Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46727 * 2 1 4 4 H 1.09001 * 109.47536 * 305.87278 * 3 2 1 5 5 C 1.50702 * 109.46587 * 185.87977 * 3 2 1 6 6 H 1.08001 * 119.99659 * 242.37963 * 5 3 2 7 7 C 1.37872 * 120.00703 * 62.38033 * 5 3 2 8 8 N 1.31507 * 120.00638 * 194.57138 * 7 5 3 9 9 Si 1.86805 * 119.99653 * 14.57567 * 7 5 3 10 10 H 1.48500 * 109.47393 * 93.89033 * 9 7 5 11 11 H 1.48493 * 109.47111 * 213.89300 * 9 7 5 12 12 H 1.48501 * 109.47063 * 333.89069 * 9 7 5 13 13 N 1.46894 * 109.47195 * 65.88276 * 3 2 1 14 14 C 1.46903 * 110.99793 * 255.24839 * 13 3 2 15 15 H 1.09003 * 109.47025 * 42.21515 * 14 13 3 16 16 C 1.53003 * 109.47020 * 282.21481 * 14 13 3 17 17 C 1.53000 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47187 * 60.00349 * 17 16 14 19 19 C 1.53003 * 109.46844 * 299.99774 * 18 17 16 20 20 C 1.52994 * 109.47316 * 59.99969 * 19 18 17 21 21 H 1.09003 * 109.47216 * 60.00234 * 20 19 18 22 22 C 1.52998 * 109.47597 * 179.97438 * 20 19 18 23 23 C 1.52998 * 117.50164 * 248.75342 * 22 20 19 24 24 C 1.52996 * 117.50464 * 180.08719 * 22 20 19 25 25 H 1.09009 * 109.47041 * 179.57083 * 1 2 3 26 26 H 1.08999 * 109.47082 * 299.56689 * 1 2 3 27 27 H 1.08996 * 109.47710 * 59.56822 * 1 2 3 28 28 H 1.09001 * 109.46933 * 240.00385 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00123 * 2 1 3 30 30 H 0.96996 * 120.00816 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00593 * 131.29284 * 13 3 2 32 32 H 1.09003 * 109.46787 * 300.00162 * 16 14 13 33 33 H 1.09000 * 109.46902 * 60.00094 * 16 14 13 34 34 H 1.08994 * 109.46903 * 299.99831 * 17 16 14 35 35 H 1.08996 * 109.46799 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.47014 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.46921 * 59.99341 * 18 17 16 38 38 H 1.09003 * 109.47250 * 300.00204 * 19 18 17 39 39 H 1.09002 * 109.47150 * 180.02562 * 19 18 17 40 40 H 1.09003 * 115.54463 * 34.41970 * 22 20 19 41 41 H 1.09002 * 117.50070 * 359.97438 * 23 22 20 42 42 H 1.08994 * 117.49878 * 145.01779 * 23 22 20 43 43 H 1.08997 * 117.49842 * 214.98117 * 24 22 20 44 44 H 1.09004 * 117.49822 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5932 1.9859 -0.8327 5 6 3.5399 1.4450 -0.1456 6 1 4.1581 1.8510 0.6415 7 6 4.1230 0.9291 -1.2834 8 7 5.4112 0.6650 -1.3003 9 14 3.0833 0.6052 -2.8011 10 1 3.1443 1.7830 -3.7035 11 1 3.6036 -0.5903 -3.5117 12 1 1.6753 0.3655 -2.3946 13 7 1.6695 2.0928 1.2640 14 6 0.5501 3.0238 1.0688 15 1 -0.1907 2.5686 0.4115 16 6 1.0670 4.3174 0.4361 17 6 -0.0990 5.2869 0.2322 18 6 -0.7424 5.6021 1.5840 19 6 -1.2594 4.3085 2.2168 20 6 -0.0935 3.3391 2.4206 21 1 0.6470 3.7945 3.0782 22 6 -0.6102 2.0458 3.0540 23 6 -0.1918 1.7486 4.4953 24 6 0.4104 0.9429 3.3415 25 1 -0.3633 -1.0277 -0.0077 26 1 -0.3633 0.5071 0.8938 27 1 -0.3634 0.5205 -0.8860 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8215 0.3017 -2.1006 31 1 2.4625 2.5620 1.6753 32 1 1.8079 4.7726 1.0934 33 1 1.5251 4.0929 -0.5272 34 1 -0.8394 4.8314 -0.4253 35 1 0.2693 6.2082 -0.2190 36 1 -1.5734 6.2924 1.4387 37 1 -0.0019 6.0575 2.2415 38 1 -1.9999 3.8530 1.5592 39 1 -1.7182 4.5331 3.1797 40 1 -1.6099 1.7386 2.7466 41 1 0.4520 2.4743 4.9923 42 1 -0.9160 1.2456 5.1361 43 1 0.0822 -0.0898 3.2237 44 1 1.4502 1.1385 3.0790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = 2.983284 kcal Electronic energy + Delta-G solvation = -20251.383346 eV Core-core repulsion = 17589.324317 eV Total energy + Delta-G solvation = -2662.059028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.33664 -36.00271 -35.64096 -32.34613 -31.41704 -30.24209 -28.51375 -26.22434 -22.90454 -22.62206 -21.74492 -21.42992 -20.06946 -19.79899 -19.10211 -16.88442 -15.47334 -15.28368 -14.63215 -14.30492 -13.90081 -13.82467 -13.38803 -12.94329 -12.79788 -12.75122 -12.47846 -12.08025 -11.88655 -11.54696 -11.32861 -11.04843 -10.88128 -10.86553 -10.80025 -10.72400 -10.39150 -10.17789 -10.09343 -10.07193 -9.79741 -9.58210 -9.40846 -9.07652 -9.01210 -8.42155 -7.19180 -6.12015 -4.07089 3.27380 3.37639 3.41766 4.34451 4.41462 4.83306 4.90385 5.04653 5.20260 5.32051 5.38678 5.44145 5.50972 5.65047 5.68668 5.80934 5.83928 5.86299 5.95341 5.95934 6.05574 6.12670 6.17172 6.26120 6.28762 6.32258 6.36027 6.40501 6.50483 6.55991 6.58615 6.67562 6.78164 6.82655 6.88542 7.06794 7.16376 7.19883 7.52101 7.68794 8.06531 8.40837 8.64588 8.97305 9.54787 11.00909 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.007955 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.879943 B = 3519.158777 C = 4081.815173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C 0.192 3.808 4 H 0.005 0.995 5 C -0.531 4.531 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.666 5.666 14 C 0.097 3.903 15 H 0.072 0.928 16 C -0.150 4.150 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.044 4.044 21 H 0.065 0.935 22 C -0.139 4.139 23 C -0.203 4.203 24 C -0.145 4.145 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.263 0.737 31 H 0.336 0.664 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.981 5.769 6.239 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.083 3.917 4 H 0.023 0.977 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.171 1.171 13 N -0.295 5.295 14 C -0.014 4.014 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.063 4.063 21 H 0.083 0.917 22 C -0.157 4.157 23 C -0.240 4.240 24 C -0.182 4.182 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.213 5.148 6.332 15.529 hybrid contribution 0.021 0.504 -1.498 1.581 sum -13.191 5.652 4.833 15.143 Atomic orbital electron populations 1.21926 0.98721 0.99309 1.01030 1.21849 0.92708 0.99398 1.00500 1.19420 0.95030 0.90711 0.86523 0.97731 1.21295 0.89708 1.41311 1.04543 0.90808 1.24896 0.94675 0.94262 0.98698 1.69975 1.11230 1.43132 1.28625 0.87275 0.82661 0.77737 0.83558 1.21102 1.21461 1.17071 1.60813 1.09809 1.31580 1.27307 1.21603 0.94583 0.90604 0.94636 0.90994 1.22335 0.97581 0.97019 1.02022 1.21496 0.98054 0.99048 0.96824 1.21528 0.99745 0.97241 0.96988 1.21541 0.97817 0.95335 1.00091 1.20695 0.96056 0.93011 0.96570 0.91686 1.21998 0.98877 0.97851 0.96953 1.23022 1.04454 1.05205 0.91363 1.23204 1.01778 0.94655 0.98532 0.95097 0.91549 0.94848 0.93556 0.92417 0.92756 0.84603 0.92249 0.91456 0.92426 0.92709 0.92686 0.92260 0.92324 0.92351 0.89468 0.89756 0.90412 0.90546 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.92 37.16 0.33 -2.46 16 2 C -0.11 -2.28 4.80 -26.73 -0.13 -2.41 16 3 C 0.19 4.26 1.40 -68.86 -0.10 4.16 16 4 H 0.01 0.12 5.60 -51.93 -0.29 -0.17 16 5 C -0.53 -14.17 9.06 -34.44 -0.31 -14.48 16 6 H 0.07 2.14 7.63 -52.49 -0.40 1.74 16 7 C 0.08 2.18 5.33 -17.82 -0.10 2.08 16 8 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 9 Si 0.86 21.03 25.71 -169.99 -4.37 16.66 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.25 -5.70 5.35 56.52 0.30 -5.39 16 13 N -0.67 -12.31 2.44 -100.95 -0.25 -12.56 16 14 C 0.10 1.54 1.12 -67.71 -0.08 1.46 16 15 H 0.07 1.24 6.51 -51.93 -0.34 0.90 16 16 C -0.15 -2.36 5.15 -26.73 -0.14 -2.50 16 17 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 18 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.11 -1.31 5.19 -26.73 -0.14 -1.45 16 20 C -0.04 -0.61 2.13 -90.62 -0.19 -0.80 16 21 H 0.06 0.93 7.90 -51.93 -0.41 0.52 16 22 C -0.14 -1.91 4.37 -90.62 -0.40 -2.30 16 23 C -0.20 -2.66 10.18 -26.69 -0.27 -2.93 16 24 C -0.14 -2.16 8.14 -26.69 -0.22 -2.38 16 25 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 1.14 4.82 -51.93 -0.25 0.89 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.07 4.60 -51.93 -0.24 0.83 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.34 6.51 7.73 -39.29 -0.30 6.20 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.22 7.25 -51.93 -0.38 0.84 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.13 2.21 6.00 -51.93 -0.31 1.90 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -27.32 319.53 -9.14 -36.46 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.07 Total: 7.81 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.05 Total: -27.18 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.53 Total: -38.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.37 Total: 16.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.32 -9.14 -36.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.446 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds