Wall clock time and date at job start Mon Mar 30 2020 07:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46990 * 2 1 4 4 H 1.09001 * 109.46990 * 55.02950 * 3 2 1 5 5 C 1.50709 * 109.46804 * 175.02611 * 3 2 1 6 6 H 1.08005 * 119.99641 * 120.00615 * 5 3 2 7 7 C 1.37876 * 120.00170 * 299.99934 * 5 3 2 8 8 N 1.31511 * 120.00238 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99940 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.46759 * 89.99992 * 9 7 5 11 11 H 1.48500 * 109.46821 * 209.99948 * 9 7 5 12 12 H 1.48502 * 109.46928 * 330.00162 * 9 7 5 13 13 N 1.46891 * 109.47479 * 295.02534 * 3 2 1 14 14 C 1.46897 * 111.00233 * 152.83115 * 13 3 2 15 15 C 1.53001 * 109.47113 * 185.61925 * 14 13 3 16 16 C 1.52997 * 109.47094 * 60.00123 * 15 14 13 17 17 C 1.52995 * 109.47201 * 300.00107 * 15 14 13 18 18 C 1.50700 * 109.47076 * 180.02562 * 15 14 13 19 19 C 1.30527 * 124.45042 * 359.97259 * 18 15 14 20 20 C 1.51100 * 111.10635 * 180.26498 * 19 18 15 21 21 C 1.54794 * 104.64595 * 343.20174 * 20 19 18 22 22 C 1.51105 * 124.44759 * 180.02562 * 18 15 14 23 23 H 1.08999 * 109.47190 * 56.16361 * 1 2 3 24 24 H 1.08996 * 109.47053 * 176.15955 * 1 2 3 25 25 H 1.08999 * 109.47551 * 296.16389 * 1 2 3 26 26 H 1.08994 * 109.47411 * 240.00059 * 2 1 3 27 27 H 1.08998 * 109.47071 * 119.99733 * 2 1 3 28 28 H 0.96992 * 120.00453 * 179.97438 * 8 7 5 29 29 H 1.00898 * 111.00545 * 276.78966 * 13 3 2 30 30 H 1.09002 * 109.46996 * 65.62417 * 14 13 3 31 31 H 1.08995 * 109.47438 * 305.61800 * 14 13 3 32 32 H 1.09004 * 109.46910 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47277 * 299.99819 * 16 15 14 34 34 H 1.08995 * 109.47181 * 60.00295 * 16 15 14 35 35 H 1.09002 * 109.47460 * 299.99846 * 17 15 14 36 36 H 1.08999 * 109.47140 * 60.00199 * 17 15 14 37 37 H 1.09004 * 109.47282 * 180.02562 * 17 15 14 38 38 H 1.08002 * 124.44632 * 0.02562 * 19 18 15 39 39 H 1.08999 * 110.38455 * 102.13932 * 20 19 18 40 40 H 1.09009 * 110.38544 * 224.50600 * 20 19 18 41 41 H 1.09005 * 111.24938 * 266.87272 * 21 20 19 42 42 H 1.08997 * 110.89844 * 142.88421 * 21 20 19 43 43 H 1.08998 * 110.38651 * 315.22213 * 22 18 15 44 44 H 1.08999 * 110.38825 * 77.49380 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1469 1.8891 -0.6531 7 6 4.1439 0.8782 1.2270 8 7 5.4545 0.8801 1.3347 9 14 3.0975 0.1084 2.5694 10 1 2.8766 -1.3276 2.2625 11 1 3.7954 0.2341 3.8742 12 1 1.7888 0.8069 2.6386 13 7 1.6509 2.0995 -1.2549 14 6 1.5221 3.5512 -1.0712 15 6 0.9821 4.1820 -2.3563 16 6 -0.3889 3.5854 -2.6803 17 6 1.9474 3.8974 -3.5087 18 6 0.8506 5.6714 -2.1680 19 6 1.1553 6.3065 -1.0692 20 6 0.9013 7.7894 -1.2095 21 6 0.7880 8.0244 -2.7353 22 6 0.3475 6.6256 -3.2262 23 1 -0.3633 0.5722 -0.8536 24 1 -0.3633 -1.0253 -0.0688 25 1 -0.3634 0.4531 0.9223 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8779 0.4823 2.1114 29 1 2.3043 1.8850 -1.9931 30 1 2.4989 3.9763 -0.8404 31 1 0.8344 3.7540 -0.2502 32 1 -0.7738 4.0351 -3.5956 33 1 -0.2934 2.5081 -2.8166 34 1 -1.0766 3.7881 -1.8593 35 1 2.9242 4.3225 -3.2779 36 1 2.0429 2.8202 -3.6450 37 1 1.5630 4.3472 -4.4242 38 1 1.5352 5.8337 -0.1756 39 1 -0.0278 8.0644 -0.7103 40 1 1.7362 8.3581 -0.7998 41 1 1.7499 8.3050 -3.1643 42 1 0.0285 8.7740 -2.9579 43 1 0.8051 6.3999 -4.1894 44 1 -0.7386 6.5718 -3.3006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308764738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:51 Heat of formation + Delta-G solvation = -4.276221 kcal Electronic energy + Delta-G solvation = -19463.048343 eV Core-core repulsion = 16800.674519 eV Total energy + Delta-G solvation = -2662.373824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.30670 -36.79199 -34.82265 -32.01596 -30.93476 -28.88479 -27.66344 -26.91703 -26.86478 -24.35483 -22.39026 -20.67851 -20.12382 -19.79781 -17.19591 -16.78706 -15.80202 -15.45390 -15.03704 -14.41715 -13.79913 -13.70300 -13.01773 -12.96044 -12.73075 -12.72225 -12.47224 -12.10382 -11.77177 -11.65270 -11.60177 -11.46071 -11.31003 -11.11451 -11.04384 -10.96797 -10.71589 -10.56911 -10.38449 -10.26799 -9.93642 -9.69154 -9.39626 -9.17443 -8.56047 -8.45760 -7.28519 -6.11377 -4.11937 2.46149 3.26822 3.37252 3.39869 4.38270 4.62109 4.71471 5.02610 5.06126 5.22452 5.32477 5.38191 5.51637 5.57576 5.66385 5.77266 5.78296 5.92084 5.92794 5.99309 6.04258 6.09438 6.09640 6.16674 6.19874 6.26307 6.30179 6.37235 6.44482 6.55921 6.62205 6.71552 6.72979 6.79720 6.94893 7.02065 7.14288 7.18094 7.31720 7.59111 8.08169 8.41853 8.53104 8.91726 9.52535 11.01639 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.005821 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.884594 B = 4808.792818 C = 5233.886499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.184 3.816 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.678 5.678 14 C 0.078 3.922 15 C -0.014 4.014 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.178 4.178 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.090 4.090 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 9.515 -7.652 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.047 0.953 5 C -0.582 4.582 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.308 5.308 14 C -0.052 4.052 15 C -0.015 4.015 16 C -0.180 4.180 17 C -0.194 4.194 18 C -0.116 4.116 19 C -0.196 4.196 20 C -0.134 4.134 21 C -0.163 4.163 22 C -0.127 4.127 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.589 9.347 -7.452 16.650 hybrid contribution 0.679 -0.242 1.027 1.255 sum -10.911 9.105 -6.425 15.595 Atomic orbital electron populations 1.21739 0.97637 0.99395 1.01323 1.21803 0.93779 0.99421 1.00257 1.19546 0.94174 0.90585 0.88267 0.95258 1.21751 0.90564 1.38832 1.07083 0.91024 1.25007 0.94743 0.95337 0.97938 1.69915 1.08850 1.45158 1.29755 0.86813 0.80585 0.79872 0.80699 1.20486 1.22694 1.18997 1.60736 1.53876 1.07039 1.09151 1.21814 0.98881 0.89615 0.94937 1.19340 0.96271 0.89499 0.96375 1.21658 0.94887 1.01750 0.99726 1.21804 0.98674 1.01978 0.96895 1.21963 0.99076 0.94821 0.95714 1.23181 1.02302 0.95144 0.98987 1.21324 1.01237 0.94710 0.96086 1.22467 1.01218 0.96755 0.95817 1.21244 1.00406 0.93047 0.98016 0.91694 0.94916 0.94429 0.92466 0.93897 0.92691 0.84865 0.94932 0.92201 0.94108 0.90942 0.93428 0.92946 0.91659 0.93294 0.85627 0.91225 0.91599 0.91331 0.91468 0.91451 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.84 37.16 0.37 -2.28 16 2 C -0.11 -2.50 5.11 -26.73 -0.14 -2.64 16 3 C 0.18 4.25 1.57 -68.86 -0.11 4.14 16 4 H 0.03 0.72 6.73 -51.93 -0.35 0.37 16 5 C -0.54 -14.96 9.10 -34.44 -0.31 -15.27 16 6 H 0.07 2.14 7.95 -52.48 -0.42 1.73 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.89 22.17 24.41 -169.99 -4.15 18.02 16 10 H -0.28 -6.77 6.83 56.52 0.39 -6.38 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.68 -13.24 4.77 -107.95 -0.51 -13.76 16 14 C 0.08 1.40 3.29 -3.82 -0.01 1.38 16 15 C -0.01 -0.21 0.77 -155.66 -0.12 -0.33 16 16 C -0.12 -1.68 8.22 37.16 0.31 -1.38 16 17 C -0.14 -1.92 8.01 37.16 0.30 -1.62 16 18 C -0.12 -1.58 4.77 -100.74 -0.48 -2.06 16 19 C -0.18 -2.49 9.71 -35.70 -0.35 -2.83 16 20 C -0.10 -1.10 6.82 -26.74 -0.18 -1.28 16 21 C -0.13 -1.28 7.20 -24.92 -0.18 -1.46 16 22 C -0.09 -1.02 6.39 -26.81 -0.17 -1.19 16 23 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 1.00 3.21 -51.93 -0.17 0.83 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.33 6.61 6.66 -39.29 -0.26 6.35 16 30 H 0.03 0.66 7.78 -51.93 -0.40 0.26 16 31 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 32 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 33 H 0.07 1.05 7.60 -51.93 -0.39 0.65 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 37 H 0.05 0.60 7.41 -51.93 -0.39 0.21 16 38 H 0.13 1.90 6.77 -52.49 -0.36 1.55 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.73 7.39 -51.93 -0.38 0.35 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -28.75 331.01 -8.16 -36.92 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.08 Total: 5.33 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -1.18 Total: -24.83 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.26 Total: -40.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.15 Total: 18.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.75 -8.16 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308764738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.642 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds