Wall clock time and date at job start Mon Mar 30 2020 07:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 H 1.08994 * 109.47062 * 175.14127 * 3 2 1 5 5 C 1.50705 * 109.47188 * 55.13715 * 3 2 1 6 6 H 1.07995 * 120.00379 * 245.73603 * 5 3 2 7 7 C 1.37880 * 119.99687 * 65.74196 * 5 3 2 8 8 N 1.31513 * 120.00326 * 5.51548 * 7 5 3 9 9 Si 1.86797 * 119.99808 * 185.52285 * 7 5 3 10 10 H 1.48497 * 109.47073 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47121 * 59.99580 * 9 7 5 12 12 H 1.48496 * 109.47091 * 299.99651 * 9 7 5 13 13 N 1.46897 * 109.46780 * 295.14122 * 3 2 1 14 14 C 1.46903 * 110.99997 * 279.70511 * 13 3 2 15 15 H 1.08997 * 109.46886 * 39.87578 * 14 13 3 16 16 C 1.53005 * 109.47182 * 279.87807 * 14 13 3 17 17 C 1.52997 * 109.47229 * 300.00211 * 16 14 13 18 18 C 1.53001 * 109.46884 * 299.99740 * 17 16 14 19 19 C 1.53007 * 109.47346 * 60.00141 * 18 17 16 20 20 C 1.53001 * 109.47251 * 159.87870 * 14 13 3 21 21 H 1.08999 * 109.47246 * 180.02562 * 20 14 13 22 22 C 1.52996 * 109.47030 * 299.99930 * 20 14 13 23 23 C 1.53002 * 117.49911 * 248.74591 * 22 20 14 24 24 C 1.52995 * 117.49927 * 180.08594 * 22 20 14 25 25 H 1.08999 * 109.46850 * 64.94397 * 1 2 3 26 26 H 1.09000 * 109.46984 * 184.94634 * 1 2 3 27 27 H 1.09002 * 109.46983 * 304.94079 * 1 2 3 28 28 H 1.08992 * 109.46874 * 239.99684 * 2 1 3 29 29 H 1.09004 * 109.46855 * 119.99656 * 2 1 3 30 30 H 0.97000 * 119.99921 * 355.16025 * 8 7 5 31 31 H 1.00901 * 110.99843 * 155.75739 * 13 3 2 32 32 H 1.08999 * 109.46918 * 60.00023 * 16 14 13 33 33 H 1.08999 * 109.47037 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.47524 * 59.99141 * 17 16 14 35 35 H 1.08995 * 109.47447 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47414 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47246 * 300.00222 * 18 17 16 38 38 H 1.08999 * 109.46882 * 59.99858 * 19 18 17 39 39 H 1.08999 * 109.47288 * 179.97438 * 19 18 17 40 40 H 1.09009 * 115.54889 * 34.41918 * 22 20 14 41 41 H 1.08991 * 117.50056 * 0.02562 * 23 22 20 42 42 H 1.09006 * 117.49394 * 145.02219 * 23 22 20 43 43 H 1.09005 * 117.50443 * 214.97842 * 24 22 20 44 44 H 1.09001 * 117.49940 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1266 1.4437 0.0870 5 6 1.4418 2.1869 1.1658 6 1 0.7577 3.0040 0.9911 7 6 1.7681 1.8247 2.4556 8 7 2.6822 0.9035 2.6687 9 14 0.9114 2.6422 3.9003 10 1 1.4371 2.0799 5.1702 11 1 -0.5499 2.3913 3.8158 12 1 1.1655 4.1048 3.8633 13 7 1.6485 2.1002 -1.2538 14 6 2.5584 1.7334 -2.3472 15 1 2.8106 0.6758 -2.2706 16 6 3.8356 2.5704 -2.2504 17 6 3.4817 4.0550 -2.3577 18 6 2.7985 4.3206 -3.7007 19 6 1.5213 3.4837 -3.7975 20 6 1.8752 1.9990 -3.6901 21 1 2.5501 1.7264 -4.5014 22 6 0.5981 1.1620 -3.7869 23 6 0.5795 0.0163 -4.8008 24 6 -0.2328 1.2864 -5.0655 25 1 -0.3633 0.4352 -0.9310 26 1 -0.3633 -1.0238 0.0886 27 1 -0.3633 0.5886 0.8424 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.0765 0.4291 1.9201 31 1 1.6066 3.1018 -1.1389 32 1 4.3224 2.3812 -1.2937 33 1 4.5109 2.2979 -3.0614 34 1 2.8065 4.3272 -1.5465 35 1 4.3914 4.6514 -2.2883 36 1 2.5467 5.3784 -3.7774 37 1 3.4736 4.0484 -4.5120 38 1 0.8462 3.7559 -2.9863 39 1 1.0343 3.6732 -4.7541 40 1 0.0610 1.0139 -2.8500 41 1 1.4772 -0.1415 -5.3985 42 1 0.0298 -0.8855 -4.5310 43 1 -1.3166 1.2196 -4.9700 44 1 0.1301 1.9648 -5.8376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310008052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:39 Heat of formation + Delta-G solvation = -7.445675 kcal Electronic energy + Delta-G solvation = -20166.455408 eV Core-core repulsion = 17503.944147 eV Total energy + Delta-G solvation = -2662.511262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.45094 -36.50326 -35.36143 -32.24187 -30.65119 -30.14069 -28.40536 -25.09892 -23.54727 -23.10741 -22.48508 -21.55275 -20.01828 -19.55441 -18.05428 -17.06469 -15.71422 -15.03687 -14.45274 -14.31481 -14.05811 -13.71362 -13.36258 -13.10435 -12.90027 -12.50151 -12.31850 -12.10752 -11.66380 -11.37556 -11.26757 -11.22118 -10.92224 -10.81679 -10.76046 -10.27096 -10.20285 -10.18057 -10.07962 -9.91857 -9.83295 -9.71571 -9.52635 -9.27500 -8.46251 -8.26417 -7.21115 -6.30065 -4.01533 3.44242 3.46553 3.64457 4.09923 4.53690 4.82645 5.02848 5.07617 5.25916 5.28106 5.29317 5.37527 5.42410 5.65868 5.71435 5.79473 5.82541 5.86822 5.91446 5.95489 6.02547 6.06825 6.20859 6.30326 6.31929 6.38084 6.42149 6.47287 6.49893 6.60364 6.60973 6.68820 6.78114 6.92183 7.06175 7.16501 7.32933 7.52791 7.62033 7.97198 8.20858 8.60509 8.67899 8.93712 9.69322 11.06497 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.007243 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.388236 B = 3865.012990 C = 4473.149946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.009 1.009 5 C -0.588 4.588 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.914 5.914 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.668 5.668 14 C 0.093 3.907 15 H 0.069 0.931 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.040 4.040 21 H 0.057 0.943 22 C -0.123 4.123 23 C -0.190 4.190 24 C -0.189 4.189 25 H 0.045 0.955 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.271 0.729 31 H 0.334 0.666 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 2.724 -13.183 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.145 4.145 3 C 0.096 3.904 4 H 0.009 0.991 5 C -0.626 4.626 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.300 5.300 14 C -0.018 4.018 15 H 0.087 0.913 16 C -0.188 4.188 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.059 4.059 21 H 0.075 0.925 22 C -0.141 4.141 23 C -0.227 4.227 24 C -0.226 4.226 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.923 2.318 -11.666 12.048 hybrid contribution 0.894 0.319 -1.483 1.761 sum -1.029 2.637 -13.148 13.450 Atomic orbital electron populations 1.21465 0.96603 0.97661 1.01891 1.21518 0.96262 0.98556 0.98124 1.19209 0.93120 0.91427 0.86631 0.99107 1.21917 1.30339 1.18549 0.91825 0.93025 1.25646 0.95603 0.96993 1.00000 1.70792 1.24296 1.24208 1.35777 0.83612 0.75728 0.75446 0.75936 1.20974 1.21454 1.21667 1.60693 1.49832 1.13521 1.05929 1.21446 0.90054 0.98376 0.91925 0.91260 1.22181 0.99295 0.95789 1.01533 1.21496 1.00141 0.96428 0.97616 1.21529 0.97271 0.99188 0.97410 1.21499 0.97173 0.94451 1.01572 1.20675 0.94330 0.94139 0.96764 0.92493 1.22426 0.98471 0.98874 0.94313 1.22963 1.02213 0.92949 1.04533 1.22885 0.97952 1.00701 1.01055 0.93593 0.96669 0.91901 0.96131 0.92728 0.91720 0.84616 0.91834 0.92864 0.91335 0.92743 0.92577 0.92793 0.90914 0.92849 0.85864 0.89631 0.89466 0.89494 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.53 37.16 0.35 -2.24 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.20 4.85 1.78 -68.86 -0.12 4.73 16 4 H -0.01 -0.22 6.29 -51.93 -0.33 -0.55 16 5 C -0.59 -15.59 6.92 -34.44 -0.24 -15.83 16 6 H 0.05 1.39 7.75 -52.49 -0.41 0.98 16 7 C 0.02 0.61 5.29 -17.82 -0.09 0.51 16 8 N -0.91 -26.85 13.20 55.43 0.73 -26.12 16 9 Si 1.06 24.88 29.91 -169.99 -5.08 19.79 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -13.14 4.37 -100.95 -0.44 -13.58 16 14 C 0.09 1.59 2.16 -67.71 -0.15 1.44 16 15 H 0.07 1.29 6.76 -51.93 -0.35 0.94 16 16 C -0.15 -2.41 5.47 -26.73 -0.15 -2.56 16 17 C -0.12 -1.76 5.67 -26.73 -0.15 -1.91 16 18 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 19 C -0.11 -1.48 4.80 -26.73 -0.13 -1.61 16 20 C -0.04 -0.58 2.16 -90.62 -0.20 -0.78 16 21 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 22 C -0.12 -1.80 5.02 -90.62 -0.45 -2.25 16 23 C -0.19 -2.46 10.18 -26.69 -0.27 -2.73 16 24 C -0.19 -2.36 9.74 -26.70 -0.26 -2.62 16 25 H 0.05 0.94 6.56 -51.93 -0.34 0.60 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 1.50 6.89 -51.93 -0.36 1.15 16 28 H 0.02 0.44 6.97 -51.93 -0.36 0.08 16 29 H 0.05 1.39 6.18 -51.93 -0.32 1.07 16 30 H 0.27 7.94 5.62 -40.82 -0.23 7.71 16 31 H 0.33 6.70 5.06 -39.29 -0.20 6.50 16 32 H 0.06 1.18 7.04 -51.93 -0.37 0.82 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.13 6.32 -51.93 -0.33 0.80 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.09 7.08 -51.93 -0.37 0.73 16 39 H 0.05 0.66 7.29 -51.93 -0.38 0.28 16 40 H 0.12 2.12 6.18 -51.92 -0.32 1.80 16 41 H 0.09 1.04 8.05 -51.93 -0.42 0.63 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.00 7.61 -51.93 -0.40 0.60 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -27.11 321.44 -9.74 -36.86 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.63 Total: 8.27 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.16 Total: -30.07 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.29 Total: -39.70 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.11 -9.74 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.410 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds