Wall clock time and date at job start Mon Mar 30 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 H 1.09001 * 109.47123 * 175.53546 * 3 2 1 5 5 C 1.50701 * 109.47372 * 55.53577 * 3 2 1 6 6 H 1.07995 * 119.99835 * 240.00157 * 5 3 2 7 7 C 1.37874 * 119.99609 * 60.00139 * 5 3 2 8 8 N 1.31514 * 119.99680 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00593 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47203 * 270.00408 * 9 7 5 11 11 H 1.48499 * 109.47576 * 150.00104 * 9 7 5 12 12 H 1.48506 * 109.46844 * 30.00174 * 9 7 5 13 13 N 1.46904 * 109.47126 * 295.53417 * 3 2 1 14 14 C 1.46901 * 110.99819 * 273.90388 * 13 3 2 15 15 C 1.53001 * 109.46658 * 176.27689 * 14 13 3 16 16 H 1.08999 * 109.64294 * 304.57827 * 15 14 13 17 17 C 1.53026 * 109.64486 * 65.00188 * 15 14 13 18 18 C 1.50062 * 110.15137 * 169.11849 * 17 15 14 19 19 C 1.50702 * 117.96584 * 162.84402 * 18 17 15 20 20 C 1.29447 * 124.07278 * 342.87112 * 18 17 15 21 21 C 1.50065 * 124.07594 * 0.48694 * 20 18 17 22 22 H 1.09001 * 109.35530 * 222.77703 * 21 20 18 23 23 C 1.52999 * 109.35689 * 103.05656 * 21 20 18 24 24 C 1.53037 * 110.14281 * 342.83324 * 21 20 18 25 25 H 1.08998 * 109.46816 * 65.25825 * 1 2 3 26 26 H 1.08993 * 109.46816 * 185.26159 * 1 2 3 27 27 H 1.09004 * 109.46779 * 305.26518 * 1 2 3 28 28 H 1.09003 * 109.47369 * 239.99934 * 2 1 3 29 29 H 1.09004 * 109.47171 * 120.00142 * 2 1 3 30 30 H 0.96998 * 120.00403 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99917 * 37.85802 * 13 3 2 32 32 H 1.09002 * 109.47238 * 296.27411 * 14 13 3 33 33 H 1.08994 * 109.47412 * 56.28270 * 14 13 3 34 34 H 1.08999 * 109.35645 * 289.32760 * 17 15 14 35 35 H 1.08999 * 109.35553 * 49.04263 * 17 15 14 36 36 H 1.08998 * 109.46716 * 90.00197 * 19 18 17 37 37 H 1.08996 * 109.47128 * 210.00542 * 19 18 17 38 38 H 1.08996 * 109.46976 * 330.00360 * 19 18 17 39 39 H 1.08005 * 117.96111 * 180.47134 * 20 18 17 40 40 H 1.09001 * 109.47319 * 60.00324 * 23 21 20 41 41 H 1.09000 * 109.47060 * 179.97438 * 23 21 20 42 42 H 1.08995 * 109.47518 * 299.99736 * 23 21 20 43 43 H 1.08998 * 109.65822 * 289.77913 * 24 21 20 44 44 H 1.09001 * 109.63778 * 169.13649 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4495 2.1841 1.1714 6 1 0.8384 3.0587 1.0042 7 6 1.6894 1.7460 2.4565 8 7 1.1736 2.3930 3.4788 9 14 2.7458 0.2328 2.7457 10 1 1.8845 -0.9768 2.7596 11 1 3.4440 0.3584 4.0502 12 1 3.7487 0.1140 1.6569 13 7 1.6404 2.1032 -1.2498 14 6 2.6192 1.8498 -2.3155 15 6 2.1239 2.4739 -3.6216 16 1 1.1296 2.0935 -3.8556 17 6 2.0712 3.9964 -3.4768 18 6 1.8456 4.6356 -4.8156 19 6 1.3748 6.0669 -4.8450 20 6 2.0298 4.0339 -5.9468 21 6 2.4846 2.6098 -6.0773 22 1 3.2342 2.5407 -6.8656 23 6 1.2882 1.7262 -6.4363 24 6 3.0938 2.1281 -4.7586 25 1 -0.3633 0.4301 -0.9333 26 1 -0.3633 -1.0233 0.0942 27 1 -0.3633 0.5934 0.8391 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.3420 2.0847 4.3829 31 1 0.7157 1.8142 -1.5319 32 1 3.5771 2.2922 -2.0417 33 1 2.7404 0.7750 -2.4495 34 1 1.2566 4.2674 -2.8051 35 1 3.0144 4.3528 -3.0628 36 1 2.2375 6.7328 -4.8635 37 1 0.7692 6.2319 -5.7362 38 1 0.7771 6.2711 -3.9567 39 1 1.8444 4.5914 -6.8530 40 1 0.8606 2.0602 -7.3817 41 1 1.6167 0.6913 -6.5321 42 1 0.5352 1.7976 -5.6515 43 1 4.0478 2.6280 -4.5912 44 1 3.2437 1.0491 -4.7968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300011903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:20 Heat of formation + Delta-G solvation = -27.142440 kcal Electronic energy + Delta-G solvation = -19274.448386 eV Core-core repulsion = 16611.083008 eV Total energy + Delta-G solvation = -2663.365378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36572 -38.39379 -35.03786 -34.26513 -33.65673 -31.42388 -28.78782 -27.65237 -27.44166 -25.66765 -24.95666 -22.44625 -21.43498 -21.25689 -18.44278 -18.13644 -17.05775 -16.68576 -16.14593 -15.69866 -15.39115 -14.97131 -14.90580 -14.58110 -14.50033 -14.21973 -13.92889 -13.69071 -13.40751 -13.31892 -13.11530 -12.82440 -12.60051 -12.45974 -12.39032 -12.28382 -12.13253 -12.08167 -11.68377 -11.33758 -11.25737 -11.19616 -11.01695 -10.85017 -10.64811 -9.55426 -8.92907 -8.22847 -6.21825 1.29403 1.34479 1.43429 1.43499 2.34205 3.12055 3.49445 3.77474 3.85449 4.01546 4.24300 4.28708 4.30736 4.36461 4.40409 4.50849 4.57425 4.65009 4.69459 4.74347 4.79186 4.84630 4.93460 4.96874 4.98480 5.00272 5.08761 5.09765 5.15179 5.15975 5.24150 5.29602 5.32671 5.40923 5.46452 5.58624 5.60513 5.74907 5.88482 6.09858 6.23064 6.75276 6.81575 6.85052 7.41553 8.94651 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.005197 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.982055 B = 5386.735200 C = 5818.434520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.020 0.980 5 C -0.483 4.483 6 H 0.036 0.964 7 C 0.013 3.987 8 N -0.952 5.952 9 Si 0.941 3.059 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.254 1.254 13 N -0.680 5.680 14 C 0.065 3.935 15 C -0.074 4.074 16 H 0.071 0.929 17 C -0.067 4.067 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.161 4.161 21 C -0.056 4.056 22 H 0.087 0.913 23 C -0.140 4.140 24 C -0.107 4.107 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.335 0.665 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -1.880 -21.049 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.080 3.920 4 H 0.038 0.962 5 C -0.522 4.522 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.229 1.229 12 H -0.179 1.179 13 N -0.311 5.311 14 C -0.065 4.065 15 C -0.093 4.093 16 H 0.089 0.911 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.178 4.178 20 C -0.179 4.179 21 C -0.075 4.075 22 H 0.105 0.895 23 C -0.197 4.197 24 C -0.145 4.145 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.680 -1.250 -20.708 20.918 hybrid contribution 0.154 -1.197 0.852 1.477 sum 2.833 -2.447 -19.856 20.206 Atomic orbital electron populations 1.21564 0.94962 1.00589 1.01859 1.22404 0.98011 0.99425 0.99629 1.19448 0.94635 0.89193 0.88742 0.96169 1.21112 1.29762 1.11335 0.89946 0.94594 1.25655 0.97040 0.99727 0.95869 1.70037 1.47560 1.42590 0.99145 0.85970 0.79834 0.80527 0.76724 1.19319 1.22937 1.17865 1.60489 1.05098 1.62583 1.02944 1.22057 0.95842 0.97485 0.91078 1.21155 0.99626 0.95112 0.93399 0.91105 1.20254 1.01432 0.94488 0.94209 1.21090 1.00291 0.96789 0.94930 1.20958 1.01114 0.93253 1.02443 1.21994 1.02314 0.96517 0.97079 1.19991 0.97861 0.92295 0.97304 0.89483 1.21797 0.97366 0.99204 1.01317 1.21677 0.97919 1.01180 0.93715 0.92147 0.92657 0.93795 0.91918 0.94583 0.92830 0.84572 0.92765 0.95411 0.92152 0.92361 0.91330 0.90972 0.92660 0.87026 0.91938 0.91848 0.93525 0.92125 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.16 -6.32 5.23 30.59 0.16 -6.16 16 3 C 0.19 8.73 1.92 44.17 0.08 8.81 16 4 H 0.02 0.98 6.89 -2.39 -0.02 0.97 16 5 C -0.48 -27.39 7.86 25.60 0.20 -27.19 16 6 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 7 C 0.01 0.78 5.45 84.65 0.46 1.24 16 8 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.94 45.35 24.33 68.60 1.67 47.02 16 10 H -0.27 -12.23 6.91 99.48 0.69 -11.54 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 13 N -0.68 -26.79 5.92 -495.44 -2.94 -29.73 16 14 C 0.06 2.07 4.87 86.30 0.42 2.49 16 15 C -0.07 -1.95 2.30 -10.65 -0.02 -1.97 16 16 H 0.07 1.86 6.45 -2.39 -0.02 1.85 16 17 C -0.07 -1.88 4.88 29.66 0.14 -1.73 16 18 C -0.13 -3.07 5.84 -15.10 -0.09 -3.16 16 19 C -0.12 -2.49 9.87 71.24 0.70 -1.79 16 20 C -0.16 -3.26 8.61 27.03 0.23 -3.03 16 21 C -0.06 -1.03 3.12 -11.73 -0.04 -1.07 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.14 -2.35 8.97 71.98 0.65 -1.71 16 24 C -0.11 -2.27 4.74 30.74 0.15 -2.13 16 25 H 0.06 2.04 6.61 -2.39 -0.02 2.02 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.04 2.00 6.89 -2.38 -0.02 1.99 16 28 H 0.06 2.18 7.40 -2.39 -0.02 2.16 16 29 H 0.04 1.55 3.39 -2.38 -0.01 1.54 16 30 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.34 12.48 6.55 -89.69 -0.59 11.89 16 32 H 0.05 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.03 0.84 7.38 -2.39 -0.02 0.82 16 34 H 0.06 1.95 8.00 -2.39 -0.02 1.93 16 35 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.25 7.90 -2.39 -0.02 1.23 16 38 H 0.05 1.23 8.03 -2.39 -0.02 1.21 16 39 H 0.11 1.93 7.81 -2.91 -0.02 1.90 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 0.91 6.59 -2.39 -0.02 0.89 16 43 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 44 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -63.42 327.16 3.04 -60.38 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.28 Total: 23.76 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.73 Total: -41.78 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.64 Total: -89.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Total: -63.42 3.04 -60.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300011903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.235 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds