Wall clock time and date at job start Mon Mar 30 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 H 1.08995 * 110.27167 * 54.30368 * 3 2 1 5 5 C 1.54591 * 110.31137 * 292.21025 * 3 2 1 6 6 C 1.55103 * 102.84587 * 219.18528 * 5 3 2 7 7 N 1.48527 * 103.28079 * 37.30853 * 6 5 3 8 8 C 1.46900 * 110.99829 * 200.32900 * 7 6 5 9 9 H 1.09006 * 109.47525 * 173.22508 * 8 7 6 10 10 C 1.53005 * 109.47102 * 53.22771 * 8 7 6 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47091 * 60.00129 * 11 10 8 13 13 C 1.53006 * 109.47023 * 299.99363 * 12 11 10 14 14 C 1.52998 * 109.47549 * 293.22588 * 8 7 6 15 15 H 1.09004 * 109.47090 * 59.99886 * 14 8 7 16 16 C 1.50706 * 109.47134 * 299.99854 * 14 8 7 17 17 H 1.07999 * 119.99819 * 0.02562 * 16 14 8 18 18 C 1.37873 * 119.99748 * 179.97438 * 16 14 8 19 19 N 1.31505 * 120.00350 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99531 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47275 * 90.00165 * 20 18 16 22 22 H 1.48502 * 109.47277 * 210.00102 * 20 18 16 23 23 H 1.48497 * 109.47540 * 330.00157 * 20 18 16 24 24 C 1.47893 * 105.82371 * 320.84370 * 7 6 5 25 25 H 1.09005 * 109.47086 * 59.99534 * 1 2 3 26 26 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47036 * 300.00051 * 1 2 3 28 28 H 1.09005 * 109.46747 * 240.00484 * 2 1 3 29 29 H 1.08992 * 109.47209 * 120.00688 * 2 1 3 30 30 H 1.09002 * 110.72485 * 337.48722 * 5 3 2 31 31 H 1.09000 * 110.72252 * 100.77084 * 5 3 2 32 32 H 1.08991 * 110.59724 * 278.87609 * 6 5 3 33 33 H 1.09002 * 110.82403 * 155.84851 * 6 5 3 34 34 H 1.09006 * 109.46715 * 300.00232 * 10 8 7 35 35 H 1.08994 * 109.46973 * 59.99706 * 10 8 7 36 36 H 1.08994 * 109.47128 * 299.99716 * 11 10 8 37 37 H 1.09003 * 109.46790 * 179.97438 * 11 10 8 38 38 H 1.09007 * 109.46871 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47471 * 59.99797 * 12 11 10 40 40 H 1.08994 * 109.47351 * 300.00507 * 13 12 11 41 41 H 1.08998 * 109.46673 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00365 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.91832 * 265.97900 * 24 7 6 44 44 H 1.08999 * 109.92222 * 144.68348 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9974 0.8303 5 6 1.7022 2.1311 -1.3422 6 6 2.9722 2.9750 -1.6261 7 7 4.0752 2.1032 -1.1473 8 6 5.2894 2.8871 -0.8842 9 1 6.0418 2.2477 -0.4224 10 6 4.9549 4.0443 0.0593 11 6 6.2197 4.8604 0.3338 12 6 6.7632 5.4172 -0.9835 13 6 7.0978 4.2600 -1.9269 14 6 5.8325 3.4440 -2.2017 15 1 5.0802 4.0834 -2.6635 16 6 6.1620 2.3042 -3.1309 17 1 5.9999 1.2847 -2.8137 18 6 6.6695 2.5631 -4.3864 19 7 6.8665 3.8046 -4.7729 20 14 7.0786 1.1503 -5.5380 21 1 5.8865 0.8203 -6.3597 22 1 8.1994 1.5459 -6.4283 23 1 7.4753 -0.0386 -4.7415 24 6 3.5771 1.4660 0.0909 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.5477 1.3910 -2.1273 31 1 0.8268 2.7721 -1.2373 32 1 2.9467 3.9077 -1.0626 33 1 3.0746 3.1742 -2.6929 34 1 4.2025 4.6837 -0.4025 35 1 4.5681 3.6476 0.9979 36 1 6.9716 4.2207 0.7958 37 1 5.9812 5.6850 1.0056 38 1 7.6646 5.9982 -0.7879 39 1 6.0113 6.0568 -1.4454 40 1 7.8498 3.6204 -1.4649 41 1 7.4855 4.6568 -2.8652 42 1 7.2232 3.9868 -5.6564 43 1 3.8889 2.0470 0.9589 44 1 3.9602 0.4483 0.1649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:04 Heat of formation + Delta-G solvation = -21.661945 kcal Electronic energy + Delta-G solvation = -19989.321250 eV Core-core repulsion = 17326.193525 eV Total energy + Delta-G solvation = -2663.127726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42858 -36.87916 -33.67534 -32.73386 -30.30848 -29.40859 -28.37734 -26.99784 -24.46651 -22.79935 -22.23005 -20.89244 -20.09042 -19.50718 -18.15569 -16.28211 -15.64835 -14.83751 -14.48671 -14.29785 -13.89321 -13.61565 -13.55078 -13.12345 -12.75927 -12.63658 -12.08850 -12.00932 -11.74264 -11.66269 -11.32195 -11.02505 -10.87041 -10.82324 -10.57784 -10.47229 -10.38479 -10.24086 -10.19408 -10.08038 -9.88106 -9.69040 -9.41520 -8.84129 -8.57585 -8.15770 -7.37766 -5.81509 -3.82678 3.41291 3.47452 3.52120 4.58697 4.74560 4.88550 4.99261 5.08577 5.40545 5.42840 5.50506 5.53133 5.60804 5.63611 5.75948 5.79354 5.83189 5.93897 6.04096 6.06393 6.11507 6.22368 6.23361 6.31111 6.34891 6.40393 6.43550 6.48429 6.52712 6.62635 6.69057 6.72365 6.82881 6.94780 7.10247 7.26567 7.45444 7.76316 7.86922 7.96427 8.15589 8.31879 8.67378 9.21907 9.79350 11.24887 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.007956 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.343001 B = 3518.472884 C = 4702.442639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.097 4.097 4 H 0.064 0.936 5 C -0.117 4.117 6 C 0.034 3.966 7 N -0.486 5.486 8 C 0.087 3.913 9 H 0.066 0.934 10 C -0.153 4.153 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.112 4.112 14 C 0.063 3.937 15 H 0.025 0.975 16 C -0.481 4.481 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.887 3.113 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.031 3.969 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.255 0.745 43 H 0.039 0.961 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 -1.635 9.947 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.083 0.917 5 C -0.156 4.156 6 C -0.093 4.093 7 N -0.208 5.208 8 C -0.021 4.021 9 H 0.084 0.916 10 C -0.192 4.192 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.150 4.150 14 C 0.044 3.956 15 H 0.043 0.957 16 C -0.519 4.519 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.201 1.201 24 C -0.097 4.097 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.222 -1.956 9.397 12.638 hybrid contribution 0.082 -0.065 0.009 0.105 sum -8.139 -2.021 9.406 12.602 Atomic orbital electron populations 1.21779 0.96330 1.01076 1.01612 1.21579 0.95289 0.96198 1.02018 1.22015 0.95627 0.96071 0.97872 0.91705 1.22597 0.97291 0.98935 0.96728 1.23276 0.89769 0.94528 1.01764 1.64967 1.03228 1.28430 1.24188 1.22024 0.91118 0.91379 0.97610 0.91593 1.22291 0.98152 0.99472 0.99314 1.21422 0.97153 0.98278 0.97786 1.21645 0.99056 0.99353 0.95698 1.21653 0.99540 0.94814 0.99010 1.18639 0.92902 0.94662 0.89353 0.95725 1.21168 1.39598 0.93155 0.97991 0.92084 1.24946 0.96356 0.95124 0.98072 1.69876 1.46965 1.17849 1.19377 0.86676 0.77680 0.83071 0.80982 1.21049 1.21725 1.20141 1.23006 0.93450 1.00050 0.93240 0.92607 0.93193 0.93215 0.91406 0.92462 0.90956 0.92170 0.94015 0.89626 0.92053 0.93599 0.92820 0.93854 0.94030 0.93152 0.94874 0.88842 0.93461 0.94312 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.77 37.16 0.36 -1.18 16 2 C -0.11 -1.35 5.09 -26.73 -0.14 -1.49 16 3 C -0.10 -1.31 3.01 -89.26 -0.27 -1.58 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.12 -1.71 5.81 -24.78 -0.14 -1.85 16 6 C 0.03 0.62 5.47 -1.81 -0.01 0.61 16 7 N -0.49 -9.44 4.79 -222.40 -1.07 -10.50 16 8 C 0.09 1.79 1.60 -67.71 -0.11 1.68 16 9 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 10 C -0.15 -2.72 4.49 -26.73 -0.12 -2.84 16 11 C -0.11 -1.86 5.92 -26.73 -0.16 -2.02 16 12 C -0.12 -2.33 5.92 -26.73 -0.16 -2.49 16 13 C -0.11 -2.62 4.98 -26.70 -0.13 -2.75 16 14 C 0.06 1.53 1.50 -91.74 -0.14 1.40 16 15 H 0.02 0.66 7.13 -51.93 -0.37 0.29 16 16 C -0.48 -13.13 8.19 -34.44 -0.28 -13.41 16 17 H 0.06 1.71 7.67 -52.49 -0.40 1.31 16 18 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 19 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.03 0.49 6.14 -2.76 -0.02 0.48 16 25 H 0.05 0.58 7.52 -51.93 -0.39 0.19 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.09 7.79 -51.93 -0.40 0.68 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.73 5.41 -51.93 -0.28 0.45 16 33 H 0.09 1.75 7.71 -51.93 -0.40 1.35 16 34 H 0.06 1.11 5.95 -51.93 -0.31 0.80 16 35 H 0.05 0.74 6.19 -51.93 -0.32 0.42 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.48 6.08 -51.93 -0.32 2.16 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.04 0.60 5.77 -51.93 -0.30 0.30 16 44 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -27.77 320.95 -10.12 -37.90 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.10 Total: 0.14 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.40 Total: -24.03 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.44 Total: -35.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.77 -10.12 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.234 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds