Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46727 * 2 1 4 4 H 1.09001 * 109.47536 * 305.87278 * 3 2 1 5 5 C 1.50702 * 109.46587 * 185.87977 * 3 2 1 6 6 H 1.08001 * 119.99659 * 242.37963 * 5 3 2 7 7 C 1.37872 * 120.00703 * 62.38033 * 5 3 2 8 8 N 1.31507 * 120.00638 * 194.57138 * 7 5 3 9 9 Si 1.86805 * 119.99653 * 14.57567 * 7 5 3 10 10 H 1.48500 * 109.47393 * 93.89033 * 9 7 5 11 11 H 1.48493 * 109.47111 * 213.89300 * 9 7 5 12 12 H 1.48501 * 109.47063 * 333.89069 * 9 7 5 13 13 N 1.46894 * 109.47195 * 65.88276 * 3 2 1 14 14 C 1.46903 * 110.99793 * 255.24839 * 13 3 2 15 15 H 1.09003 * 109.47025 * 42.21515 * 14 13 3 16 16 C 1.53003 * 109.47020 * 282.21481 * 14 13 3 17 17 C 1.53000 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47187 * 60.00349 * 17 16 14 19 19 C 1.53003 * 109.46844 * 299.99774 * 18 17 16 20 20 C 1.52994 * 109.47316 * 59.99969 * 19 18 17 21 21 H 1.09003 * 109.47216 * 60.00234 * 20 19 18 22 22 C 1.52998 * 109.47597 * 179.97438 * 20 19 18 23 23 C 1.52998 * 117.50164 * 248.75342 * 22 20 19 24 24 C 1.52996 * 117.50464 * 180.08719 * 22 20 19 25 25 H 1.09009 * 109.47041 * 179.57083 * 1 2 3 26 26 H 1.08999 * 109.47082 * 299.56689 * 1 2 3 27 27 H 1.08996 * 109.47710 * 59.56822 * 1 2 3 28 28 H 1.09001 * 109.46933 * 240.00385 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00123 * 2 1 3 30 30 H 0.96996 * 120.00816 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00593 * 131.29284 * 13 3 2 32 32 H 1.09003 * 109.46787 * 300.00162 * 16 14 13 33 33 H 1.09000 * 109.46902 * 60.00094 * 16 14 13 34 34 H 1.08994 * 109.46903 * 299.99831 * 17 16 14 35 35 H 1.08996 * 109.46799 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.47014 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.46921 * 59.99341 * 18 17 16 38 38 H 1.09003 * 109.47250 * 300.00204 * 19 18 17 39 39 H 1.09002 * 109.47150 * 180.02562 * 19 18 17 40 40 H 1.09003 * 115.54463 * 34.41970 * 22 20 19 41 41 H 1.09002 * 117.50070 * 359.97438 * 23 22 20 42 42 H 1.08994 * 117.49878 * 145.01779 * 23 22 20 43 43 H 1.08997 * 117.49842 * 214.98117 * 24 22 20 44 44 H 1.09004 * 117.49822 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5932 1.9859 -0.8327 5 6 3.5399 1.4450 -0.1456 6 1 4.1581 1.8510 0.6415 7 6 4.1230 0.9291 -1.2834 8 7 5.4112 0.6650 -1.3003 9 14 3.0833 0.6052 -2.8011 10 1 3.1443 1.7830 -3.7035 11 1 3.6036 -0.5903 -3.5117 12 1 1.6753 0.3655 -2.3946 13 7 1.6695 2.0928 1.2640 14 6 0.5501 3.0238 1.0688 15 1 -0.1907 2.5686 0.4115 16 6 1.0670 4.3174 0.4361 17 6 -0.0990 5.2869 0.2322 18 6 -0.7424 5.6021 1.5840 19 6 -1.2594 4.3085 2.2168 20 6 -0.0935 3.3391 2.4206 21 1 0.6470 3.7945 3.0782 22 6 -0.6102 2.0458 3.0540 23 6 -0.1918 1.7486 4.4953 24 6 0.4104 0.9429 3.3415 25 1 -0.3633 -1.0277 -0.0077 26 1 -0.3633 0.5071 0.8938 27 1 -0.3634 0.5205 -0.8860 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8215 0.3017 -2.1006 31 1 2.4625 2.5620 1.6753 32 1 1.8079 4.7726 1.0934 33 1 1.5251 4.0929 -0.5272 34 1 -0.8394 4.8314 -0.4253 35 1 0.2693 6.2082 -0.2190 36 1 -1.5734 6.2924 1.4387 37 1 -0.0019 6.0575 2.2415 38 1 -1.9999 3.8530 1.5592 39 1 -1.7182 4.5331 3.1797 40 1 -1.6099 1.7386 2.7466 41 1 0.4520 2.4743 4.9923 42 1 -0.9160 1.2456 5.1361 43 1 0.0822 -0.0898 3.2237 44 1 1.4502 1.1385 3.0790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = -10.865062 kcal Electronic energy + Delta-G solvation = -20251.983855 eV Core-core repulsion = 17589.324317 eV Total energy + Delta-G solvation = -2662.659538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56535 -37.45350 -36.90386 -34.31896 -32.97228 -31.33798 -30.04723 -27.89619 -24.39730 -23.98919 -23.01436 -22.57849 -21.51827 -20.91526 -20.56576 -18.84787 -17.09267 -16.69852 -15.82385 -15.74303 -15.27501 -15.05772 -14.91421 -14.58237 -14.27054 -14.12154 -13.76001 -13.55924 -13.47636 -13.00552 -12.74365 -12.57065 -12.41239 -12.32746 -12.05996 -11.87574 -11.76458 -11.63505 -11.44376 -11.32071 -11.15315 -11.08009 -11.03099 -10.70862 -10.58932 -10.25606 -8.72741 -8.31234 -6.29338 1.30562 1.35661 1.45601 2.34019 3.04087 3.21875 3.59148 3.78668 3.97547 4.20202 4.24038 4.31580 4.40301 4.51826 4.52372 4.57409 4.59358 4.65651 4.71955 4.75623 4.78470 4.86471 4.94959 5.01475 5.04212 5.10707 5.24026 5.25731 5.27662 5.30724 5.36079 5.42115 5.45028 5.49756 5.51116 5.56585 5.63360 5.70711 5.84943 5.94384 6.10858 6.56514 6.77128 6.96457 7.36840 8.85060 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.007955 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.879943 B = 3519.158777 C = 4081.815173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.202 3.798 4 H -0.001 1.001 5 C -0.528 4.528 6 H 0.037 0.963 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.920 3.080 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.223 1.223 13 N -0.657 5.657 14 C 0.098 3.902 15 H 0.067 0.933 16 C -0.149 4.149 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.038 4.038 21 H 0.059 0.941 22 C -0.135 4.135 23 C -0.186 4.186 24 C -0.163 4.163 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.328 0.672 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 6.438 6.662 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.092 3.908 4 H 0.017 0.983 5 C -0.566 4.566 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.745 3.255 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.146 1.146 13 N -0.285 5.285 14 C -0.012 4.012 15 H 0.085 0.915 16 C -0.188 4.188 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.057 4.057 21 H 0.077 0.923 22 C -0.153 4.153 23 C -0.223 4.223 24 C -0.200 4.200 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.585 5.827 6.770 18.837 hybrid contribution 1.141 0.332 -1.531 1.938 sum -15.444 6.159 5.239 17.433 Atomic orbital electron populations 1.21822 0.95689 1.00812 1.01693 1.21749 0.95374 0.98027 0.99236 1.19227 0.91776 0.91839 0.87949 0.98330 1.21632 0.92104 1.39675 1.03196 0.94499 1.25702 0.95682 0.94496 1.01808 1.70110 1.13258 1.45260 1.29543 0.86311 0.82242 0.77360 0.79583 1.21006 1.21537 1.14602 1.60859 1.10022 1.32520 1.25074 1.21673 0.93329 0.89955 0.96251 0.91485 1.22275 0.98635 0.97791 1.00104 1.21472 0.96893 0.98454 0.98211 1.21511 1.00359 0.97530 0.95681 1.21522 0.96828 0.94758 1.01192 1.20636 0.96655 0.93745 0.94660 0.92293 1.22045 0.98712 0.97006 0.97569 1.23046 1.04003 1.04209 0.91011 1.23033 1.00787 0.95111 1.01089 0.93213 0.90463 0.94559 0.95139 0.93436 0.92784 0.85495 0.92834 0.94547 0.92090 0.92001 0.90478 0.92240 0.91825 0.90645 0.88442 0.89571 0.88730 0.90733 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.92 71.98 0.64 -4.24 16 2 C -0.11 -4.46 4.80 30.59 0.15 -4.31 16 3 C 0.20 9.01 1.40 44.17 0.06 9.08 16 4 H 0.00 -0.04 5.60 -2.39 -0.01 -0.06 16 5 C -0.53 -29.26 9.06 25.60 0.23 -29.03 16 6 H 0.04 2.26 7.63 -2.91 -0.02 2.24 16 7 C 0.02 1.23 5.33 84.65 0.45 1.68 16 8 N -0.94 -58.69 13.96 21.44 0.30 -58.39 16 9 Si 0.92 43.96 25.71 68.60 1.76 45.72 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 12 H -0.22 -9.73 5.35 99.48 0.53 -9.20 16 13 N -0.66 -24.50 2.44 -473.29 -1.16 -25.65 16 14 C 0.10 3.03 1.12 44.92 0.05 3.08 16 15 H 0.07 2.17 6.51 -2.39 -0.02 2.15 16 16 C -0.15 -4.60 5.15 30.60 0.16 -4.44 16 17 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 18 C -0.11 -2.22 5.92 30.60 0.18 -2.04 16 19 C -0.11 -2.12 5.19 30.59 0.16 -1.96 16 20 C -0.04 -0.96 2.13 -10.80 -0.02 -0.98 16 21 H 0.06 1.57 7.90 -2.39 -0.02 1.55 16 22 C -0.14 -3.36 4.37 -10.80 -0.05 -3.41 16 23 C -0.19 -4.37 10.18 30.62 0.31 -4.06 16 24 C -0.16 -4.67 8.14 30.62 0.25 -4.42 16 25 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 2.46 4.82 -2.39 -0.01 2.44 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 1.37 4.60 -2.39 -0.01 1.36 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.33 13.21 7.73 -89.70 -0.69 12.51 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.33 7.25 -2.39 -0.02 1.31 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 2.27 8.11 -2.39 -0.02 2.26 16 41 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 3.59 6.00 -2.38 -0.01 3.58 16 Total: -1.00 -60.42 319.53 3.75 -56.67 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.09 Total: 29.19 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 2.75 Total: -47.54 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -0.86 Total: -84.04 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.76 Total: 45.72 kcal Total: -60.42 3.75 -56.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.807 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds