Wall clock time and date at job start Mon Mar 30 2020 07:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46793 * 2 1 4 4 H 1.08998 * 110.76864 * 51.79497 * 3 2 1 5 5 C 1.55437 * 110.69300 * 288.61818 * 3 2 1 6 6 C 1.54908 * 101.52201 * 205.97784 * 5 3 2 7 7 N 1.47844 * 104.89257 * 37.06921 * 6 5 3 8 8 C 1.46901 * 110.99570 * 213.58044 * 7 6 5 9 9 H 1.08997 * 109.47222 * 58.88752 * 8 7 6 10 10 C 1.53000 * 109.46961 * 178.88392 * 8 7 6 11 11 C 1.52997 * 109.47448 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47196 * 300.00230 * 11 10 8 13 13 C 1.53000 * 109.47110 * 59.99563 * 12 11 10 14 14 H 1.09000 * 109.47478 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47246 * 60.00220 * 13 12 11 16 16 H 1.07996 * 120.00222 * 245.21922 * 15 13 12 17 17 C 1.37878 * 119.99705 * 65.21566 * 15 13 12 18 18 N 1.31515 * 120.00018 * 6.95131 * 17 15 13 19 19 Si 1.86802 * 119.99917 * 186.94790 * 17 15 13 20 20 H 1.48492 * 109.47232 * 84.99314 * 19 17 15 21 21 H 1.48492 * 109.47357 * 204.99789 * 19 17 15 22 22 H 1.48506 * 109.47024 * 324.99517 * 19 17 15 23 23 C 1.52997 * 109.47448 * 300.00283 * 13 12 11 24 24 C 1.47446 * 108.56555 * 335.84592 * 7 6 5 25 25 H 1.09007 * 109.46850 * 60.00349 * 1 2 3 26 26 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47325 * 300.00658 * 1 2 3 28 28 H 1.09002 * 109.47196 * 240.00176 * 2 1 3 29 29 H 1.08996 * 109.47097 * 119.99199 * 2 1 3 30 30 H 1.09005 * 111.10135 * 87.91091 * 5 3 2 31 31 H 1.09000 * 111.00323 * 324.00556 * 5 3 2 32 32 H 1.09000 * 110.37107 * 278.17850 * 6 5 3 33 33 H 1.08997 * 110.37125 * 155.95699 * 6 5 3 34 34 H 1.08996 * 109.47026 * 300.00134 * 10 8 7 35 35 H 1.09001 * 109.47302 * 60.00002 * 10 8 7 36 36 H 1.09001 * 109.46757 * 59.99803 * 11 10 8 37 37 H 1.08994 * 109.47754 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47355 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47251 * 299.99814 * 12 11 10 40 40 H 0.96998 * 119.99666 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.46757 * 300.00197 * 23 13 12 42 42 H 1.08994 * 109.47754 * 180.02562 * 23 13 12 43 43 H 1.09001 * 109.88474 * 120.40170 * 24 7 6 44 44 H 1.09003 * 109.88718 * 241.58498 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5745 2.0170 0.8009 5 6 1.7853 2.1151 -1.3780 6 6 2.8992 3.1912 -1.4076 7 7 4.0642 2.5501 -0.7614 8 6 4.8578 3.5335 -0.0124 9 1 4.2319 4.0037 0.7461 10 6 6.0361 2.8294 0.6636 11 6 6.8631 3.8537 1.4432 12 6 7.3901 4.9214 0.4824 13 6 6.2118 5.6254 -0.1935 14 1 6.5872 6.3864 -0.8777 15 6 5.3467 6.2761 0.8550 16 1 4.3360 5.9298 1.0122 17 6 5.8458 7.3136 1.6137 18 7 7.0239 7.8262 1.3328 19 14 4.8485 7.9912 3.0405 20 1 5.0997 7.1718 4.2532 21 1 5.2494 9.3970 3.3012 22 1 3.4035 7.9433 2.7013 23 6 5.3848 4.6012 -0.9732 24 6 3.5776 1.4776 0.1258 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.7975 2.5746 -1.4139 31 1 1.9114 1.4001 -2.1910 32 1 2.5905 4.0724 -0.8453 33 1 3.1374 3.4625 -2.4361 34 1 5.6607 2.0685 1.3478 35 1 6.6620 2.3592 -0.0948 36 1 6.2374 4.3243 2.2016 37 1 7.7023 3.3521 1.9252 38 1 7.9789 5.6513 1.0379 39 1 8.0157 4.4508 -0.2760 40 1 7.3748 8.5563 1.8663 41 1 6.0105 4.1306 -1.7315 42 1 4.5456 5.1028 -1.4551 43 1 3.9971 0.5207 -0.1847 44 1 3.8605 1.6921 1.1564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:22 Heat of formation + Delta-G solvation = -30.014601 kcal Electronic energy + Delta-G solvation = -19756.006109 eV Core-core repulsion = 17092.516185 eV Total energy + Delta-G solvation = -2663.489924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41693 -37.06888 -34.02761 -32.33395 -30.24805 -29.97384 -28.30914 -26.92813 -24.83196 -23.02553 -21.91990 -21.07903 -20.03339 -19.55974 -18.64600 -16.07782 -15.60965 -15.17943 -14.68283 -14.48007 -14.00419 -13.69653 -13.27093 -13.08403 -12.79246 -12.64291 -12.36241 -12.15252 -11.98187 -11.62761 -11.27819 -11.10885 -11.02458 -10.80628 -10.76272 -10.61426 -10.52133 -10.46370 -10.36396 -10.25461 -9.99776 -9.61839 -8.97903 -8.90464 -8.63733 -8.21531 -7.74766 -5.96179 -3.96754 3.31077 3.38198 3.40092 4.41813 4.46936 4.64584 4.78224 4.90495 5.20347 5.33842 5.36926 5.45826 5.57101 5.62499 5.72056 5.74754 5.80332 5.86846 5.89607 6.01265 6.08685 6.11351 6.16214 6.23721 6.28179 6.39705 6.46877 6.51958 6.59889 6.62854 6.79110 6.84130 6.86532 6.99663 7.19831 7.44185 7.49809 7.59029 7.72054 7.79498 7.99832 8.11400 8.52070 9.05770 9.65372 11.12883 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.005960 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.506572 B = 4697.023126 C = 5124.793411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.112 4.112 4 H 0.072 0.928 5 C -0.123 4.123 6 C 0.045 3.955 7 N -0.531 5.531 8 C 0.089 3.911 9 H 0.050 0.950 10 C -0.102 4.102 11 C -0.104 4.104 12 C -0.102 4.102 13 C 0.044 3.956 14 H 0.032 0.968 15 C -0.502 4.502 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.880 3.120 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.093 4.093 24 C 0.046 3.954 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.259 0.741 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -12.950 -2.625 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.131 4.131 4 H 0.090 0.910 5 C -0.161 4.161 6 C -0.083 4.083 7 N -0.255 5.255 8 C -0.018 4.018 9 H 0.068 0.932 10 C -0.139 4.139 11 C -0.142 4.142 12 C -0.140 4.140 13 C 0.025 3.975 14 H 0.050 0.950 15 C -0.540 4.540 16 H 0.070 0.930 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.708 3.292 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.131 4.131 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.001 -13.003 -2.944 15.549 hybrid contribution -1.017 0.840 1.558 2.041 sum -9.019 -12.163 -1.387 15.205 Atomic orbital electron populations 1.21776 0.96078 1.01199 1.01817 1.21476 0.95600 0.95908 1.01889 1.22514 0.96506 0.96250 0.97863 0.90965 1.22825 0.98319 0.98068 0.96861 1.22960 0.89436 0.95980 0.99944 1.63690 1.19640 1.11851 1.30314 1.21824 0.93975 0.91124 0.94871 0.93183 1.21546 0.96738 0.97332 0.98327 1.21389 0.97838 0.96075 0.98932 1.21440 0.98892 0.96508 0.97184 1.18693 0.92323 0.92027 0.94470 0.95024 1.21099 0.98743 1.15926 1.18280 0.93021 1.24922 0.95048 0.96322 0.97442 1.69939 1.18097 1.25516 1.39277 0.86809 0.80582 0.78217 0.83607 1.20712 1.21371 1.20182 1.21567 0.99076 0.95677 0.96827 1.22871 0.92630 0.96284 0.96453 0.92683 0.93066 0.92924 0.91819 0.92139 0.91491 0.91056 0.93405 0.90736 0.93845 0.92682 0.91398 0.94699 0.90914 0.96310 0.93159 0.94093 0.93739 0.91228 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 3 C -0.11 -1.37 2.93 -88.63 -0.26 -1.63 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.12 -1.50 5.94 -24.43 -0.15 -1.65 16 6 C 0.04 0.68 5.42 -2.30 -0.01 0.67 16 7 N -0.53 -8.86 5.03 -223.29 -1.12 -9.98 16 8 C 0.09 1.73 1.34 -67.71 -0.09 1.64 16 9 H 0.05 1.09 6.44 -51.93 -0.33 0.75 16 10 C -0.10 -1.90 5.04 -26.73 -0.13 -2.03 16 11 C -0.10 -2.18 5.70 -26.73 -0.15 -2.34 16 12 C -0.10 -2.39 5.29 -26.73 -0.14 -2.54 16 13 C 0.04 1.08 2.46 -91.77 -0.23 0.86 16 14 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 15 C -0.50 -13.40 6.64 -34.44 -0.23 -13.62 16 16 H 0.05 1.38 6.53 -52.49 -0.34 1.04 16 17 C 0.06 1.75 5.24 -17.82 -0.09 1.65 16 18 N -0.89 -25.46 12.02 55.43 0.67 -24.79 16 19 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.09 -1.99 4.62 -26.73 -0.12 -2.11 16 24 C 0.05 0.66 5.74 -2.83 -0.02 0.64 16 25 H 0.05 0.48 7.68 -51.93 -0.40 0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.63 8.00 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 32 H 0.05 0.80 7.65 -51.93 -0.40 0.41 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.74 6.38 -51.93 -0.33 0.41 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.55 7.22 -51.93 -0.37 1.18 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.90 6.78 -51.93 -0.35 1.55 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.94 7.15 -51.93 -0.37 0.57 16 43 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 44 H 0.05 0.83 6.21 -51.93 -0.32 0.51 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -27.39 323.02 -10.26 -37.64 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.24 Total: -1.27 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.40 Total: -22.69 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.46 Total: -34.77 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.39 -10.26 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.627 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds