Wall clock time and date at job start Mon Mar 30 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 H 1.08993 * 109.50518 * 54.92073 * 3 2 1 5 5 C 1.53123 * 109.53623 * 294.81927 * 3 2 1 6 6 C 1.53123 * 109.16184 * 182.38747 * 5 3 2 7 7 C 1.53032 * 109.27745 * 57.65376 * 6 5 3 8 8 H 1.08999 * 109.46182 * 180.80590 * 7 6 5 9 9 C 1.53002 * 109.46313 * 60.83654 * 7 6 5 10 10 N 1.46847 * 109.52611 * 300.82170 * 7 6 5 11 11 C 1.46901 * 111.00319 * 185.84336 * 10 7 6 12 12 C 1.52992 * 109.47292 * 52.75198 * 11 10 7 13 13 C 1.50701 * 115.55139 * 55.69515 * 12 11 10 14 14 H 1.07994 * 119.99611 * 0.27471 * 13 12 11 15 15 C 1.37878 * 120.00263 * 180.27972 * 13 12 11 16 16 N 1.31512 * 119.99838 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46935 * 60.00062 * 17 15 13 19 19 H 1.48504 * 109.47164 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47392 * 300.00022 * 17 15 13 21 21 C 1.53005 * 117.49863 * 270.02503 * 12 11 10 22 22 C 1.53002 * 117.49933 * 201.36732 * 12 11 10 23 23 C 1.46847 * 111.19997 * 61.74245 * 10 7 6 24 24 H 1.09001 * 109.47286 * 300.00450 * 1 2 3 25 25 H 1.09007 * 109.46757 * 60.00223 * 1 2 3 26 26 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47286 * 239.99550 * 2 1 3 28 28 H 1.09007 * 109.46757 * 119.99777 * 2 1 3 29 29 H 1.08997 * 109.52270 * 302.29202 * 5 3 2 30 30 H 1.08998 * 109.51748 * 62.41803 * 5 3 2 31 31 H 1.09000 * 109.50211 * 177.59366 * 6 5 3 32 32 H 1.08997 * 109.49849 * 297.67786 * 6 5 3 33 33 H 1.08994 * 109.47418 * 305.60288 * 9 7 6 34 34 H 1.09001 * 109.46999 * 65.60518 * 9 7 6 35 35 H 1.09004 * 109.46826 * 185.60202 * 9 7 6 36 36 H 1.08996 * 109.47329 * 172.75557 * 11 10 7 37 37 H 1.09001 * 109.46815 * 292.75283 * 11 10 7 38 38 H 0.96998 * 120.00342 * 179.97438 * 16 15 13 39 39 H 1.09003 * 117.50128 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49956 * 145.02471 * 21 12 11 41 41 H 1.09002 * 117.49454 * 214.97773 * 22 12 11 42 42 H 1.08997 * 117.49903 * 359.97438 * 22 12 11 43 43 H 1.09002 * 109.46057 * 58.27535 * 23 10 7 44 44 H 1.08998 * 109.46494 * 178.24179 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 0.8408 5 6 1.6395 2.1271 -1.3098 6 6 2.2049 3.5501 -1.3264 7 6 3.7252 3.4916 -1.1621 8 1 4.1294 4.5039 -1.1592 9 6 4.3336 2.7035 -2.3239 10 7 4.0568 2.8288 0.1055 11 6 5.5023 2.8777 0.3629 12 6 5.9901 4.3240 0.2593 13 6 5.2841 5.3136 1.1499 14 1 4.4940 4.9809 1.8068 15 6 5.6466 6.6436 1.1261 16 7 6.6090 7.0486 0.3265 17 14 4.7709 7.8703 2.2296 18 1 4.9506 7.4748 3.6497 19 1 5.3425 9.2242 2.0162 20 1 3.3230 7.8872 1.8999 21 6 6.4565 4.8156 -1.1125 22 6 7.4800 4.5498 -0.0058 23 6 3.5652 1.4452 0.1258 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0424 1.5653 -2.1525 30 1 0.5527 2.1650 -1.3834 31 1 1.9594 4.0281 -2.2747 32 1 1.7715 4.1233 -0.5068 33 1 3.8571 1.7253 -2.3883 34 1 4.1741 3.2474 -3.2549 35 1 5.4031 2.5763 -2.1560 36 1 5.7063 2.4962 1.3634 37 1 6.0232 2.2649 -0.3728 38 1 6.8638 7.9844 0.3095 39 1 6.4162 4.1085 -1.9411 40 1 6.2531 5.8549 -1.3706 41 1 7.9493 5.4143 0.4638 42 1 8.1127 3.6679 -0.1058 43 1 3.9994 0.8933 -0.7079 44 1 3.8531 0.9711 1.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304347844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:05 Heat of formation + Delta-G solvation = 5.243290 kcal Electronic energy + Delta-G solvation = -20168.825006 eV Core-core repulsion = 17506.863979 eV Total energy + Delta-G solvation = -2661.961027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89556 -38.34492 -35.70939 -33.74297 -33.12339 -30.73700 -28.95247 -27.53311 -26.59975 -24.43472 -23.73313 -22.58067 -21.74002 -20.51140 -19.39690 -17.93378 -16.96847 -16.61912 -16.14156 -15.61841 -15.36491 -15.30508 -15.04483 -14.34012 -14.05092 -13.85423 -13.69345 -13.18332 -13.01963 -12.94629 -12.88224 -12.84717 -12.55320 -12.35747 -12.18601 -11.98722 -11.93360 -11.73103 -11.67295 -11.35646 -11.13979 -10.95118 -10.88204 -10.69187 -10.13354 -9.92387 -8.82812 -7.93595 -6.01779 1.44019 1.44405 1.52085 2.47681 3.02516 3.27081 3.87287 3.96881 4.03437 4.07179 4.26407 4.37201 4.39172 4.50031 4.55201 4.60072 4.68585 4.73559 4.75838 4.78472 4.84102 4.86348 4.92044 5.01650 5.08568 5.09717 5.13808 5.20858 5.23617 5.27199 5.33260 5.36487 5.46842 5.49183 5.50878 5.65894 5.71268 5.75018 6.01010 6.23767 6.44159 6.62291 6.64540 7.00663 7.54245 9.00143 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.006849 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.579856 B = 4087.199804 C = 4543.354059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.078 4.078 4 H 0.061 0.939 5 C -0.106 4.106 6 C -0.109 4.109 7 C 0.083 3.917 8 H 0.068 0.932 9 C -0.175 4.175 10 N -0.528 5.528 11 C 0.111 3.889 12 C 0.021 3.979 13 C -0.464 4.464 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.904 5.904 17 Si 0.950 3.050 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.178 4.178 22 C -0.198 4.198 23 C 0.056 3.944 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 -12.398 -3.804 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.097 4.097 4 H 0.079 0.921 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.026 4.026 8 H 0.086 0.914 9 C -0.234 4.234 10 N -0.251 5.251 11 C -0.016 4.016 12 C 0.020 3.980 13 C -0.502 4.502 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.544 5.544 17 Si 0.777 3.223 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.216 4.216 22 C -0.237 4.237 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.910 -11.968 -3.451 15.917 hybrid contribution 0.631 0.795 -0.029 1.015 sum -9.278 -11.173 -3.480 14.934 Atomic orbital electron populations 1.21778 0.95010 1.01934 1.01917 1.21479 0.96552 0.94831 1.02108 1.21147 0.93742 0.96645 0.98184 0.92092 1.21645 1.00694 0.94763 0.97228 1.21559 0.94145 0.97936 1.01073 1.21585 0.95598 0.98493 0.86887 0.91397 1.22442 1.00401 1.01203 0.99310 1.61914 1.13706 1.15971 1.33519 1.21379 0.87358 0.94556 0.98348 1.19037 0.91973 0.92142 0.94856 1.20728 1.16961 0.91709 1.20815 0.92698 1.25653 0.96040 1.00001 0.97113 1.70163 1.29973 1.15523 1.38733 0.85740 0.78856 0.78144 0.79568 1.20145 1.21429 1.20149 1.22730 1.06433 1.00693 0.91774 1.22763 0.94302 1.00483 1.06120 1.22184 0.95879 0.88896 1.00181 0.93161 0.92286 0.91902 0.91637 0.91924 0.91476 0.90697 0.91316 0.93203 0.91306 0.92228 0.93883 0.92536 0.96326 0.93680 0.91919 0.90392 0.90178 0.92302 0.94812 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.77 16 2 C -0.11 -2.14 5.41 30.59 0.17 -1.98 16 3 C -0.08 -1.96 2.35 -10.74 -0.03 -1.99 16 4 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.11 -2.56 4.68 30.68 0.14 -2.41 16 6 C -0.11 -3.35 5.61 30.65 0.17 -3.18 16 7 C 0.08 3.01 2.37 44.94 0.11 3.12 16 8 H 0.07 3.09 5.31 -2.39 -0.01 3.08 16 9 C -0.18 -5.50 7.56 71.98 0.54 -4.96 16 10 N -0.53 -19.87 4.42 -871.12 -3.85 -23.72 16 11 C 0.11 4.64 4.56 86.30 0.39 5.03 16 12 C 0.02 1.02 1.35 -52.93 -0.07 0.94 16 13 C -0.46 -25.51 8.56 25.60 0.22 -25.29 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.54 5.27 84.66 0.45 0.99 16 16 N -0.90 -51.51 8.59 21.45 0.18 -51.33 16 17 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 C -0.18 -8.81 7.32 30.62 0.22 -8.59 16 22 C -0.20 -10.00 9.39 30.62 0.29 -9.71 16 23 C 0.06 1.67 4.45 86.33 0.38 2.06 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.94 6.63 -2.38 -0.02 0.92 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.51 6.43 -2.39 -0.02 1.49 16 30 H 0.07 1.56 6.70 -2.39 -0.02 1.55 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.87 4.84 -2.39 -0.01 1.86 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.48 4.72 -2.39 -0.01 1.47 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 0.74 6.66 -2.39 -0.02 0.73 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.06 2.80 5.80 -2.39 -0.01 2.78 16 40 H 0.08 4.36 6.26 -2.39 -0.01 4.34 16 41 H 0.08 4.53 6.31 -2.39 -0.02 4.51 16 42 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.03 0.96 6.32 -2.39 -0.02 0.94 16 44 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -58.04 314.05 3.01 -55.03 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.96 Total: 21.15 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 3.69 Total: -47.73 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -3.66 Total: -75.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -58.04 3.01 -55.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304347844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.274 kcal (2) G-P(sol) polarization free energy of solvation -58.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds