.92851 0.93782 0.92990 0.93577 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.76 37.16 0.36 -1.00 16 2 C -0.11 -1.20 5.45 -26.73 -0.15 -1.34 16 3 C -0.10 -1.17 3.07 -88.48 -0.27 -1.44 16 4 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.14 -1.73 5.58 -24.90 -0.14 -1.87 16 6 C 0.04 0.61 6.15 -2.83 -0.02 0.60 16 7 N -0.53 -8.70 5.03 -223.28 -1.12 -9.82 16 8 C 0.09 1.66 1.30 -67.71 -0.09 1.58 16 9 H 0.06 1.27 6.58 -51.93 -0.34 0.92 16 10 C -0.10 -1.78 5.09 -26.73 -0.14 -1.91 16 11 C -0.11 -2.15 5.70 -26.73 -0.15 -2.31 16 12 C -0.12 -2.54 4.94 -26.73 -0.13 -2.67 16 13 C 0.01 0.19 2.18 -91.77 -0.20 -0.01 16 14 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 15 C -0.50 -13.60 7.19 -34.44 -0.25 -13.85 16 16 H 0.07 2.11 6.95 -52.49 -0.36 1.75 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 19 Si 0.89 22.12 24.37 -169.99 -4.14 17.97 16 20 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 23 C -0.09 -1.74 4.56 -26.73 -0.12 -1.86 16 24 C 0.05 0.69 4.86 -2.30 -0.01 0.68 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.51 7.50 -51.93 -0.39 0.12 16 28 H 0.06 0.71 8.11 -51.93 -0.42 0.28 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.07 0.89 8.01 -51.93 -0.42 0.48 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 34 H 0.05 0.79 7.04 -51.93 -0.37 0.42 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.81 7.22 -51.93 -0.37 1.43 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.06 6.49 -51.93 -0.34 0.72 16 43 H 0.05 0.71 7.48 -51.93 -0.39 0.32 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -28.57 315.19 -9.24 -37.82 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.10 Total: -0.53 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.40 Total: -23.54 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.35 Total: -36.47 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.57 -9.24 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.367 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds