Wall clock time and date at job start Mon Mar 30 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 H 1.08998 * 110.90731 * 57.41108 * 3 2 1 5 5 C 1.55146 * 110.98571 * 293.54179 * 3 2 1 6 6 C 1.54320 * 103.01904 * 206.25765 * 5 3 2 7 7 N 1.47444 * 107.23095 * 22.28473 * 6 5 3 8 8 C 1.46906 * 110.99851 * 123.26257 * 7 6 5 9 9 H 1.09000 * 109.46693 * 299.87252 * 8 7 6 10 10 C 1.52999 * 109.46904 * 179.87601 * 8 7 6 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00027 * 12 11 10 14 14 H 1.08992 * 109.46974 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46650 * 300.00160 * 13 12 11 16 16 H 1.07998 * 120.00218 * 120.00114 * 15 13 12 17 17 C 1.37875 * 120.00046 * 299.99461 * 15 13 12 18 18 N 1.31511 * 120.00412 * 180.02562 * 17 15 13 19 19 Si 1.86806 * 120.00142 * 0.02562 * 17 15 13 20 20 H 1.48507 * 109.47041 * 89.99719 * 19 17 15 21 21 H 1.48493 * 109.47237 * 209.99491 * 19 17 15 22 22 H 1.48500 * 109.47007 * 329.99830 * 19 17 15 23 23 C 1.52996 * 109.46972 * 59.99860 * 13 12 11 24 24 C 1.47843 * 108.57175 * 0.99170 * 7 6 5 25 25 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00479 * 1 2 3 27 27 H 1.09001 * 109.46707 * 60.00046 * 1 2 3 28 28 H 1.09000 * 109.47142 * 239.99521 * 2 1 3 29 29 H 1.09001 * 109.46707 * 119.99954 * 2 1 3 30 30 H 1.08999 * 110.70387 * 87.87961 * 5 3 2 31 31 H 1.08996 * 110.70886 * 324.64385 * 5 3 2 32 32 H 1.09007 * 109.88784 * 262.88279 * 6 5 3 33 33 H 1.08997 * 109.89273 * 141.69331 * 6 5 3 34 34 H 1.08993 * 109.47839 * 59.99803 * 10 8 7 35 35 H 1.09000 * 109.47160 * 299.99365 * 10 8 7 36 36 H 1.09001 * 109.46998 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47050 * 299.99699 * 11 10 8 38 38 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 39 39 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 40 40 H 0.96997 * 120.00603 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47054 * 60.00300 * 23 13 12 42 42 H 1.09001 * 109.46997 * 180.02562 * 23 13 12 43 43 H 1.09000 * 110.37058 * 94.72711 * 24 7 6 44 44 H 1.09000 * 110.37439 * 217.07783 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6527 1.9920 0.8579 5 6 1.6798 2.1592 -1.3280 6 6 2.7756 3.2391 -1.4485 7 7 3.9187 2.7947 -0.6302 8 6 5.1433 2.7116 -1.4375 9 1 4.9967 1.9970 -2.2474 10 6 6.3055 2.2513 -0.5553 11 6 7.5807 2.1642 -1.3963 12 6 7.8997 3.5408 -1.9830 13 6 6.7375 4.0010 -2.8652 14 1 6.9650 4.9815 -3.2834 15 6 6.5345 3.0126 -3.9845 16 1 5.5904 2.4981 -4.0860 17 6 7.5540 2.7653 -4.8791 18 7 7.3768 1.9031 -5.8562 19 14 9.1873 3.6548 -4.7033 20 1 10.0923 2.8609 -3.8338 21 1 9.8072 3.8207 -6.0424 22 1 8.9606 4.9899 -4.0938 23 6 5.4623 4.0882 -2.0242 24 6 3.5883 1.4835 -0.0323 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.6929 2.6172 -1.2633 31 1 1.7293 1.4646 -2.1666 32 1 2.4001 4.1917 -1.0747 33 1 3.0823 3.3417 -2.4894 34 1 6.0784 1.2705 -0.1376 35 1 6.4520 2.9660 0.2546 36 1 8.4088 1.8367 -0.7677 37 1 7.4338 1.4493 -2.2059 38 1 8.0466 4.2556 -1.1733 39 1 8.8084 3.4788 -2.5817 40 1 8.0942 1.7288 -6.4854 41 1 5.6092 4.8030 -1.2146 42 1 4.6342 4.4156 -2.6528 43 1 3.9766 0.6753 -0.6521 44 1 3.9909 1.4151 0.9783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:19 Heat of formation + Delta-G solvation = -38.479979 kcal Electronic energy + Delta-G solvation = -19831.940980 eV Core-core repulsion = 17168.083969 eV Total energy + Delta-G solvation = -2663.857010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83716 -38.74184 -35.33881 -34.24217 -32.12656 -31.62121 -29.74346 -28.44618 -26.78193 -24.08569 -23.61221 -22.56716 -21.36860 -20.89993 -20.33861 -18.13738 -17.20848 -16.96257 -16.48697 -15.88991 -15.26287 -15.02679 -14.82657 -14.54712 -14.41573 -14.26662 -13.98136 -13.75476 -13.38526 -13.16435 -12.96767 -12.72271 -12.60618 -12.28442 -12.12709 -11.98187 -11.92269 -11.74694 -11.66786 -11.47892 -11.43933 -11.33962 -10.95049 -10.78784 -10.65370 -10.53263 -9.17556 -8.24918 -6.25032 1.30732 1.35948 1.46000 2.35233 3.04657 3.12817 3.63350 3.77366 3.93256 4.04211 4.06483 4.26684 4.32219 4.41164 4.50074 4.55737 4.57271 4.62065 4.73840 4.74942 4.79304 4.81269 4.85845 4.94173 4.97107 4.99417 5.01407 5.03516 5.11118 5.20191 5.22008 5.25990 5.34623 5.40848 5.41796 5.49779 5.53955 5.58941 5.73004 5.83364 6.16594 6.26255 6.38441 6.79388 7.38533 8.91894 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032861 B = 0.005705 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.867431 B = 4906.756601 C = 5130.033453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.086 4.086 4 H 0.094 0.906 5 C -0.131 4.131 6 C 0.036 3.964 7 N -0.528 5.528 8 C 0.097 3.903 9 H 0.011 0.989 10 C -0.091 4.091 11 C -0.105 4.105 12 C -0.118 4.118 13 C 0.004 3.996 14 H 0.022 0.978 15 C -0.490 4.490 16 H 0.030 0.970 17 C 0.011 3.989 18 N -0.955 5.955 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.305 1.305 22 H -0.248 1.248 23 C -0.080 4.080 24 C 0.044 3.956 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 -0.137 14.937 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.112 0.888 5 C -0.169 4.169 6 C -0.092 4.092 7 N -0.252 5.252 8 C -0.011 4.011 9 H 0.029 0.971 10 C -0.129 4.129 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.016 4.016 14 H 0.040 0.960 15 C -0.528 4.528 16 H 0.048 0.952 17 C -0.184 4.184 18 N -0.596 5.596 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.233 1.233 22 H -0.172 1.172 23 C -0.118 4.118 24 C -0.084 4.084 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.105 0.161 15.190 17.711 hybrid contribution 0.822 -0.556 -1.677 1.949 sum -8.283 -0.395 13.513 15.855 Atomic orbital electron populations 1.21739 0.94586 1.02002 1.02147 1.21459 0.96907 0.94842 1.01851 1.22325 0.93637 0.96722 0.97856 0.88768 1.22815 0.99275 0.97315 0.97528 1.22858 0.90937 0.99475 0.95888 1.63705 1.02669 1.26724 1.32070 1.21571 0.90020 0.96585 0.92934 0.97059 1.21393 0.93238 1.00881 0.97366 1.21335 0.97412 0.97197 0.98406 1.21808 0.97644 0.97615 0.98424 1.19218 0.93521 0.95404 0.93421 0.96013 1.21179 0.98948 1.22527 1.10191 0.95221 1.25784 1.02268 0.95656 0.94734 1.70052 1.34543 1.37189 1.17837 0.85905 0.80316 0.80806 0.75732 1.19431 1.23295 1.17236 1.21323 0.96941 0.95925 0.97613 1.23144 0.96010 0.89492 0.99735 0.92222 0.91794 0.92985 0.93426 0.90895 0.89109 0.93054 0.89815 0.94851 0.92075 0.90546 0.91440 0.94284 0.91334 0.95192 0.92946 0.91562 0.94049 0.95367 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.76 71.98 0.70 -1.63 16 2 C -0.11 -2.15 5.45 30.59 0.17 -1.99 16 3 C -0.09 -1.89 3.07 -9.41 -0.03 -1.92 16 4 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 5 C -0.13 -3.22 5.58 31.78 0.18 -3.04 16 6 C 0.04 1.09 6.15 86.65 0.53 1.62 16 7 N -0.53 -16.73 5.03 -860.34 -4.33 -21.06 16 8 C 0.10 3.69 1.30 44.91 0.06 3.75 16 9 H 0.01 0.54 6.58 -2.39 -0.02 0.52 16 10 C -0.09 -3.12 5.09 30.60 0.16 -2.96 16 11 C -0.11 -4.11 5.70 30.60 0.17 -3.94 16 12 C -0.12 -4.86 4.94 30.59 0.15 -4.71 16 13 C 0.00 0.17 2.18 -11.54 -0.03 0.15 16 14 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 15 C -0.49 -27.71 7.19 25.60 0.18 -27.52 16 16 H 0.03 1.88 6.95 -2.91 -0.02 1.86 16 17 C 0.01 0.67 5.45 84.65 0.46 1.13 16 18 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 19 Si 0.94 45.83 24.37 68.60 1.67 47.51 16 20 H -0.27 -12.42 6.87 99.48 0.68 -11.74 16 21 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 22 H -0.25 -11.20 6.53 99.48 0.65 -10.55 16 23 C -0.08 -3.22 4.56 30.59 0.14 -3.08 16 24 C 0.04 1.19 4.86 86.78 0.42 1.61 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.86 7.50 -2.39 -0.02 0.84 16 28 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 31 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 32 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.03 1.19 6.34 -2.39 -0.02 1.18 16 34 H 0.06 1.92 7.04 -2.39 -0.02 1.91 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.04 1.82 7.22 -2.39 -0.02 1.80 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.04 1.72 6.49 -2.39 -0.02 1.70 16 43 H 0.03 0.87 7.48 -2.39 -0.02 0.85 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -64.00 315.19 1.77 -62.23 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.86 Total: 14.02 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.27 Total: -42.53 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -4.03 Total: -81.22 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.51 kcal Total: -64.00 1.77 -62.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.746 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds