Wall clock time and date at job start Mon Mar 30 2020 07:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46990 * 2 1 4 4 H 1.09001 * 109.46990 * 55.02950 * 3 2 1 5 5 C 1.50709 * 109.46804 * 175.02611 * 3 2 1 6 6 H 1.08005 * 119.99641 * 120.00615 * 5 3 2 7 7 C 1.37876 * 120.00170 * 299.99934 * 5 3 2 8 8 N 1.31511 * 120.00238 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99940 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.46759 * 89.99992 * 9 7 5 11 11 H 1.48500 * 109.46821 * 209.99948 * 9 7 5 12 12 H 1.48502 * 109.46928 * 330.00162 * 9 7 5 13 13 N 1.46891 * 109.47479 * 295.02534 * 3 2 1 14 14 C 1.46897 * 111.00233 * 152.83115 * 13 3 2 15 15 C 1.53001 * 109.47113 * 185.61925 * 14 13 3 16 16 C 1.52997 * 109.47094 * 60.00123 * 15 14 13 17 17 C 1.52995 * 109.47201 * 300.00107 * 15 14 13 18 18 C 1.50700 * 109.47076 * 180.02562 * 15 14 13 19 19 C 1.30527 * 124.45042 * 359.97259 * 18 15 14 20 20 C 1.51100 * 111.10635 * 180.26498 * 19 18 15 21 21 C 1.54794 * 104.64595 * 343.20174 * 20 19 18 22 22 C 1.51105 * 124.44759 * 180.02562 * 18 15 14 23 23 H 1.08999 * 109.47190 * 56.16361 * 1 2 3 24 24 H 1.08996 * 109.47053 * 176.15955 * 1 2 3 25 25 H 1.08999 * 109.47551 * 296.16389 * 1 2 3 26 26 H 1.08994 * 109.47411 * 240.00059 * 2 1 3 27 27 H 1.08998 * 109.47071 * 119.99733 * 2 1 3 28 28 H 0.96992 * 120.00453 * 179.97438 * 8 7 5 29 29 H 1.00898 * 111.00545 * 276.78966 * 13 3 2 30 30 H 1.09002 * 109.46996 * 65.62417 * 14 13 3 31 31 H 1.08995 * 109.47438 * 305.61800 * 14 13 3 32 32 H 1.09004 * 109.46910 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47277 * 299.99819 * 16 15 14 34 34 H 1.08995 * 109.47181 * 60.00295 * 16 15 14 35 35 H 1.09002 * 109.47460 * 299.99846 * 17 15 14 36 36 H 1.08999 * 109.47140 * 60.00199 * 17 15 14 37 37 H 1.09004 * 109.47282 * 180.02562 * 17 15 14 38 38 H 1.08002 * 124.44632 * 0.02562 * 19 18 15 39 39 H 1.08999 * 110.38455 * 102.13932 * 20 19 18 40 40 H 1.09009 * 110.38544 * 224.50600 * 20 19 18 41 41 H 1.09005 * 111.24938 * 266.87272 * 21 20 19 42 42 H 1.08997 * 110.89844 * 142.88421 * 21 20 19 43 43 H 1.08998 * 110.38651 * 315.22213 * 22 18 15 44 44 H 1.08999 * 110.38825 * 77.49380 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1469 1.8891 -0.6531 7 6 4.1439 0.8782 1.2270 8 7 5.4545 0.8801 1.3347 9 14 3.0975 0.1084 2.5694 10 1 2.8766 -1.3276 2.2625 11 1 3.7954 0.2341 3.8742 12 1 1.7888 0.8069 2.6386 13 7 1.6509 2.0995 -1.2549 14 6 1.5221 3.5512 -1.0712 15 6 0.9821 4.1820 -2.3563 16 6 -0.3889 3.5854 -2.6803 17 6 1.9474 3.8974 -3.5087 18 6 0.8506 5.6714 -2.1680 19 6 1.1553 6.3065 -1.0692 20 6 0.9013 7.7894 -1.2095 21 6 0.7880 8.0244 -2.7353 22 6 0.3475 6.6256 -3.2262 23 1 -0.3633 0.5722 -0.8536 24 1 -0.3633 -1.0253 -0.0688 25 1 -0.3634 0.4531 0.9223 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8779 0.4823 2.1114 29 1 2.3043 1.8850 -1.9931 30 1 2.4989 3.9763 -0.8404 31 1 0.8344 3.7540 -0.2502 32 1 -0.7738 4.0351 -3.5956 33 1 -0.2934 2.5081 -2.8166 34 1 -1.0766 3.7881 -1.8593 35 1 2.9242 4.3225 -3.2779 36 1 2.0429 2.8202 -3.6450 37 1 1.5630 4.3472 -4.4242 38 1 1.5352 5.8337 -0.1756 39 1 -0.0278 8.0644 -0.7103 40 1 1.7362 8.3581 -0.7998 41 1 1.7499 8.3050 -3.1643 42 1 0.0285 8.7740 -2.9579 43 1 0.8051 6.3999 -4.1894 44 1 -0.7386 6.5718 -3.3006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308764738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:51 Heat of formation + Delta-G solvation = -20.535789 kcal Electronic energy + Delta-G solvation = -19463.753410 eV Core-core repulsion = 16800.674519 eV Total energy + Delta-G solvation = -2663.078892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43081 -38.30901 -36.26500 -34.14761 -32.46467 -29.87879 -29.06249 -28.34437 -28.01769 -25.91327 -24.14980 -21.81490 -21.53715 -21.20266 -19.13504 -18.11275 -17.27906 -16.73437 -16.33847 -15.95448 -15.42430 -15.16983 -14.88241 -14.30142 -14.15421 -13.96940 -13.68159 -13.51864 -13.31432 -13.10980 -12.89988 -12.74492 -12.61242 -12.41964 -12.39091 -12.19919 -12.01446 -11.88819 -11.73543 -11.66597 -11.47260 -11.31359 -11.22568 -11.11716 -10.67359 -9.49872 -9.05030 -8.35427 -6.40124 1.27308 1.32185 1.38114 1.42876 2.27437 3.00099 3.43021 3.72266 3.84095 4.09619 4.19403 4.24153 4.25996 4.39807 4.47141 4.48226 4.61507 4.68205 4.78945 4.82837 4.90176 4.92979 4.95740 4.96511 5.02260 5.07366 5.13363 5.15697 5.16330 5.20282 5.29764 5.33270 5.40821 5.44738 5.46421 5.50235 5.57919 5.67344 5.84677 6.07568 6.09810 6.40739 6.62439 6.80302 7.28899 8.80979 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.005821 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.884594 B = 4808.792818 C = 5233.886499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.189 3.811 4 H 0.018 0.982 5 C -0.544 4.544 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.301 1.301 12 H -0.250 1.250 13 N -0.660 5.660 14 C 0.084 3.916 15 C -0.010 4.010 16 C -0.116 4.116 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.199 4.199 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.087 4.087 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.332 0.668 30 H -0.002 1.002 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 9.864 -8.610 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C 0.079 3.921 4 H 0.036 0.964 5 C -0.583 4.583 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.229 1.229 12 H -0.174 1.174 13 N -0.289 5.289 14 C -0.046 4.046 15 C -0.011 4.011 16 C -0.173 4.173 17 C -0.190 4.190 18 C -0.120 4.120 19 C -0.217 4.217 20 C -0.132 4.132 21 C -0.157 4.157 22 C -0.124 4.124 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.452 9.702 -8.429 19.340 hybrid contribution 1.645 -0.300 1.281 2.106 sum -12.807 9.402 -7.148 17.422 Atomic orbital electron populations 1.21650 0.94507 1.01260 1.01778 1.21728 0.96530 0.97426 0.99613 1.19421 0.91033 0.92227 0.89430 0.96378 1.22067 0.92884 1.37501 1.05805 0.95034 1.25853 0.95787 0.96109 1.00511 1.70060 1.10839 1.46954 1.30858 0.85816 0.79323 0.79714 0.77342 1.18971 1.22870 1.17412 1.60774 1.52885 1.07816 1.07444 1.21802 0.97109 0.88618 0.97105 1.19277 0.97047 0.90379 0.94367 1.21595 0.93720 1.01291 1.00736 1.21777 0.97787 1.01711 0.97751 1.22123 0.98890 0.94418 0.96615 1.23292 1.02860 0.97146 0.98437 1.21346 1.01781 0.92560 0.97514 1.22484 1.02093 0.96760 0.94360 1.21280 1.01186 0.92661 0.97247 0.90888 0.92414 0.94294 0.92553 0.95147 0.92601 0.85017 0.98357 0.92870 0.91694 0.91680 0.93728 0.94676 0.92206 0.90649 0.88176 0.90164 0.91476 0.91212 0.89141 0.90598 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.84 71.98 0.71 -3.85 16 2 C -0.11 -4.85 5.11 30.59 0.16 -4.69 16 3 C 0.19 8.80 1.57 44.17 0.07 8.87 16 4 H 0.02 0.90 6.73 -2.39 -0.02 0.88 16 5 C -0.54 -31.01 9.10 25.60 0.23 -30.77 16 6 H 0.03 2.00 7.95 -2.91 -0.02 1.97 16 7 C 0.02 0.91 5.45 84.65 0.46 1.37 16 8 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 9 Si 0.95 45.96 24.41 68.60 1.67 47.63 16 10 H -0.26 -12.10 6.83 99.48 0.68 -11.42 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 13 N -0.66 -25.99 4.77 -495.46 -2.36 -28.35 16 14 C 0.08 3.09 3.29 86.30 0.28 3.38 16 15 C -0.01 -0.29 0.77 -52.93 -0.04 -0.33 16 16 C -0.12 -2.91 8.22 71.98 0.59 -2.32 16 17 C -0.13 -3.64 8.01 71.98 0.58 -3.06 16 18 C -0.12 -3.15 4.77 -15.87 -0.08 -3.23 16 19 C -0.20 -5.58 9.71 26.26 0.26 -5.32 16 20 C -0.10 -2.03 6.82 30.59 0.21 -1.82 16 21 C -0.12 -2.11 7.20 31.77 0.23 -1.88 16 22 C -0.09 -1.71 6.39 30.54 0.20 -1.51 16 23 H 0.07 2.35 7.65 -2.39 -0.02 2.33 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.03 1.36 3.21 -2.39 -0.01 1.35 16 28 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.33 13.45 6.66 -89.70 -0.60 12.86 16 30 H 0.00 -0.08 7.78 -2.39 -0.02 -0.10 16 31 H 0.05 2.02 7.55 -2.39 -0.02 2.00 16 32 H 0.06 1.33 8.01 -2.39 -0.02 1.31 16 33 H 0.06 1.73 7.60 -2.39 -0.02 1.71 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.69 6.71 -2.39 -0.02 1.67 16 37 H 0.07 1.66 7.41 -2.39 -0.02 1.65 16 38 H 0.10 3.24 6.77 -2.91 -0.02 3.22 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.38 7.39 -2.39 -0.02 1.37 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.77 331.01 3.73 -60.04 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.26 Total: 25.41 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 3.85 Total: -45.18 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.06 Total: -87.90 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -63.77 3.73 -60.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308764738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.504 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds