Wall clock time and date at job start Mon Mar 30 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47656 * 2 1 4 4 H 1.09002 * 109.46950 * 304.38837 * 3 2 1 5 5 C 1.50696 * 109.47492 * 184.38168 * 3 2 1 6 6 H 1.07996 * 120.00074 * 240.00483 * 5 3 2 7 7 C 1.37878 * 119.99841 * 60.27486 * 5 3 2 8 8 N 1.31513 * 119.99783 * 359.72370 * 7 5 3 9 9 Si 1.86801 * 119.99805 * 179.72599 * 7 5 3 10 10 H 1.48500 * 109.47351 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46860 * 119.99870 * 9 7 5 12 12 H 1.48496 * 109.47168 * 240.00013 * 9 7 5 13 13 N 1.46903 * 109.46972 * 64.38001 * 3 2 1 14 14 C 1.46900 * 111.00126 * 205.78929 * 13 3 2 15 15 C 1.52995 * 109.47193 * 174.88537 * 14 13 3 16 16 H 1.09004 * 109.64133 * 55.41885 * 15 14 13 17 17 C 1.53019 * 109.64223 * 294.99760 * 15 14 13 18 18 C 1.50068 * 110.14687 * 190.88004 * 17 15 14 19 19 C 1.50704 * 117.96392 * 197.11056 * 18 17 15 20 20 C 1.29446 * 124.07680 * 17.12838 * 18 17 15 21 21 C 1.50062 * 124.07330 * 359.55508 * 20 18 17 22 22 H 1.08996 * 109.36307 * 256.89388 * 21 20 18 23 23 C 1.53010 * 109.35762 * 137.31570 * 21 20 18 24 24 C 1.53011 * 110.15562 * 17.09466 * 21 20 18 25 25 H 1.09001 * 109.47256 * 174.12061 * 1 2 3 26 26 H 1.09000 * 109.46807 * 294.12202 * 1 2 3 27 27 H 1.08996 * 109.46854 * 54.11819 * 1 2 3 28 28 H 1.09001 * 109.46809 * 239.99492 * 2 1 3 29 29 H 1.09009 * 109.46861 * 120.00569 * 2 1 3 30 30 H 0.97007 * 119.99671 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00351 * 81.82964 * 13 3 2 32 32 H 1.09007 * 109.46983 * 294.88521 * 14 13 3 33 33 H 1.08997 * 109.47311 * 54.87994 * 14 13 3 34 34 H 1.09000 * 109.35822 * 311.08265 * 17 15 14 35 35 H 1.09000 * 109.36245 * 70.81419 * 17 15 14 36 36 H 1.09001 * 109.47367 * 89.99679 * 19 18 17 37 37 H 1.08996 * 109.47121 * 210.00413 * 19 18 17 38 38 H 1.09003 * 109.46702 * 329.99928 * 19 18 17 39 39 H 1.08005 * 117.96485 * 179.52882 * 20 18 17 40 40 H 1.09000 * 109.47119 * 59.99465 * 23 21 20 41 41 H 1.08993 * 109.46865 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.46771 * 299.99916 * 23 21 20 43 43 H 1.09005 * 109.64717 * 190.89740 * 24 21 20 44 44 H 1.08999 * 109.62607 * 70.27775 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6141 1.9784 -0.8481 5 6 3.5432 1.4437 -0.1085 6 1 4.1406 1.8910 0.6721 7 6 4.1555 0.8789 -1.2072 8 7 3.4280 0.3341 -2.1578 9 14 6.0184 0.8874 -1.3454 10 1 6.6002 1.5550 -0.1534 11 1 6.5155 -0.5100 -1.4214 12 1 6.4205 1.6231 -2.5710 13 7 1.6388 2.1037 1.2489 14 6 1.5437 3.5583 1.0673 15 6 1.0023 4.1977 2.3475 16 1 1.6289 3.9127 3.1927 17 6 -0.4335 3.7275 2.5899 18 6 -1.0662 4.5402 3.6813 19 6 -2.3099 3.9968 4.3365 20 6 -0.6105 5.6790 4.0947 21 6 0.6197 6.3412 3.5470 22 1 1.4444 6.2068 4.2468 23 6 0.3521 7.8366 3.3644 24 6 0.9941 5.7243 2.1977 25 1 -0.3634 -1.0223 -0.1053 26 1 -0.3633 0.4200 0.9379 27 1 -0.3633 0.6023 -0.8326 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5140 0.8900 30 1 3.8589 -0.0636 -2.9306 31 1 2.2724 1.8736 1.9997 32 1 2.5323 3.9626 0.8492 33 1 0.8705 3.7778 0.2387 34 1 -1.0111 3.8424 1.6727 35 1 -0.4253 2.6775 2.8826 36 1 -2.0307 3.3808 5.1913 37 1 -2.9342 4.8243 4.6734 38 1 -2.8642 3.3923 3.6186 39 1 -1.1494 6.1843 4.8826 40 1 0.0973 8.2803 4.3269 41 1 1.2445 8.3193 2.9662 42 1 -0.4763 7.9753 2.6697 43 1 1.9844 6.0686 1.8995 44 1 0.2602 6.0149 1.4461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300011901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:18 Heat of formation + Delta-G solvation = -39.050792 kcal Electronic energy + Delta-G solvation = -19067.957932 eV Core-core repulsion = 16404.076169 eV Total energy + Delta-G solvation = -2663.881763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18652 -37.88832 -35.01442 -34.30082 -33.50789 -31.72194 -28.45420 -27.59654 -27.34198 -25.74525 -24.16691 -22.01451 -21.64786 -21.05504 -18.77051 -18.44370 -16.80872 -16.44964 -16.02948 -15.57628 -15.21814 -14.92154 -14.83117 -14.46132 -14.33936 -13.89770 -13.44024 -13.27148 -13.22918 -13.11475 -12.99929 -12.91224 -12.83747 -12.59777 -12.40959 -12.23063 -12.13087 -11.94309 -11.61901 -11.52482 -11.49964 -11.07089 -10.99669 -10.75797 -10.46890 -9.51428 -9.00427 -8.05250 -6.27979 1.36218 1.38924 1.45788 1.48897 2.39560 3.13843 3.59450 3.81412 3.86770 4.11627 4.25537 4.39156 4.47829 4.50498 4.61574 4.68591 4.72877 4.76994 4.79417 4.83521 4.93847 4.96271 4.97616 5.00463 5.04020 5.11414 5.16281 5.19857 5.25950 5.31272 5.40297 5.43269 5.47018 5.52715 5.59779 5.64862 5.78627 5.90625 6.11976 6.21369 6.24148 6.40621 6.83854 7.03497 7.43759 8.90979 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.005189 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.747247 B = 5394.836803 C = 6283.208810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.558 4.558 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.675 5.675 14 C 0.078 3.922 15 C -0.071 4.071 16 H 0.063 0.937 17 C -0.061 4.061 18 C -0.131 4.131 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.058 4.058 22 H 0.076 0.924 23 C -0.137 4.137 24 C -0.107 4.107 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.327 0.673 32 H 0.007 0.993 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 10.371 11.740 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.303 5.303 14 C -0.052 4.052 15 C -0.090 4.090 16 H 0.082 0.918 17 C -0.098 4.098 18 C -0.131 4.131 19 C -0.175 4.175 20 C -0.181 4.181 21 C -0.076 4.076 22 H 0.094 0.906 23 C -0.194 4.194 24 C -0.145 4.145 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.904 10.177 11.458 17.724 hybrid contribution 2.117 -0.049 -0.701 2.231 sum -6.786 10.128 10.758 16.259 Atomic orbital electron populations 1.21535 0.96375 0.99416 1.00627 1.21344 0.94396 0.98322 0.99927 1.18923 0.91435 0.91527 0.86854 0.98637 1.22204 0.94133 1.37832 1.05585 0.93354 1.25667 1.02135 0.94789 0.95451 1.70021 1.36367 1.38822 1.09841 0.85632 0.81081 0.77789 0.77850 1.19549 1.20466 1.20768 1.60813 1.54392 1.07263 1.07850 1.21793 0.97409 0.88859 0.97116 1.21090 0.96649 0.94891 0.96396 0.91846 1.20203 0.94124 0.99021 0.96434 1.21154 0.97926 0.96173 0.97860 1.20931 0.94886 1.01407 1.00244 1.22017 0.98543 0.96442 1.01145 1.19976 0.96172 0.95593 0.95832 0.90625 1.21751 1.01696 0.93846 1.02155 1.21672 1.01262 0.94011 0.97540 0.93802 0.92282 0.95273 0.92289 0.95298 0.92913 0.85665 0.97472 0.93470 0.92283 0.91262 0.91288 0.91063 0.92137 0.86842 0.91545 0.92289 0.92893 0.92085 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.72 71.98 0.70 -4.28 16 2 C -0.10 -4.92 5.45 30.59 0.17 -4.75 16 3 C 0.22 11.18 1.98 44.17 0.09 11.27 16 4 H 0.00 -0.25 7.71 -2.39 -0.02 -0.27 16 5 C -0.56 -30.61 8.46 25.60 0.22 -30.40 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.61 16 7 C 0.02 1.08 5.30 84.65 0.45 1.53 16 8 N -0.91 -52.60 11.30 21.45 0.24 -52.36 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 N -0.67 -28.15 5.42 -495.46 -2.69 -30.84 16 14 C 0.08 2.95 4.90 86.30 0.42 3.38 16 15 C -0.07 -2.12 2.43 -10.66 -0.03 -2.15 16 16 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 17 C -0.06 -1.71 4.86 29.66 0.14 -1.57 16 18 C -0.13 -3.09 5.84 -15.10 -0.09 -3.18 16 19 C -0.12 -2.27 9.87 71.24 0.70 -1.57 16 20 C -0.16 -3.52 8.61 27.03 0.23 -3.29 16 21 C -0.06 -1.23 2.97 -11.73 -0.03 -1.26 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 C -0.14 -2.39 9.14 71.99 0.66 -1.73 16 24 C -0.11 -2.74 4.60 30.73 0.14 -2.60 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 2.25 7.90 -2.39 -0.02 2.23 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 3.23 5.98 -2.39 -0.01 3.22 16 29 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 31 H 0.33 13.57 8.46 -89.69 -0.76 12.81 16 32 H 0.01 0.29 8.11 -2.38 -0.02 0.27 16 33 H 0.05 1.87 7.89 -2.39 -0.02 1.85 16 34 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 38 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.11 2.06 7.80 -2.91 -0.02 2.03 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -57.78 343.20 3.52 -54.25 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.17 Total: 23.75 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 3.77 Total: -40.60 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.44 Total: -83.20 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -57.78 3.52 -54.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300011901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.203 kcal (2) G-P(sol) polarization free energy of solvation -57.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds