Wall clock time and date at job start Mon Mar 30 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46793 * 2 1 4 4 H 1.08998 * 110.76864 * 51.79497 * 3 2 1 5 5 C 1.55437 * 110.69300 * 288.61818 * 3 2 1 6 6 C 1.54908 * 101.52201 * 205.97784 * 5 3 2 7 7 N 1.47844 * 104.89257 * 37.06921 * 6 5 3 8 8 C 1.46901 * 110.99570 * 213.58044 * 7 6 5 9 9 H 1.08997 * 109.47222 * 58.88752 * 8 7 6 10 10 C 1.53000 * 109.46961 * 178.88392 * 8 7 6 11 11 C 1.52997 * 109.47448 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47196 * 300.00230 * 11 10 8 13 13 C 1.53000 * 109.47110 * 59.99563 * 12 11 10 14 14 H 1.09000 * 109.47478 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47246 * 60.00220 * 13 12 11 16 16 H 1.07996 * 120.00222 * 245.21922 * 15 13 12 17 17 C 1.37878 * 119.99705 * 65.21566 * 15 13 12 18 18 N 1.31515 * 120.00018 * 6.95131 * 17 15 13 19 19 Si 1.86802 * 119.99917 * 186.94790 * 17 15 13 20 20 H 1.48492 * 109.47232 * 84.99314 * 19 17 15 21 21 H 1.48492 * 109.47357 * 204.99789 * 19 17 15 22 22 H 1.48506 * 109.47024 * 324.99517 * 19 17 15 23 23 C 1.52997 * 109.47448 * 300.00283 * 13 12 11 24 24 C 1.47446 * 108.56555 * 335.84592 * 7 6 5 25 25 H 1.09007 * 109.46850 * 60.00349 * 1 2 3 26 26 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47325 * 300.00658 * 1 2 3 28 28 H 1.09002 * 109.47196 * 240.00176 * 2 1 3 29 29 H 1.08996 * 109.47097 * 119.99199 * 2 1 3 30 30 H 1.09005 * 111.10135 * 87.91091 * 5 3 2 31 31 H 1.09000 * 111.00323 * 324.00556 * 5 3 2 32 32 H 1.09000 * 110.37107 * 278.17850 * 6 5 3 33 33 H 1.08997 * 110.37125 * 155.95699 * 6 5 3 34 34 H 1.08996 * 109.47026 * 300.00134 * 10 8 7 35 35 H 1.09001 * 109.47302 * 60.00002 * 10 8 7 36 36 H 1.09001 * 109.46757 * 59.99803 * 11 10 8 37 37 H 1.08994 * 109.47754 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47355 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47251 * 299.99814 * 12 11 10 40 40 H 0.96998 * 119.99666 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.46757 * 300.00197 * 23 13 12 42 42 H 1.08994 * 109.47754 * 180.02562 * 23 13 12 43 43 H 1.09001 * 109.88474 * 120.40170 * 24 7 6 44 44 H 1.09003 * 109.88718 * 241.58498 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5745 2.0170 0.8009 5 6 1.7853 2.1151 -1.3780 6 6 2.8992 3.1912 -1.4076 7 7 4.0642 2.5501 -0.7614 8 6 4.8578 3.5335 -0.0124 9 1 4.2319 4.0037 0.7461 10 6 6.0361 2.8294 0.6636 11 6 6.8631 3.8537 1.4432 12 6 7.3901 4.9214 0.4824 13 6 6.2118 5.6254 -0.1935 14 1 6.5872 6.3864 -0.8777 15 6 5.3467 6.2761 0.8550 16 1 4.3360 5.9298 1.0122 17 6 5.8458 7.3136 1.6137 18 7 7.0239 7.8262 1.3328 19 14 4.8485 7.9912 3.0405 20 1 5.0997 7.1718 4.2532 21 1 5.2494 9.3970 3.3012 22 1 3.4035 7.9433 2.7013 23 6 5.3848 4.6012 -0.9732 24 6 3.5776 1.4776 0.1258 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.7975 2.5746 -1.4139 31 1 1.9114 1.4001 -2.1910 32 1 2.5905 4.0724 -0.8453 33 1 3.1374 3.4625 -2.4361 34 1 5.6607 2.0685 1.3478 35 1 6.6620 2.3592 -0.0948 36 1 6.2374 4.3243 2.2016 37 1 7.7023 3.3521 1.9252 38 1 7.9789 5.6513 1.0379 39 1 8.0157 4.4508 -0.2760 40 1 7.3748 8.5563 1.8663 41 1 6.0105 4.1306 -1.7315 42 1 4.5456 5.1028 -1.4551 43 1 3.9971 0.5207 -0.1847 44 1 3.8605 1.6921 1.1564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:21 Heat of formation + Delta-G solvation = -44.209179 kcal Electronic energy + Delta-G solvation = -19756.621632 eV Core-core repulsion = 17092.516185 eV Total energy + Delta-G solvation = -2664.105447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76787 -38.58512 -35.30774 -34.14062 -31.76529 -31.52455 -29.54574 -28.28625 -26.88280 -24.04345 -23.37305 -22.56828 -21.36751 -20.84267 -20.41348 -17.77808 -17.28026 -16.67942 -16.13815 -15.88891 -15.12020 -14.99568 -14.83819 -14.65531 -14.34612 -13.98073 -13.60082 -13.44602 -13.33421 -12.94620 -12.89230 -12.87894 -12.46615 -12.45614 -12.21704 -12.05498 -11.97819 -11.84028 -11.57503 -11.47871 -11.38087 -11.25322 -10.85412 -10.78935 -10.55343 -10.25500 -9.12426 -8.08695 -6.14744 1.37401 1.39010 1.46764 2.43143 3.10419 3.22976 3.65832 3.80362 3.90878 4.11821 4.12984 4.39794 4.43301 4.46953 4.51451 4.57567 4.62541 4.70972 4.78590 4.83109 4.90113 4.94228 4.96050 5.00040 5.01969 5.06740 5.11674 5.14613 5.17732 5.21835 5.28314 5.33055 5.40973 5.44663 5.55471 5.62961 5.68205 5.72429 5.94048 6.06850 6.23168 6.32478 6.43757 6.94846 7.50130 9.00111 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.005960 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.506572 B = 4697.023126 C = 5124.793411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.107 4.107 4 H 0.063 0.937 5 C -0.112 4.112 6 C 0.039 3.961 7 N -0.533 5.533 8 C 0.101 3.899 9 H 0.023 0.977 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.097 4.097 13 C 0.040 3.960 14 H -0.007 1.007 15 C -0.505 4.505 16 H 0.047 0.953 17 C 0.016 3.984 18 N -0.920 5.920 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.084 4.084 24 C 0.042 3.958 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.258 0.742 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.084 0.916 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -15.210 -2.440 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.089 4.089 7 N -0.257 5.257 8 C -0.007 4.007 9 H 0.041 0.959 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.135 4.135 13 C 0.021 3.979 14 H 0.011 0.989 15 C -0.543 4.543 16 H 0.065 0.935 17 C -0.182 4.182 18 N -0.560 5.560 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.122 4.122 24 C -0.085 4.085 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.372 -15.277 -2.762 18.134 hybrid contribution -0.583 1.560 1.444 2.205 sum -9.955 -13.717 -1.317 17.000 Atomic orbital electron populations 1.21764 0.95167 1.02046 1.01772 1.21437 0.96332 0.94089 1.02457 1.22481 0.94894 0.97820 0.97475 0.91841 1.22789 0.97680 0.97189 0.97308 1.23018 0.90224 0.96325 0.99319 1.63671 1.20376 1.11393 1.30288 1.21549 0.94269 0.91197 0.93726 0.95919 1.21471 0.96112 0.96933 0.98621 1.21299 0.98492 0.95863 0.98007 1.21314 0.98075 0.96535 0.97593 1.18669 0.93190 0.92239 0.93848 0.98888 1.21299 0.98648 1.15873 1.18523 0.93502 1.25603 0.96020 0.96844 0.99708 1.70066 1.19559 1.26066 1.40301 0.85882 0.79330 0.77554 0.80827 1.20060 1.21176 1.19689 1.21396 0.98383 0.95508 0.96909 1.22971 0.94301 0.95741 0.95506 0.92521 0.91812 0.93221 0.91190 0.91645 0.90161 0.89776 0.95560 0.90763 0.91583 0.91770 0.93764 0.92506 0.94139 0.95002 0.93273 0.93375 0.94418 0.89816 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.80 71.98 0.71 -1.51 16 2 C -0.11 -1.77 5.29 30.60 0.16 -1.61 16 3 C -0.11 -2.37 2.93 -9.51 -0.03 -2.39 16 4 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 5 C -0.11 -2.47 5.94 32.08 0.19 -2.28 16 6 C 0.04 1.15 5.42 86.77 0.47 1.62 16 7 N -0.53 -16.99 5.03 -860.36 -4.33 -21.32 16 8 C 0.10 3.84 1.34 44.92 0.06 3.90 16 9 H 0.02 1.00 6.44 -2.39 -0.02 0.98 16 10 C -0.09 -3.34 5.04 30.59 0.15 -3.19 16 11 C -0.10 -4.06 5.70 30.59 0.17 -3.88 16 12 C -0.10 -4.61 5.29 30.59 0.16 -4.45 16 13 C 0.04 2.02 2.46 -11.54 -0.03 1.99 16 14 H -0.01 -0.41 8.11 -2.39 -0.02 -0.43 16 15 C -0.51 -27.64 6.64 25.60 0.17 -27.47 16 16 H 0.05 2.57 6.53 -2.91 -0.02 2.55 16 17 C 0.02 0.92 5.24 84.65 0.44 1.36 16 18 N -0.92 -54.16 12.02 21.45 0.26 -53.90 16 19 Si 0.94 44.15 29.54 68.60 2.03 46.18 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.08 -3.61 4.62 30.59 0.14 -3.47 16 24 C 0.04 1.12 5.74 86.65 0.50 1.62 16 25 H 0.06 0.82 7.68 -2.38 -0.02 0.80 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.12 8.00 -2.39 -0.02 1.10 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.08 1.68 7.95 -2.39 -0.02 1.66 16 32 H 0.03 0.88 7.65 -2.39 -0.02 0.86 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.08 6.38 -2.39 -0.02 2.07 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.04 2.02 7.22 -2.39 -0.02 2.00 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 2.17 6.78 -2.39 -0.02 2.15 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.63 7.15 -2.39 -0.02 1.61 16 43 H 0.08 2.00 7.82 -2.39 -0.02 1.99 16 44 H 0.05 1.32 6.21 -2.39 -0.01 1.31 16 Total: -1.00 -59.52 323.02 2.16 -57.36 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.93 Total: 11.45 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.28 Total: -39.77 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -4.07 Total: -75.22 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -59.52 2.16 -57.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.153 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds