Wall clock time and date at job start Mon Mar 30 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47389 * 2 1 4 4 H 1.09000 * 109.47232 * 305.62711 * 3 2 1 5 5 C 1.50701 * 109.47502 * 185.62421 * 3 2 1 6 6 H 1.07999 * 119.99824 * 239.99969 * 5 3 2 7 7 C 1.37873 * 119.99543 * 60.00294 * 5 3 2 8 8 N 1.31509 * 120.00766 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99517 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47103 * 90.00254 * 9 7 5 11 11 H 1.48500 * 109.47079 * 209.99907 * 9 7 5 12 12 H 1.48497 * 109.47570 * 330.00135 * 9 7 5 13 13 N 1.46906 * 109.46913 * 65.62581 * 3 2 1 14 14 C 1.46902 * 110.99819 * 201.80256 * 13 3 2 15 15 C 1.53004 * 109.46716 * 186.01935 * 14 13 3 16 16 C 1.52998 * 109.47069 * 299.99776 * 15 14 13 17 17 C 1.53001 * 109.47376 * 59.99783 * 15 14 13 18 18 C 1.50700 * 109.47143 * 180.02562 * 15 14 13 19 19 C 1.30532 * 124.44434 * 359.69362 * 18 15 14 20 20 C 1.51103 * 111.10364 * 179.88242 * 19 18 15 21 21 C 1.54635 * 104.77933 * 343.93492 * 20 19 18 22 22 C 1.51096 * 124.45052 * 180.02562 * 18 15 14 23 23 H 1.09005 * 109.46962 * 174.33516 * 1 2 3 24 24 H 1.09000 * 109.47193 * 294.33005 * 1 2 3 25 25 H 1.08999 * 109.47245 * 54.33394 * 1 2 3 26 26 H 1.09005 * 109.47006 * 240.00285 * 2 1 3 27 27 H 1.08997 * 109.47224 * 120.00392 * 2 1 3 28 28 H 0.97002 * 120.00651 * 180.02562 * 8 7 5 29 29 H 1.00896 * 110.99562 * 325.75494 * 13 3 2 30 30 H 1.08992 * 109.47355 * 306.01347 * 14 13 3 31 31 H 1.09003 * 109.47029 * 66.02436 * 14 13 3 32 32 H 1.09005 * 109.47256 * 60.00433 * 16 15 14 33 33 H 1.09004 * 109.47323 * 179.97438 * 16 15 14 34 34 H 1.09004 * 109.47286 * 300.00023 * 16 15 14 35 35 H 1.09000 * 109.46588 * 60.00060 * 17 15 14 36 36 H 1.08993 * 109.47009 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.46902 * 300.00402 * 17 15 14 38 38 H 1.07999 * 124.44726 * 0.02562 * 19 18 15 39 39 H 1.08999 * 110.52848 * 225.02214 * 20 19 18 40 40 H 1.08998 * 110.28984 * 102.72404 * 20 19 18 41 41 H 1.08999 * 111.03859 * 266.40431 * 21 20 19 42 42 H 1.09000 * 111.04201 * 142.46954 * 21 20 19 43 43 H 1.08997 * 110.38724 * 315.22246 * 22 18 15 44 44 H 1.09005 * 110.38924 * 77.48446 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 3.5406 1.4448 -0.1392 6 1 4.1538 1.8865 0.6322 7 6 4.1304 0.8829 -1.2516 8 7 3.3838 0.3455 -2.1913 9 14 5.9905 0.8864 -1.4245 10 1 6.5468 -0.3473 -0.8132 11 1 6.3537 0.9329 -2.8637 12 1 6.5496 2.0764 -0.7343 13 7 1.6643 2.0946 1.2616 14 6 1.6577 3.5565 1.1169 15 6 1.4104 4.2029 2.4815 16 6 0.0592 3.7384 3.0285 17 6 2.5214 3.7912 3.4496 18 6 1.4029 5.7025 2.3330 19 6 1.5875 6.3337 1.2054 20 6 1.5164 7.8303 1.4017 21 6 0.8466 8.0155 2.7832 22 6 1.1879 6.6730 3.4709 23 1 -0.3633 -1.0227 -0.1014 24 1 -0.3633 0.4234 0.9364 25 1 -0.3634 0.5992 -0.8349 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7988 -0.0501 -2.9737 29 1 0.7709 1.7596 1.5897 30 1 2.6202 3.8874 0.7272 31 1 0.8661 3.8497 0.4272 32 1 0.0642 2.6536 3.1359 33 1 -0.1167 4.1985 4.0009 34 1 -0.7323 4.0316 2.3388 35 1 3.4840 4.1222 3.0598 36 1 2.3455 4.2521 4.4215 37 1 2.5263 2.7065 3.5569 38 1 1.7653 5.8498 0.2564 39 1 0.9101 8.2898 0.6211 40 1 2.5185 8.2591 1.4051 41 1 -0.2314 8.1407 2.6817 42 1 1.2872 8.8542 3.3224 43 1 0.3582 6.3458 4.0974 44 1 2.0967 6.7688 4.0652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308764737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:48 Heat of formation + Delta-G solvation = -23.059057 kcal Electronic energy + Delta-G solvation = -19415.351216 eV Core-core repulsion = 16752.162907 eV Total energy + Delta-G solvation = -2663.188309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42774 -38.24708 -36.21897 -33.95943 -32.12983 -29.86554 -28.82802 -28.29068 -27.99023 -26.04556 -24.36682 -21.66153 -21.43386 -21.20028 -18.39499 -18.15922 -17.14624 -16.46006 -16.37299 -16.22711 -15.55668 -15.01916 -14.72202 -14.31584 -13.92802 -13.79313 -13.66166 -13.49779 -13.13654 -12.96293 -12.80634 -12.76253 -12.56259 -12.51405 -12.42231 -12.02504 -12.00037 -11.95736 -11.80928 -11.70870 -11.54212 -11.45261 -11.02394 -10.97531 -10.43106 -9.50055 -8.96325 -8.07400 -6.18990 1.37786 1.39189 1.39717 1.50050 2.42582 3.17403 3.49893 3.72208 3.89620 4.10140 4.19943 4.25507 4.26538 4.45990 4.49121 4.56746 4.61285 4.69594 4.78998 4.84606 4.91657 4.93260 4.93812 5.01654 5.06402 5.11057 5.13295 5.15732 5.20444 5.23994 5.32406 5.36639 5.41196 5.44584 5.59250 5.61175 5.75022 5.84633 5.90487 6.09606 6.36761 6.49942 6.94872 7.04005 7.49864 8.95979 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.006027 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.991147 B = 4644.944128 C = 5338.388779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.225 3.775 4 H -0.040 1.040 5 C -0.507 4.507 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.090 3.910 15 C -0.012 4.012 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.199 4.199 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.087 4.087 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.040 0.960 31 H 0.003 0.997 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 11.367 11.080 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.117 3.883 4 H -0.023 1.023 5 C -0.546 4.546 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.040 4.040 15 C -0.012 4.012 16 C -0.188 4.188 17 C -0.174 4.174 18 C -0.120 4.120 19 C -0.217 4.217 20 C -0.132 4.132 21 C -0.154 4.154 22 C -0.124 4.124 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.162 11.259 11.165 17.012 hybrid contribution 0.438 -0.238 -1.506 1.587 sum -5.724 11.021 9.659 15.733 Atomic orbital electron populations 1.21746 0.96331 1.01124 1.00410 1.21553 0.94177 0.98787 1.01207 1.18909 0.93997 0.90739 0.84700 1.02271 1.21428 0.92788 1.36359 1.04052 0.93427 1.25664 1.02165 0.95439 0.95606 1.70001 1.36145 1.40033 1.09882 0.85631 0.80989 0.78458 0.76986 1.19981 1.20919 1.19929 1.60572 1.34461 1.04135 1.31761 1.21731 0.98136 0.88780 0.95374 1.19295 0.97037 0.90304 0.94571 1.21772 0.94489 1.01377 1.01182 1.21577 0.96315 1.01698 0.97803 1.22128 0.99489 0.94218 0.96190 1.23286 1.03548 0.97015 0.97883 1.21314 1.01123 0.92362 0.98405 1.22444 1.01002 0.97129 0.94863 1.21286 1.02120 0.93000 0.96013 0.92299 0.92296 0.94784 0.91512 0.94296 0.93109 0.85294 0.94130 0.97920 0.92174 0.90622 0.93360 0.95005 0.91395 0.92284 0.88375 0.90985 0.90785 0.90601 0.89321 0.90103 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.63 71.98 0.69 -4.61 16 2 C -0.12 -5.71 5.38 30.59 0.16 -5.54 16 3 C 0.22 11.61 2.02 44.17 0.09 11.70 16 4 H -0.04 -2.34 7.91 -2.39 -0.02 -2.36 16 5 C -0.51 -29.01 8.37 25.60 0.21 -28.80 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.52 5.29 84.65 0.45 0.97 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.87 16 9 Si 0.95 45.31 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.68 -28.92 5.41 -495.43 -2.68 -31.60 16 14 C 0.09 3.56 3.24 86.30 0.28 3.84 16 15 C -0.01 -0.35 0.77 -52.93 -0.04 -0.39 16 16 C -0.13 -3.35 8.01 71.98 0.58 -2.77 16 17 C -0.12 -3.55 8.22 71.98 0.59 -2.96 16 18 C -0.12 -3.29 4.77 -15.88 -0.08 -3.37 16 19 C -0.20 -5.81 9.72 26.26 0.26 -5.55 16 20 C -0.10 -2.09 6.81 30.53 0.21 -1.88 16 21 C -0.12 -2.06 7.19 31.71 0.23 -1.84 16 22 C -0.09 -1.78 6.40 30.54 0.20 -1.59 16 23 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.06 1.96 6.65 -2.39 -0.02 1.94 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 3.66 5.94 -2.38 -0.01 3.64 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.33 12.47 4.93 -89.70 -0.44 12.02 16 30 H 0.04 1.87 7.40 -2.39 -0.02 1.85 16 31 H 0.00 0.11 7.79 -2.39 -0.02 0.09 16 32 H 0.06 1.57 6.72 -2.38 -0.02 1.56 16 33 H 0.07 1.57 7.42 -2.38 -0.02 1.55 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.65 8.01 -2.39 -0.02 1.63 16 37 H 0.06 1.96 7.60 -2.39 -0.02 1.94 16 38 H 0.10 3.33 6.77 -2.91 -0.02 3.31 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.44 7.39 -2.39 -0.02 1.42 16 44 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -62.01 335.44 3.91 -58.10 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.50 Total: 22.83 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.83 Total: -42.79 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.44 Total: -85.47 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.01 3.91 -58.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308764737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.040 kcal (2) G-P(sol) polarization free energy of solvation -62.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds