Wall clock time and date at job start Mon Mar 30 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 H 1.08995 * 110.27167 * 54.30368 * 3 2 1 5 5 C 1.54591 * 110.31137 * 292.21025 * 3 2 1 6 6 C 1.55103 * 102.84587 * 219.18528 * 5 3 2 7 7 N 1.48527 * 103.28079 * 37.30853 * 6 5 3 8 8 C 1.46900 * 110.99829 * 200.32900 * 7 6 5 9 9 H 1.09006 * 109.47525 * 173.22508 * 8 7 6 10 10 C 1.53005 * 109.47102 * 53.22771 * 8 7 6 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47091 * 60.00129 * 11 10 8 13 13 C 1.53006 * 109.47023 * 299.99363 * 12 11 10 14 14 C 1.52998 * 109.47549 * 293.22588 * 8 7 6 15 15 H 1.09004 * 109.47090 * 59.99886 * 14 8 7 16 16 C 1.50706 * 109.47134 * 299.99854 * 14 8 7 17 17 H 1.07999 * 119.99819 * 0.02562 * 16 14 8 18 18 C 1.37873 * 119.99748 * 179.97438 * 16 14 8 19 19 N 1.31505 * 120.00350 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99531 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47275 * 90.00165 * 20 18 16 22 22 H 1.48502 * 109.47277 * 210.00102 * 20 18 16 23 23 H 1.48497 * 109.47540 * 330.00157 * 20 18 16 24 24 C 1.47893 * 105.82371 * 320.84370 * 7 6 5 25 25 H 1.09005 * 109.47086 * 59.99534 * 1 2 3 26 26 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47036 * 300.00051 * 1 2 3 28 28 H 1.09005 * 109.46747 * 240.00484 * 2 1 3 29 29 H 1.08992 * 109.47209 * 120.00688 * 2 1 3 30 30 H 1.09002 * 110.72485 * 337.48722 * 5 3 2 31 31 H 1.09000 * 110.72252 * 100.77084 * 5 3 2 32 32 H 1.08991 * 110.59724 * 278.87609 * 6 5 3 33 33 H 1.09002 * 110.82403 * 155.84851 * 6 5 3 34 34 H 1.09006 * 109.46715 * 300.00232 * 10 8 7 35 35 H 1.08994 * 109.46973 * 59.99706 * 10 8 7 36 36 H 1.08994 * 109.47128 * 299.99716 * 11 10 8 37 37 H 1.09003 * 109.46790 * 179.97438 * 11 10 8 38 38 H 1.09007 * 109.46871 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47471 * 59.99797 * 12 11 10 40 40 H 1.08994 * 109.47351 * 300.00507 * 13 12 11 41 41 H 1.08998 * 109.46673 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00365 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.91832 * 265.97900 * 24 7 6 44 44 H 1.08999 * 109.92222 * 144.68348 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9974 0.8303 5 6 1.7022 2.1311 -1.3422 6 6 2.9722 2.9750 -1.6261 7 7 4.0752 2.1032 -1.1473 8 6 5.2894 2.8871 -0.8842 9 1 6.0418 2.2477 -0.4224 10 6 4.9549 4.0443 0.0593 11 6 6.2197 4.8604 0.3338 12 6 6.7632 5.4172 -0.9835 13 6 7.0978 4.2600 -1.9269 14 6 5.8325 3.4440 -2.2017 15 1 5.0802 4.0834 -2.6635 16 6 6.1620 2.3042 -3.1309 17 1 5.9999 1.2847 -2.8137 18 6 6.6695 2.5631 -4.3864 19 7 6.8665 3.8046 -4.7729 20 14 7.0786 1.1503 -5.5380 21 1 5.8865 0.8203 -6.3597 22 1 8.1994 1.5459 -6.4283 23 1 7.4753 -0.0386 -4.7415 24 6 3.5771 1.4660 0.0909 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.5477 1.3910 -2.1273 31 1 0.8268 2.7721 -1.2373 32 1 2.9467 3.9077 -1.0626 33 1 3.0746 3.1742 -2.6929 34 1 4.2025 4.6837 -0.4025 35 1 4.5681 3.6476 0.9979 36 1 6.9716 4.2207 0.7958 37 1 5.9812 5.6850 1.0056 38 1 7.6646 5.9982 -0.7879 39 1 6.0113 6.0568 -1.4454 40 1 7.8498 3.6204 -1.4649 41 1 7.4855 4.6568 -2.8652 42 1 7.2232 3.9868 -5.6564 43 1 3.8889 2.0470 0.9589 44 1 3.9602 0.4483 0.1649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:03 Heat of formation + Delta-G solvation = -36.354133 kcal Electronic energy + Delta-G solvation = -19989.958351 eV Core-core repulsion = 17326.193525 eV Total energy + Delta-G solvation = -2663.764827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88284 -38.32795 -34.97912 -34.68435 -31.65537 -31.21709 -29.68973 -28.40993 -26.43311 -23.96447 -23.58669 -22.59515 -21.58043 -20.72797 -19.78016 -18.29301 -17.18421 -16.42614 -16.08185 -15.47889 -15.33799 -15.18445 -14.85760 -14.58384 -14.23356 -13.98393 -13.94054 -13.26198 -13.08951 -13.06205 -12.83919 -12.62928 -12.50910 -12.32255 -12.10433 -11.96454 -11.82509 -11.75168 -11.62419 -11.49733 -11.38414 -11.20755 -11.07304 -10.67373 -10.49691 -10.27155 -8.85173 -7.96821 -6.04627 1.40771 1.41912 1.51737 2.49907 3.25476 3.39291 3.76331 3.86274 3.95576 4.00540 4.14711 4.29053 4.42196 4.46081 4.53282 4.57574 4.61520 4.67867 4.74485 4.80742 4.84634 4.90655 4.96475 5.02842 5.07728 5.10367 5.14422 5.16780 5.24975 5.28225 5.32053 5.38542 5.44601 5.46948 5.48067 5.58263 5.63672 5.80231 6.05503 6.16020 6.35522 6.52292 6.63898 7.05432 7.59903 9.07178 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.007956 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.343001 B = 3518.472884 C = 4702.442639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.088 4.088 4 H 0.086 0.914 5 C -0.109 4.109 6 C 0.035 3.965 7 N -0.516 5.516 8 C 0.095 3.905 9 H 0.052 0.948 10 C -0.145 4.145 11 C -0.103 4.103 12 C -0.114 4.114 13 C -0.108 4.108 14 C 0.066 3.934 15 H -0.008 1.008 16 C -0.491 4.491 17 H 0.047 0.953 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.942 3.058 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.031 3.969 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -1.956 12.134 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.107 4.107 4 H 0.104 0.896 5 C -0.147 4.147 6 C -0.093 4.093 7 N -0.238 5.238 8 C -0.014 4.014 9 H 0.070 0.930 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.147 4.147 14 C 0.047 3.953 15 H 0.010 0.990 16 C -0.529 4.529 17 H 0.066 0.934 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.770 3.230 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.097 4.097 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.446 -2.286 11.591 15.126 hybrid contribution 0.478 0.017 -0.710 0.856 sum -8.968 -2.269 10.881 14.282 Atomic orbital electron populations 1.21746 0.94719 1.01912 1.02048 1.21544 0.96653 0.94949 1.01685 1.21997 0.93746 0.97266 0.97654 0.89584 1.22550 0.96353 0.98570 0.97203 1.23193 0.91174 0.95460 0.99434 1.64815 1.03430 1.28924 1.26645 1.21733 0.91500 0.92303 0.95866 0.92958 1.22185 0.98511 0.98217 0.99413 1.21402 0.96772 0.99266 0.96690 1.21545 0.99830 0.97687 0.96059 1.21482 0.98707 0.96064 0.98405 1.18526 0.92490 0.93406 0.90886 0.99003 1.21425 1.39167 0.93451 0.98889 0.93430 1.25615 0.96610 0.97177 0.99568 1.70014 1.47695 1.19309 1.19549 0.85794 0.77444 0.80569 0.79204 1.20855 1.21249 1.19765 1.23056 0.95273 0.99473 0.91866 0.92931 0.92267 0.91972 0.93217 0.91389 0.91952 0.89737 0.93278 0.93546 0.92432 0.91110 0.92211 0.90594 0.92253 0.93890 0.95614 0.92442 0.93632 0.93297 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.77 71.98 0.70 -1.87 16 2 C -0.11 -2.39 5.09 30.60 0.16 -2.23 16 3 C -0.09 -2.15 3.01 -9.91 -0.03 -2.18 16 4 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 5 C -0.11 -3.01 5.81 31.86 0.19 -2.83 16 6 C 0.04 1.27 5.47 86.71 0.47 1.74 16 7 N -0.52 -20.06 4.79 -857.54 -4.11 -24.17 16 8 C 0.09 3.91 1.60 44.92 0.07 3.98 16 9 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 10 C -0.14 -4.84 4.49 30.60 0.14 -4.70 16 11 C -0.10 -3.27 5.92 30.59 0.18 -3.09 16 12 C -0.11 -4.32 5.92 30.60 0.18 -4.14 16 13 C -0.11 -5.19 4.98 30.61 0.15 -5.04 16 14 C 0.07 3.30 1.50 -11.52 -0.02 3.29 16 15 H -0.01 -0.46 7.13 -2.38 -0.02 -0.48 16 16 C -0.49 -27.82 8.19 25.60 0.21 -27.61 16 17 H 0.05 2.76 7.67 -2.91 -0.02 2.74 16 18 C 0.01 0.39 5.30 84.66 0.45 0.83 16 19 N -0.92 -55.05 11.32 21.44 0.24 -54.81 16 20 Si 0.94 46.05 29.54 68.60 2.03 48.08 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 C 0.03 0.94 6.14 86.45 0.53 1.47 16 25 H 0.05 0.95 7.52 -2.38 -0.02 0.93 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.25 8.03 -2.38 -0.02 1.23 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.84 7.79 -2.39 -0.02 1.83 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.68 5.41 -2.39 -0.01 1.67 16 33 H 0.05 2.00 7.71 -2.39 -0.02 1.98 16 34 H 0.06 1.99 5.95 -2.38 -0.01 1.97 16 35 H 0.07 2.05 6.19 -2.39 -0.01 2.03 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 3.17 6.08 -2.39 -0.01 3.15 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.05 1.38 5.77 -2.39 -0.01 1.37 16 44 H 0.07 2.02 7.68 -2.39 -0.02 2.01 16 Total: -1.00 -62.03 320.95 2.48 -59.55 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.72 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.38 Total: -42.38 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -3.87 Total: -78.97 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -62.03 2.48 -59.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.196 kcal (2) G-P(sol) polarization free energy of solvation -62.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds