Wall clock time and date at job start Mon Mar 30 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 H 1.08993 * 109.50518 * 54.92073 * 3 2 1 5 5 C 1.53123 * 109.53623 * 294.81927 * 3 2 1 6 6 C 1.53123 * 109.16184 * 182.38747 * 5 3 2 7 7 C 1.53032 * 109.27745 * 57.65376 * 6 5 3 8 8 H 1.08999 * 109.46182 * 180.80590 * 7 6 5 9 9 C 1.53002 * 109.46313 * 60.83654 * 7 6 5 10 10 N 1.46847 * 109.52611 * 300.82170 * 7 6 5 11 11 C 1.46901 * 111.00319 * 185.84336 * 10 7 6 12 12 C 1.52992 * 109.47292 * 52.75198 * 11 10 7 13 13 C 1.50701 * 115.55139 * 55.69515 * 12 11 10 14 14 H 1.07994 * 119.99611 * 0.27471 * 13 12 11 15 15 C 1.37878 * 120.00263 * 180.27972 * 13 12 11 16 16 N 1.31512 * 119.99838 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46935 * 60.00062 * 17 15 13 19 19 H 1.48504 * 109.47164 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47392 * 300.00022 * 17 15 13 21 21 C 1.53005 * 117.49863 * 270.02503 * 12 11 10 22 22 C 1.53002 * 117.49933 * 201.36732 * 12 11 10 23 23 C 1.46847 * 111.19997 * 61.74245 * 10 7 6 24 24 H 1.09001 * 109.47286 * 300.00450 * 1 2 3 25 25 H 1.09007 * 109.46757 * 60.00223 * 1 2 3 26 26 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47286 * 239.99550 * 2 1 3 28 28 H 1.09007 * 109.46757 * 119.99777 * 2 1 3 29 29 H 1.08997 * 109.52270 * 302.29202 * 5 3 2 30 30 H 1.08998 * 109.51748 * 62.41803 * 5 3 2 31 31 H 1.09000 * 109.50211 * 177.59366 * 6 5 3 32 32 H 1.08997 * 109.49849 * 297.67786 * 6 5 3 33 33 H 1.08994 * 109.47418 * 305.60288 * 9 7 6 34 34 H 1.09001 * 109.46999 * 65.60518 * 9 7 6 35 35 H 1.09004 * 109.46826 * 185.60202 * 9 7 6 36 36 H 1.08996 * 109.47329 * 172.75557 * 11 10 7 37 37 H 1.09001 * 109.46815 * 292.75283 * 11 10 7 38 38 H 0.96998 * 120.00342 * 179.97438 * 16 15 13 39 39 H 1.09003 * 117.50128 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49956 * 145.02471 * 21 12 11 41 41 H 1.09002 * 117.49454 * 214.97773 * 22 12 11 42 42 H 1.08997 * 117.49903 * 359.97438 * 22 12 11 43 43 H 1.09002 * 109.46057 * 58.27535 * 23 10 7 44 44 H 1.08998 * 109.46494 * 178.24179 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 0.8408 5 6 1.6395 2.1271 -1.3098 6 6 2.2049 3.5501 -1.3264 7 6 3.7252 3.4916 -1.1621 8 1 4.1294 4.5039 -1.1592 9 6 4.3336 2.7035 -2.3239 10 7 4.0568 2.8288 0.1055 11 6 5.5023 2.8777 0.3629 12 6 5.9901 4.3240 0.2593 13 6 5.2841 5.3136 1.1499 14 1 4.4940 4.9809 1.8068 15 6 5.6466 6.6436 1.1261 16 7 6.6090 7.0486 0.3265 17 14 4.7709 7.8703 2.2296 18 1 4.9506 7.4748 3.6497 19 1 5.3425 9.2242 2.0162 20 1 3.3230 7.8872 1.8999 21 6 6.4565 4.8156 -1.1125 22 6 7.4800 4.5498 -0.0058 23 6 3.5652 1.4452 0.1258 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0424 1.5653 -2.1525 30 1 0.5527 2.1650 -1.3834 31 1 1.9594 4.0281 -2.2747 32 1 1.7715 4.1233 -0.5068 33 1 3.8571 1.7253 -2.3883 34 1 4.1741 3.2474 -3.2549 35 1 5.4031 2.5763 -2.1560 36 1 5.7063 2.4962 1.3634 37 1 6.0232 2.2649 -0.3728 38 1 6.8638 7.9844 0.3095 39 1 6.4162 4.1085 -1.9411 40 1 6.2531 5.8549 -1.3706 41 1 7.9493 5.4143 0.4638 42 1 8.1127 3.6679 -0.1058 43 1 3.9994 0.8933 -0.7079 44 1 3.8531 0.9711 1.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304347844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:06 Heat of formation + Delta-G solvation = 18.559703 kcal Electronic energy + Delta-G solvation = -20168.247563 eV Core-core repulsion = 17506.863979 eV Total energy + Delta-G solvation = -2661.383584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.50161 -36.63915 -34.41988 -32.17922 -31.28436 -29.64295 -27.50555 -25.71915 -24.95917 -23.33356 -22.38389 -20.68636 -20.44274 -18.83064 -17.96120 -16.07011 -15.27282 -14.90377 -14.66904 -14.49836 -14.07712 -13.97414 -13.37702 -13.02031 -12.65426 -12.43315 -12.34080 -11.92900 -11.79243 -11.52394 -11.35299 -11.03249 -10.91898 -10.87482 -10.73380 -10.50988 -10.44903 -10.11201 -10.08499 -9.89516 -9.79921 -9.53862 -9.24627 -8.72037 -8.18875 -7.92940 -7.36292 -5.85078 -3.87666 3.37151 3.41423 3.45304 4.48937 4.54721 4.95304 5.08114 5.13038 5.22172 5.38327 5.46906 5.50163 5.73414 5.78531 5.83636 5.93566 5.95927 5.99962 6.01749 6.03589 6.08290 6.11507 6.20771 6.24443 6.35099 6.38551 6.44408 6.50794 6.56367 6.64428 6.70576 6.79444 6.89744 6.98553 7.20432 7.33122 7.41122 7.78286 7.97314 8.05198 8.16987 8.29914 8.65895 9.10886 9.66435 11.11136 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.006849 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.579856 B = 4087.199804 C = 4543.354059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.076 0.924 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.082 3.918 8 H 0.113 0.887 9 C -0.185 4.185 10 N -0.512 5.512 11 C 0.102 3.898 12 C 0.024 3.976 13 C -0.451 4.451 14 H 0.066 0.934 15 C 0.053 3.947 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.193 4.193 22 C -0.191 4.191 23 C 0.056 3.944 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.010 0.990 38 H 0.256 0.744 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.025 0.975 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 -10.621 -3.289 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.095 0.905 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.026 4.026 8 H 0.130 0.870 9 C -0.243 4.243 10 N -0.234 5.234 11 C -0.025 4.025 12 C 0.024 3.976 13 C -0.489 4.489 14 H 0.084 0.916 15 C -0.147 4.147 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.230 4.230 22 C -0.230 4.230 23 C -0.072 4.072 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.397 -10.182 -2.938 13.521 hybrid contribution 0.155 0.227 -0.195 0.337 sum -8.242 -9.955 -3.133 13.298 Atomic orbital electron populations 1.21792 0.96123 1.00960 1.01935 1.21534 0.95661 0.96896 1.01502 1.21177 0.95469 0.94883 0.98603 0.90525 1.21687 0.99613 0.96760 0.97085 1.21590 0.96011 0.96067 1.01234 1.21722 0.93964 1.00576 0.86321 0.86955 1.22561 1.01517 1.00391 0.99876 1.61972 1.15114 1.13596 1.32748 1.21578 0.85762 0.96934 0.98261 1.18942 0.92696 0.90524 0.95473 1.20550 1.17014 0.90796 1.20490 0.91571 1.25020 0.95328 0.98474 0.95878 1.70013 1.29106 1.15565 1.37806 0.86628 0.79895 0.80132 0.81115 1.20464 1.21641 1.20360 1.22967 1.06853 1.01998 0.91216 1.22845 0.93740 1.00723 1.05695 1.22092 0.94408 0.90964 0.99768 0.92772 0.92610 0.93326 0.92507 0.92229 0.92551 0.92585 0.92482 0.91272 0.93340 0.93079 0.92328 0.92161 0.97200 0.93351 0.93924 0.87373 0.87302 0.94404 0.95644 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.12 -1.32 5.41 -26.73 -0.14 -1.46 16 3 C -0.08 -1.13 2.35 -90.54 -0.21 -1.34 16 4 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.11 -1.54 4.68 -26.60 -0.12 -1.66 16 6 C -0.11 -1.78 5.61 -26.65 -0.15 -1.93 16 7 C 0.08 1.53 2.37 -67.72 -0.16 1.37 16 8 H 0.11 2.51 5.31 -51.93 -0.28 2.24 16 9 C -0.18 -3.08 7.56 37.16 0.28 -2.80 16 10 N -0.51 -9.79 4.42 -226.69 -1.00 -10.79 16 11 C 0.10 2.14 4.56 -3.83 -0.02 2.12 16 12 C 0.02 0.59 1.35 -155.66 -0.21 0.38 16 13 C -0.45 -12.12 8.56 -34.44 -0.29 -12.42 16 14 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.05 1.44 5.27 -17.82 -0.09 1.34 16 16 N -0.89 -24.57 8.59 55.43 0.48 -24.10 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.19 -4.69 7.32 -26.69 -0.20 -4.88 16 22 C -0.19 -4.77 9.39 -26.69 -0.25 -5.02 16 23 C 0.06 0.89 4.45 -3.83 -0.02 0.87 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.54 6.63 -51.93 -0.34 0.20 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 30 H 0.06 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.74 4.84 -51.93 -0.25 0.48 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.06 4.72 -51.93 -0.25 0.81 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.01 0.20 6.66 -51.93 -0.35 -0.14 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.04 0.95 5.80 -51.93 -0.30 0.65 16 40 H 0.11 2.93 6.26 -51.93 -0.33 2.61 16 41 H 0.11 3.00 6.31 -51.93 -0.33 2.67 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.40 6.32 -51.93 -0.33 0.07 16 44 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -26.76 314.05 -9.66 -36.42 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.62 Total: 3.96 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -1.23 Total: -26.57 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.53 Total: -34.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.76 -9.66 -36.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304347844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.984 kcal (2) G-P(sol) polarization free energy of solvation -26.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds