Wall clock time and date at job start Mon Mar 30 2020 07:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47389 * 2 1 4 4 H 1.09000 * 109.47232 * 305.62711 * 3 2 1 5 5 C 1.50701 * 109.47502 * 185.62421 * 3 2 1 6 6 H 1.07999 * 119.99824 * 239.99969 * 5 3 2 7 7 C 1.37873 * 119.99543 * 60.00294 * 5 3 2 8 8 N 1.31509 * 120.00766 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99517 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47103 * 90.00254 * 9 7 5 11 11 H 1.48500 * 109.47079 * 209.99907 * 9 7 5 12 12 H 1.48497 * 109.47570 * 330.00135 * 9 7 5 13 13 N 1.46906 * 109.46913 * 65.62581 * 3 2 1 14 14 C 1.46902 * 110.99819 * 201.80256 * 13 3 2 15 15 C 1.53004 * 109.46716 * 186.01935 * 14 13 3 16 16 C 1.52998 * 109.47069 * 299.99776 * 15 14 13 17 17 C 1.53001 * 109.47376 * 59.99783 * 15 14 13 18 18 C 1.50700 * 109.47143 * 180.02562 * 15 14 13 19 19 C 1.30532 * 124.44434 * 359.69362 * 18 15 14 20 20 C 1.51103 * 111.10364 * 179.88242 * 19 18 15 21 21 C 1.54635 * 104.77933 * 343.93492 * 20 19 18 22 22 C 1.51096 * 124.45052 * 180.02562 * 18 15 14 23 23 H 1.09005 * 109.46962 * 174.33516 * 1 2 3 24 24 H 1.09000 * 109.47193 * 294.33005 * 1 2 3 25 25 H 1.08999 * 109.47245 * 54.33394 * 1 2 3 26 26 H 1.09005 * 109.47006 * 240.00285 * 2 1 3 27 27 H 1.08997 * 109.47224 * 120.00392 * 2 1 3 28 28 H 0.97002 * 120.00651 * 180.02562 * 8 7 5 29 29 H 1.00896 * 110.99562 * 325.75494 * 13 3 2 30 30 H 1.08992 * 109.47355 * 306.01347 * 14 13 3 31 31 H 1.09003 * 109.47029 * 66.02436 * 14 13 3 32 32 H 1.09005 * 109.47256 * 60.00433 * 16 15 14 33 33 H 1.09004 * 109.47323 * 179.97438 * 16 15 14 34 34 H 1.09004 * 109.47286 * 300.00023 * 16 15 14 35 35 H 1.09000 * 109.46588 * 60.00060 * 17 15 14 36 36 H 1.08993 * 109.47009 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.46902 * 300.00402 * 17 15 14 38 38 H 1.07999 * 124.44726 * 0.02562 * 19 18 15 39 39 H 1.08999 * 110.52848 * 225.02214 * 20 19 18 40 40 H 1.08998 * 110.28984 * 102.72404 * 20 19 18 41 41 H 1.08999 * 111.03859 * 266.40431 * 21 20 19 42 42 H 1.09000 * 111.04201 * 142.46954 * 21 20 19 43 43 H 1.08997 * 110.38724 * 315.22246 * 22 18 15 44 44 H 1.09005 * 110.38924 * 77.48446 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 3.5406 1.4448 -0.1392 6 1 4.1538 1.8865 0.6322 7 6 4.1304 0.8829 -1.2516 8 7 3.3838 0.3455 -2.1913 9 14 5.9905 0.8864 -1.4245 10 1 6.5468 -0.3473 -0.8132 11 1 6.3537 0.9329 -2.8637 12 1 6.5496 2.0764 -0.7343 13 7 1.6643 2.0946 1.2616 14 6 1.6577 3.5565 1.1169 15 6 1.4104 4.2029 2.4815 16 6 0.0592 3.7384 3.0285 17 6 2.5214 3.7912 3.4496 18 6 1.4029 5.7025 2.3330 19 6 1.5875 6.3337 1.2054 20 6 1.5164 7.8303 1.4017 21 6 0.8466 8.0155 2.7832 22 6 1.1879 6.6730 3.4709 23 1 -0.3633 -1.0227 -0.1014 24 1 -0.3633 0.4234 0.9364 25 1 -0.3634 0.5992 -0.8349 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7988 -0.0501 -2.9737 29 1 0.7709 1.7596 1.5897 30 1 2.6202 3.8874 0.7272 31 1 0.8661 3.8497 0.4272 32 1 0.0642 2.6536 3.1359 33 1 -0.1167 4.1985 4.0009 34 1 -0.7323 4.0316 2.3388 35 1 3.4840 4.1222 3.0598 36 1 2.3455 4.2521 4.4215 37 1 2.5263 2.7065 3.5569 38 1 1.7653 5.8498 0.2564 39 1 0.9101 8.2898 0.6211 40 1 2.5185 8.2591 1.4051 41 1 -0.2314 8.1407 2.6817 42 1 1.2872 8.8542 3.3224 43 1 0.3582 6.3458 4.0974 44 1 2.0967 6.7688 4.0652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308764737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:49 Heat of formation + Delta-G solvation = -8.860952 kcal Electronic energy + Delta-G solvation = -19414.735540 eV Core-core repulsion = 16752.162907 eV Total energy + Delta-G solvation = -2662.572633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.26006 -36.67939 -34.68695 -31.92031 -30.46845 -28.84462 -27.57904 -26.84769 -26.51313 -24.39077 -22.56408 -20.59361 -20.04333 -19.50053 -16.98005 -16.27874 -15.70460 -15.43144 -14.69787 -14.52677 -13.85524 -13.55740 -13.16110 -12.84501 -12.69942 -12.50169 -12.14997 -12.04081 -11.80456 -11.57163 -11.41286 -11.16713 -11.14613 -11.01909 -11.00175 -10.85856 -10.58897 -10.50999 -10.29435 -10.18045 -9.91356 -9.61680 -9.40012 -8.99413 -8.41689 -8.30413 -7.12324 -5.92764 -3.96459 2.50203 3.34715 3.41026 3.45178 4.47965 4.66674 4.74774 5.03847 5.14566 5.35433 5.37834 5.45009 5.56920 5.62960 5.71596 5.79883 5.83034 5.93005 5.95531 6.01650 6.12861 6.18558 6.19513 6.20525 6.28125 6.31187 6.41446 6.44717 6.51125 6.62684 6.70057 6.87362 6.89393 7.02742 7.14207 7.22211 7.26041 7.56724 7.83082 7.96521 8.37493 8.44385 8.83983 9.11887 9.68376 11.12662 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.006027 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.991147 B = 4644.944128 C = 5338.388779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.219 3.781 4 H -0.002 1.002 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.081 3.919 15 C -0.015 4.015 16 C -0.136 4.136 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.179 4.179 20 C -0.096 4.096 21 C -0.125 4.125 22 C -0.090 4.090 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.315 0.685 30 H 0.075 0.925 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 10.354 9.065 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.049 4.049 15 C -0.016 4.016 16 C -0.193 4.193 17 C -0.179 4.179 18 C -0.115 4.115 19 C -0.197 4.197 20 C -0.133 4.133 21 C -0.162 4.162 22 C -0.127 4.127 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.467 10.243 9.136 14.774 hybrid contribution 0.218 0.080 -0.841 0.873 sum -5.248 10.322 8.295 14.244 Atomic orbital electron populations 1.21876 0.99706 0.99615 0.99490 1.21733 0.91138 1.00372 1.02966 1.19125 0.95386 0.89953 0.84379 0.98451 1.21201 0.91303 1.36251 1.04092 0.92113 1.24949 0.97947 0.95768 0.95899 1.69872 1.34579 1.39677 1.09593 0.86580 0.86021 0.78370 0.76900 1.20797 1.21491 1.20039 1.60673 1.33622 1.03172 1.34044 1.21821 1.00362 0.89768 0.92920 1.19360 0.95754 0.89299 0.97147 1.21809 0.96042 1.01454 0.99986 1.21638 0.97268 1.02562 0.96471 1.21982 0.99816 0.94757 0.94957 1.23174 1.02922 0.94873 0.98713 1.21291 1.00432 0.94701 0.96909 1.22434 1.00443 0.97172 0.96178 1.21247 1.01233 0.93277 0.96971 0.94463 0.94643 0.93977 0.88362 0.94074 0.93168 0.86727 0.90701 0.96968 0.91827 0.93214 0.93369 0.93119 0.94352 0.90778 0.85608 0.91686 0.91201 0.91473 0.91436 0.91540 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.63 37.15 0.36 -2.56 16 2 C -0.12 -2.93 5.38 -26.74 -0.14 -3.07 16 3 C 0.22 5.45 2.02 -68.86 -0.14 5.31 16 4 H 0.00 -0.06 7.91 -51.93 -0.41 -0.47 16 5 C -0.49 -13.51 8.37 -34.44 -0.29 -13.79 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.06 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.29 5.41 -107.95 -0.58 -14.87 16 14 C 0.08 1.55 3.24 -3.82 -0.01 1.54 16 15 C -0.02 -0.23 0.77 -155.66 -0.12 -0.35 16 16 C -0.14 -1.88 8.01 37.16 0.30 -1.59 16 17 C -0.12 -1.91 8.22 37.16 0.31 -1.61 16 18 C -0.11 -1.64 4.77 -100.74 -0.48 -2.12 16 19 C -0.18 -2.59 9.72 -35.70 -0.35 -2.93 16 20 C -0.10 -1.13 6.81 -26.83 -0.18 -1.31 16 21 C -0.12 -1.30 7.19 -25.00 -0.18 -1.48 16 22 C -0.09 -1.06 6.40 -26.82 -0.17 -1.23 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.62 6.65 -51.93 -0.35 0.27 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.31 6.05 4.93 -39.29 -0.19 5.86 16 30 H 0.07 1.61 7.40 -51.93 -0.38 1.23 16 31 H 0.01 0.24 7.79 -51.93 -0.40 -0.17 16 32 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 33 H 0.05 0.61 7.42 -51.93 -0.39 0.22 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.07 1.26 7.60 -51.93 -0.39 0.86 16 38 H 0.13 1.98 6.77 -52.49 -0.36 1.62 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.73 7.39 -51.93 -0.38 0.35 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -27.88 335.44 -9.23 -37.11 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.10 Total: 4.89 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.20 Total: -23.78 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.04 Total: -39.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.88 -9.23 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308764737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.246 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds